data_RB5 # _chem_comp.id RB5 _chem_comp.name D-ribose _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-06-21 _chem_comp.pdbx_modified_date 2020-06-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 150.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RB5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3NI4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RB5 C5 C1 C 0 1 N N N 17.374 -13.470 -14.120 -2.388 0.491 -0.443 C1 RB5 1 RB5 O5 O1 O 0 1 N N N 18.424 -12.530 -13.876 -3.599 -0.065 0.073 O1 RB5 2 RB5 C4 C2 C 0 1 N N R 17.878 -14.855 -13.712 -1.191 -0.142 0.271 C2 RB5 3 RB5 O4 O2 O 0 1 N N N 19.049 -14.649 -12.864 -1.132 -1.535 -0.043 O2 RB5 4 RB5 C3 C3 C 0 1 N N R 16.767 -15.796 -13.069 0.098 0.540 -0.192 C3 RB5 5 RB5 O3 O3 O 0 1 N N N 15.488 -15.546 -13.699 0.038 1.933 0.122 O3 RB5 6 RB5 C2 C4 C 0 1 N N R 17.047 -17.365 -13.104 1.294 -0.092 0.521 C4 RB5 7 RB5 O2 O4 O 0 1 N N N 18.029 -17.618 -14.110 1.354 -1.485 0.208 O4 RB5 8 RB5 C1 C5 C 0 1 N N N 17.364 -18.137 -11.714 2.564 0.580 0.066 C5 RB5 9 RB5 O1 O5 O 0 1 N N N 18.148 -19.436 -11.788 3.430 -0.067 -0.472 O5 RB5 10 RB5 H51 H1 H 0 1 N N N 16.486 -13.204 -13.528 -2.322 0.288 -1.512 H1 RB5 11 RB5 H52 H1A H 0 1 N N N 17.107 -13.466 -15.187 -2.382 1.568 -0.276 H1A RB5 12 RB5 HO5 HO1 H 0 1 N N N 18.134 -11.660 -14.122 -4.400 0.291 -0.334 HO1 RB5 13 RB5 H4 H2 H 0 1 N N N 18.160 -15.425 -14.610 -1.302 -0.017 1.348 H2 RB5 14 RB5 HO4 HO2 H 0 1 N N N 19.393 -15.491 -12.589 -1.033 -1.722 -0.987 HO2 RB5 15 RB5 H3 H3 H 0 1 N N N 16.779 -15.523 -12.003 0.209 0.415 -1.269 H3 RB5 16 RB5 HO3 HO3 H 0 1 N N N 14.828 -16.110 -13.312 -0.061 2.120 1.065 HO3 RB5 17 RB5 H2 H4 H 0 1 N N N 16.075 -17.820 -13.345 1.183 0.033 1.599 H4 RB5 18 RB5 HO2 HO4 H 0 1 N N N 18.569 -18.354 -13.848 1.453 -1.672 -0.736 HO4 RB5 19 RB5 H1 H5 H 0 1 N N N 17.029 -17.741 -10.767 2.699 1.640 0.220 H5 RB5 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RB5 C5 O5 SING N N 1 RB5 C5 C4 SING N N 2 RB5 C4 O4 SING N N 3 RB5 C4 C3 SING N N 4 RB5 C3 O3 SING N N 5 RB5 C3 C2 SING N N 6 RB5 C2 O2 SING N N 7 RB5 C2 C1 SING N N 8 RB5 C1 O1 DOUB N N 9 RB5 C5 H51 SING N N 10 RB5 C5 H52 SING N N 11 RB5 O5 HO5 SING N N 12 RB5 C4 H4 SING N N 13 RB5 O4 HO4 SING N N 14 RB5 C3 H3 SING N N 15 RB5 O3 HO3 SING N N 16 RB5 C2 H2 SING N N 17 RB5 O2 HO2 SING N N 18 RB5 C1 H1 SING N N 19 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RB5 SMILES ACDLabs 12.01 "O=CC(O)C(O)C(O)CO" RB5 SMILES_CANONICAL CACTVS 3.370 "OC[C@@H](O)[C@@H](O)[C@@H](O)C=O" RB5 SMILES CACTVS 3.370 "OC[CH](O)[CH](O)[CH](O)C=O" RB5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C([C@H]([C@H]([C@H](C=O)O)O)O)O" RB5 SMILES "OpenEye OEToolkits" 1.7.0 "C(C(C(C(C=O)O)O)O)O" RB5 InChI InChI 1.03 "InChI=1S/C5H10O5/c6-1-3(8)5(10)4(9)2-7/h1,3-5,7-10H,2H2/t3-,4+,5-/m0/s1" RB5 InChIKey InChI 1.03 PYMYPHUHKUWMLA-LMVFSUKVSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RB5 "SYSTEMATIC NAME" ACDLabs 12.01 D-ribose RB5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2R,3R,4R)-2,3,4,5-tetrahydroxypentanal" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RB5 "Create component" 2010-06-21 PDBJ RB5 "Modify descriptor" 2011-06-04 RCSB RB5 "Modify atom id" 2020-06-24 RCSB ##