data_RAO # _chem_comp.id RAO _chem_comp.name "methyl 6-deoxy-alpha-L-rhamnopyranoside" _chem_comp.type L-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H14 O5" _chem_comp.mon_nstd_parent_comp_id RAM _chem_comp.pdbx_synonyms ;1-O-METHYL-ALPHA-RHAMNOSE; methyl 6-deoxy-alpha-L-mannopyranoside; methyl 6-deoxy-alpha-L-rhamnoside; methyl 6-deoxy-L-rhamnoside; methyl 6-deoxy-rhamnoside ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-12-11 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 178.183 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RAO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1M7I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 RAO 1-O-METHYL-ALPHA-RHAMNOSE PDB ? 2 RAO "methyl 6-deoxy-alpha-L-mannopyranoside" PDB ? 3 RAO "methyl 6-deoxy-alpha-L-rhamnoside" PDB ? 4 RAO "methyl 6-deoxy-L-rhamnoside" PDB ? 5 RAO "methyl 6-deoxy-rhamnoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RAO C1 C1 C 0 1 N N R -6.261 13.755 34.446 -0.996 -0.265 1.096 C1 RAO 1 RAO O1 O1 O 0 1 N N N -5.752 12.674 33.641 -0.779 1.037 1.642 O1 RAO 2 RAO C7 C7 C 0 1 N N N -5.121 11.637 34.391 -0.298 0.852 2.974 C7 RAO 3 RAO O2 O2 O 0 1 N N N -7.511 15.900 34.266 -1.708 -1.437 -0.896 O2 RAO 4 RAO C2 C2 C 0 1 N N R -7.190 14.656 33.605 -1.518 -0.136 -0.336 C2 RAO 5 RAO C3 C3 C 0 1 N N R -8.480 13.911 33.255 -0.496 0.637 -1.173 C3 RAO 6 RAO O3 O3 O 0 1 N N N -9.391 14.810 32.636 -0.896 0.637 -2.545 O3 RAO 7 RAO C4 C4 C 0 1 N N R -9.135 13.300 34.509 0.868 -0.047 -1.036 C4 RAO 8 RAO O4 O4 O 0 1 N N N -10.239 12.486 34.133 1.867 0.739 -1.688 O4 RAO 9 RAO C5 C5 C 0 1 N N S -8.116 12.475 35.326 1.211 -0.182 0.448 C5 RAO 10 RAO O5 O5 O 0 1 N N N -6.952 13.282 35.620 0.231 -0.990 1.099 O5 RAO 11 RAO C6 C6 C 0 1 N N N -8.708 11.921 36.620 2.587 -0.835 0.594 C6 RAO 12 RAO H1 HC1 H 0 1 N N N -5.385 14.350 34.794 -1.730 -0.794 1.703 H1 RAO 13 RAO HC71 HC71 H 0 0 N N N -4.727 10.800 33.768 -0.118 1.824 3.434 HC71 RAO 14 RAO HC72 HC72 H 0 0 N N N -4.314 12.056 35.036 -1.041 0.308 3.557 HC72 RAO 15 RAO HC73 HC73 H 0 0 N N N -5.809 11.248 35.177 0.631 0.284 2.950 HC73 RAO 16 RAO HO2 HO2 H 0 1 N Y N -8.082 16.454 33.748 -2.357 -1.889 -0.339 HO2 RAO 17 RAO H2 HC2 H 0 1 N N N -6.632 14.908 32.673 -2.466 0.400 -0.330 H2 RAO 18 RAO H3 HC3 H 0 1 N N N -8.223 13.080 32.557 -0.428 1.663 -0.812 H3 RAO 19 RAO HO3 HO3 H 0 1 N Y N -10.191 14.347 32.418 -1.757 1.076 -2.585 HO3 RAO 20 RAO H4 HC4 H 0 1 N N N -9.497 14.134 35.154 0.827 -1.036 -1.493 H4 RAO 21 RAO HO4 HO4 H 0 1 N Y N -10.642 12.109 34.906 2.708 0.276 -1.571 HO4 RAO 22 RAO H5 HC5 H 0 1 N N N -7.824 11.599 34.699 1.228 0.805 0.908 H5 RAO 23 RAO H61 HC61 H 0 1 N N N -7.972 11.325 37.209 2.835 -0.927 1.651 H61 RAO 24 RAO H62 HC62 H 0 1 N N N -9.150 12.736 37.238 2.570 -1.824 0.137 H62 RAO 25 RAO H63 HC63 H 0 1 N N N -9.630 11.328 36.416 3.336 -0.218 0.097 H63 RAO 26 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RAO C1 O1 SING N N 1 RAO C1 C2 SING N N 2 RAO C1 O5 SING N N 3 RAO C1 H1 SING N N 4 RAO O1 C7 SING N N 5 RAO