data_RBZ # _chem_comp.id RBZ _chem_comp.name "ALPHA-RIBAZOLE-5'-PHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H19 N2 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-03-19 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces RIC _chem_comp.formula_weight 358.284 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RBZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1L4E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RBZ N3 N3 N 0 1 Y N N 56.354 41.750 14.085 2.481 1.518 -1.756 N3 RBZ 1 RBZ N1 N1 N 0 1 Y N N 56.802 40.986 11.976 1.534 0.283 -0.226 N1 RBZ 2 RBZ C2 C2 C 0 1 Y N N 55.976 40.970 13.065 1.346 1.035 -1.345 C2 RBZ 3 RBZ C7A C7A C 0 1 Y N N 57.825 41.896 12.389 2.884 0.311 0.064 C7A RBZ 4 RBZ C3A C3A C 0 1 Y N N 57.527 42.364 13.693 3.478 1.109 -0.929 C3A RBZ 5 RBZ C4 C4 C 0 1 Y N N 58.377 43.299 14.355 4.857 1.327 -0.901 C4 RBZ 6 RBZ C5 C5 C 0 1 Y N N 59.546 43.773 13.703 5.616 0.765 0.087 C5 RBZ 7 RBZ C6 C6 C 0 1 Y N N 59.873 43.293 12.357 5.030 -0.027 1.065 C6 RBZ 8 RBZ C7 C7 C 0 1 Y N N 59.012 42.368 11.719 3.670 -0.252 1.060 C7 RBZ 9 RBZ C8 C8 C 0 1 N N N 60.446 44.783 14.425 7.103 1.003 0.112 C8 RBZ 10 RBZ C9 C9 C 0 1 N N N 61.115 43.771 11.627 5.886 -0.637 2.145 C9 RBZ 11 RBZ P P P 0 1 N N N 59.742 39.317 6.169 -5.087 0.823 0.330 P RBZ 12 RBZ O1P O1P O 0 1 N N N 59.515 38.062 5.365 -5.070 0.622 1.797 O1P RBZ 13 RBZ O2P O2P O 0 1 N N N 59.889 40.482 5.249 -5.666 2.288 -0.004 O2P RBZ 14 RBZ O3P O3P O 0 1 N N N 60.974 39.186 6.976 -6.023 -0.293 -0.354 O3P RBZ 15 RBZ "O5'" O5* O 0 1 N N N 58.487 39.572 7.112 -3.589 0.695 -0.246 "O5'" RBZ 16 RBZ "C5'" C5* C 0 1 N N N 58.103 38.577 8.086 -3.089 -0.574 0.182 "C5'" RBZ 17 RBZ "C4'" C4* C 0 1 N N R 58.411 38.995 9.527 -1.661 -0.761 -0.334 "C4'" RBZ 18 RBZ "O4'" O4* O 0 1 N N N 57.884 40.325 9.884 -0.777 0.183 0.291 "O4'" RBZ 19 RBZ "C3'" C3* C 0 1 N N S 57.834 38.124 10.612 -1.118 -2.154 0.071 "C3'" RBZ 20 RBZ "O3'" O3* O 0 1 N N N 58.618 38.161 11.823 -1.482 -3.148 -0.890 "O3'" RBZ 21 RBZ "C2'" C2* C 0 1 N N R 56.442 38.736 10.750 0.414 -1.891 0.054 "C2'" RBZ 22 RBZ "O2'" O2* O 0 1 N N N 55.872 38.296 11.988 0.940 -2.032 -1.267 "O2'" RBZ 23 RBZ "C1'" C1* C 0 1 N N S 56.686 40.248 10.663 0.498 -0.425 0.529 "C1'" RBZ 24 RBZ H2 H2 H 0 1 N N N 55.057 40.362 13.118 0.392 1.206 -1.821 H2 RBZ 25 RBZ H4 H4 H 0 1 N N N 58.131 43.655 15.370 5.324 1.939 -1.659 H4 RBZ 26 RBZ H7 H7 H 0 1 N N N 59.265 42.017 10.705 3.219 -0.866 1.825 H7 RBZ 27 RBZ H81 1H8 H 0 1 N N N 60.735 44.361 15.416 7.319 1.894 0.702 H81 RBZ 28 RBZ H82 2H8 H 0 1 N N N 61.364 45.155 13.913 7.602 0.143 0.559 H82 RBZ 29 RBZ H83 3H8 H 0 1 N N N 59.827 45.658 14.732 7.466 1.145 -0.906 H83 RBZ 30 RBZ H91 1H9 H 0 1 N N N 61.995 43.578 12.284 6.232 -1.619 1.822 H91 RBZ 31 RBZ H92 2H9 H 0 1 N N N 61.364 43.406 10.603 6.745 0.007 2.335 H92 RBZ 32 RBZ H93 3H9 H 0 1 N N N 61.089 44.885 11.598 5.300 -0.740 3.058 H93 RBZ 33 RBZ HOP2 2HOP H 0 0 N N N 60.032 41.273 5.756 -6.562 2.323 0.358 HOP2 RBZ 34 RBZ HOP3 3HOP H 0 0 N N N 61.117 39.977 