C7 HC71 SING N N 6 RAO C7 HC72 SING N N 7 RAO C7 HC73 SING N N 8 RAO O2 C2 SING N N 9 RAO O2 HO2 SING N N 10 RAO C2 C3 SING N N 11 RAO C2 H2 SING N N 12 RAO C3 O3 SING N N 13 RAO C3 C4 SING N N 14 RAO C3 H3 SING N N 15 RAO O3 HO3 SING N N 16 RAO C4 O4 SING N N 17 RAO C4 C5 SING N N 18 RAO C4 H4 SING N N 19 RAO O4 HO4 SING N N 20 RAO C5 O5 SING N N 21 RAO C5 C6 SING N N 22 RAO C5 H5 SING N N 23 RAO C6 H61 SING N N 24 RAO C6 H62 SING N N 25 RAO C6 H63 SING N N 26 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RAO SMILES ACDLabs 10.04 "OC1C(O)C(O)C(OC1OC)C" RAO SMILES_CANONICAL CACTVS 3.341 "CO[C@@H]1O[C@@H](C)[C@H](O)[C@@H](O)[C@H]1O" RAO SMILES CACTVS 3.341 "CO[CH]1O[CH](C)[CH](O)[CH](O)[CH]1O" RAO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)OC)O)O)O" RAO SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(C(C(C(O1)OC)O)O)O" RAO InChI InChI 1.03 "InChI=1S/C7H14O5/c1-3-4(8)5(9)6(10)7(11-2)12-3/h3-10H,1-2H3/t3-,4-,5+,6+,7+/m0/s1" RAO InChIKey InChI 1.03 OHWCAVRRXKJCRB-PAMBMQIZSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RAO "SYSTEMATIC NAME" ACDLabs 10.04 "methyl 6-deoxy-alpha-L-mannopyranoside" RAO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4R,5R,6S)-2-methoxy-6-methyl-oxane-3,4,5-triol" RAO "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 LRhap[1Me]a RAO "COMMON NAME" GMML 1.0 1-methyl-a-L-rhamnoopyranose RAO "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 1-O-methyl-a-rhamnose # _pdbx_chem_comp_related.comp_id RAO _pdbx_chem_comp_related.related_comp_id RAM _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 RAO C1 RAM C1 "Carbohydrate core" 2 RAO C2 RAM C2 "Carbohydrate core" 3 RAO C3 RAM C3 "Carbohydrate core" 4 RAO C4 RAM C4 "Carbohydrate core" 5 RAO C5 RAM C5 "Carbohydrate core" 6 RAO C6 RAM C6 "Carbohydrate core" 7 RAO O1 RAM O1 "Carbohydrate core" 8 RAO O2 RAM O2 "Carbohydrate core" 9 RAO O3 RAM O3 "Carbohydrate core" 10 RAO O4 RAM O4 "Carbohydrate core" 11 RAO O5 RAM O5 "Carbohydrate core" 12 RAO H1 RAM H1 "Carbohydrate core" 13 RAO H2 RAM H2 "Carbohydrate core" 14 RAO H3 RAM H3 "Carbohydrate core" 15 RAO H4 RAM H4 "Carbohydrate core" 16 RAO H5 RAM H5 "Carbohydrate core" 17 RAO H61 RAM H61 "Carbohydrate core" 18 RAO H62 RAM H62 "Carbohydrate core" 19 RAO H63 RAM H63 "Carbohydrate core" 20 RAO HO2 RAM HO2 "Carbohydrate core" 21 RAO HO3 RAM HO3 "Carbohydrate core" 22 RAO HO4 RAM HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support RAO "CARBOHYDRATE ISOMER" L PDB ? RAO "CARBOHYDRATE RING" pyranose PDB ? RAO "CARBOHYDRATE ANOMER" alpha PDB ? RAO "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RAO "Create component" 2002-12-11 RCSB RAO "Modify descriptor" 2011-06-04 RCSB RAO "Other modification" 2020-07-03 RCSB RAO "Modify parent residue" 2020-07-17 RCSB RAO "Modify name" 2020-07-17 RCSB RAO "Modify synonyms" 2020-07-17 RCSB RAO "Modify linking type" 2020-07-17 RCSB RAO "Modify atom id" 2020-07-17 RCSB RAO "Modify component atom id" 2020-07-17 RCSB RAO "Modify leaving atom flag" 2020-07-17 RCSB ##