7.483 -6.006 -0.126 -1.307 HOP3 RBZ 35 RBZ "H5'1" 1H5* H 0 0 N N N 58.567 37.591 7.851 -3.725 -1.367 -0.212 "H5'1" RBZ 36 RBZ "H5'2" 2H5* H 0 0 N N N 57.028 38.305 7.973 -3.090 -0.616 1.272 "H5'2" RBZ 37 RBZ "H4'" H4* H 0 1 N N N 59.524 38.935 9.501 -1.634 -0.644 -1.418 "H4'" RBZ 38 RBZ "H3'" H3* H 0 1 N N N 57.818 37.033 10.385 -1.457 -2.433 1.068 "H3'" RBZ 39 RBZ "HO'3" 3HO* H 0 0 N N N 58.254 37.612 12.507 -1.114 -3.986 -0.578 "HO'3" RBZ 40 RBZ "H2'" H2* H 0 1 N N N 55.708 38.433 9.967 0.929 -2.556 0.748 "H2'" RBZ 41 RBZ "HO'2" 2HO* H 0 0 N N N 55.006 38.677 12.074 0.775 -2.946 -1.537 "HO'2" RBZ 42 RBZ "H1'" H1* H 0 1 N N N 55.805 40.766 10.218 0.730 -0.393 1.594 "H1'" RBZ 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RBZ N3 C2 DOUB Y N 1 RBZ N3 C3A SING Y N 2 RBZ N1 C2 SING Y N 3 RBZ N1 C7A SING Y N 4 RBZ N1 "C1'" SING N N 5 RBZ C2 H2 SING N N 6 RBZ C7A C3A DOUB Y N 7 RBZ C7A C7 SING Y N 8 RBZ C3A C4 SING Y N 9 RBZ C4 C5 DOUB Y N 10 RBZ C4 H4 SING N N 11 RBZ C5 C6 SING Y N 12 RBZ C5 C8 SING N N 13 RBZ C6 C7 DOUB Y N 14 RBZ C6 C9 SING N N 15 RBZ C7 H7 SING N N 16 RBZ C8 H81 SING N N 17 RBZ C8 H82 SING N N 18 RBZ C8 H83 SING N N 19 RBZ C9 H91 SING N N 20 RBZ C9 H92 SING N N 21 RBZ C9 H93 SING N N 22 RBZ P O1P DOUB N N 23 RBZ P O2P SING N N 24 RBZ P O3P SING N N 25 RBZ P "O5'" SING N N 26 RBZ O2P HOP2 SING N N 27 RBZ O3P HOP3 SING N N 28 RBZ "O5'" "C5'" SING N N 29 RBZ "C5'" "C4'" SING N N 30 RBZ "C5'" "H5'1" SING N N 31 RBZ "C5'" "H5'2" SING N N 32 RBZ "C4'" "O4'" SING N N 33 RBZ "C4'" "C3'" SING N N 34 RBZ "C4'" "H4'" SING N N 35 RBZ "O4'" "C1'" SING N N 36 RBZ "C3'" "O3'" SING N N 37 RBZ "C3'" "C2'" SING N N 38 RBZ "C3'" "H3'" SING N N 39 RBZ "O3'" "HO'3" SING N N 40 RBZ "C2'" "O2'" SING N N 41 RBZ "C2'" "C1'" SING N N 42 RBZ "C2'" "H2'" SING N N 43 RBZ "O2'" "HO'2" SING N N 44 RBZ "C1'" "H1'" SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RBZ SMILES ACDLabs 10.04 "O=P(O)(O)OCC3OC(n2cnc1cc(c(cc12)C)C)C(O)C3O" RBZ SMILES_CANONICAL CACTVS 3.341 "Cc1cc2ncn([C@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O)c2cc1C" RBZ SMILES CACTVS 3.341 "Cc1cc2ncn([CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O)c2cc1C" RBZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cc2c(cc1C)n(cn2)[C@@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O" RBZ SMILES "OpenEye OEToolkits" 1.5.0 "Cc1cc2c(cc1C)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O" RBZ InChI InChI 1.03 "InChI=1S/C14H19N2O7P/c1-7-3-9-10(4-8(7)2)16(6-15-9)14-13(18)12(17)11(23-14)5-22-24(19,20)21/h3-4,6,11-14,17-18H,5H2,1-2H3,(H2,19,20,21)/t11-,12-,13-,14+/m1/s1" RBZ InChIKey InChI 1.03 ZMRGXEJKZPRBPJ-SYQHCUMBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RBZ "SYSTEMATIC NAME" ACDLabs 10.04 "5,6-dimethyl-1-(5-O-phosphono-alpha-D-ribofuranosyl)-1H-benzimidazole" RBZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5S)-5-(5,6-dimethylbenzimidazol-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RBZ "Create component" 2002-03-19 RCSB RBZ "Modify descriptor" 2011-06-04 RCSB #