data_RD6 # _chem_comp.id RD6 _chem_comp.name "(8S)-6-(7-bromo-9H-pyrimido[4,5-b]indol-4-yl)-8-fluoro-6-azaspiro[3.4]octane-8-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H16 Br F N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-22 _chem_comp.pdbx_modified_date 2022-07-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 419.248 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RD6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5SRO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RD6 C02 C1 C 0 1 N N N -43.914 -31.940 3.464 3.904 -1.818 -1.305 C02 RD6 1 RD6 C03 C2 C 0 1 N N S -45.030 -31.209 2.485 3.835 -0.475 -0.626 C03 RD6 2 RD6 C04 C3 C 0 1 N N N -45.852 -30.193 3.303 2.592 0.305 -1.103 C04 RD6 3 RD6 C06 C4 C 0 1 Y N N -47.750 -28.943 2.175 1.065 1.718 0.012 C06 RD6 4 RD6 C07 C5 C 0 1 Y N N -48.574 -28.879 3.333 -0.333 1.775 -0.017 C07 RD6 5 RD6 C08 C6 C 0 1 Y N N -48.406 -28.829 4.782 -1.409 0.772 0.007 C08 RD6 6 RD6 C09 C7 C 0 1 Y N N -49.713 -28.773 5.346 -2.615 1.488 -0.048 C09 RD6 7 RD6 C10 C8 C 0 1 Y N N -49.939 -28.715 6.739 -3.820 0.795 -0.040 C10 RD6 8 RD6 C11 C9 C 0 1 Y N N -48.812 -28.713 7.572 -3.824 -0.583 0.021 C11 RD6 9 RD6 C12 C10 C 0 1 Y N N -47.490 -28.768 7.072 -2.631 -1.290 0.075 C12 RD6 10 RD6 C13 C11 C 0 1 Y N N -47.315 -28.824 5.684 -1.427 -0.620 0.068 C13 RD6 11 RD6 C16 C12 C 0 1 Y N N -49.963 -28.852 3.055 -0.957 3.031 -0.084 C16 RD6 12 RD6 C18 C13 C 0 1 Y N N -49.661 -28.946 0.783 1.123 4.021 -0.088 C18 RD6 13 RD6 C20 C14 C 0 1 N N N -45.449 -29.126 1.160 2.622 0.447 1.263 C20 RD6 14 RD6 C21 C15 C 0 1 N N N -44.370 -30.275 1.423 3.630 -0.650 0.885 C21 RD6 15 RD6 C22 C16 C 0 1 N N N -43.227 -29.287 1.892 3.292 -2.059 1.358 C22 RD6 16 RD6 C23 C17 C 0 1 N N N -42.181 -30.119 1.160 4.158 -1.755 2.595 C23 RD6 17 RD6 C24 C18 C 0 1 N N N -43.290 -31.057 0.595 4.896 -0.714 1.732 C24 RD6 18 RD6 F25 F1 F 0 1 N N N -45.839 -32.143 2.016 4.998 0.259 -0.880 F25 RD6 19 RD6 N05 N1 N 0 1 N N N -46.254 -28.989 2.388 1.723 0.503 0.079 N05 RD6 20 RD6 N15 N2 N 0 1 Y N N -50.712 -28.785 4.288 -2.316 2.839 -0.102 N15 RD6 21 RD6 N17 N3 N 0 1 Y N N -50.568 -28.883 1.806 -0.189 4.120 -0.118 N17 RD6 22 RD6 N19 N4 N 0 1 Y N N -48.298 -28.976 0.911 1.748 2.861 -0.030 N19 RD6 23 RD6 O01 O1 O 0 1 N N N -43.946 -33.229 3.416 2.953 -2.231 -1.925 O01 RD6 24 RD6 O26 O2 O 0 1 N N N -43.155 -31.276 4.140 5.024 -2.553 -1.225 O26 RD6 25 RD6 BR14 BR1 BR 0 0 N N N -49.079 -28.634 9.523 -5.468 -1.517 0.031 BR14 RD6 26 RD6 H041 H1 H 0 0 N N N -45.248 -29.827 4.146 2.893 1.271 -1.509 H041 RD6 27 RD6 H042 H2 H 0 0 N N N -46.760 -30.681 3.687 2.063 -0.269 -1.864 H042 RD6 28 RD6 H101 H3 H 0 0 N N N -50.939 -28.674 7.145 -4.754 1.335 -0.082 H101 RD6 29 RD6 H121 H4 H 0 0 N N N -46.642 -28.767 7.740 -2.646 -2.368 0.123 H121 RD6 30 RD6 H131 H5 H 0 0 N N N -46.311 -28.865 5.287 -0.500 -1.172 0.110 H131 RD6 31 RD6 H181 H6 H 0 0 N N N -50.058 -28.975 -0.221 1.712 4.926 -0.121 H181 RD6 32 RD6 H201 H7 H 0 0 N N N -44.941 -28.177 0.936 2.064 0.166 2.157 H201 RD6 33 RD6 H202 H8 H 0 0 N N N -46.096 -29.404 0.315 3.128 1.402 1.408 H202 RD6 34 RD6 H221 H9 H 0 0 N N N -43.087 -29.253 2.982 2.236 -2.202 1.588 H221 RD6 35 RD6 H222 H10 H 0 0 N N N -43.335 -28.263 1.504 3.697 -2.845 0.720 H222 RD6 36 RD6 H231 H11 H 0 0 N N N -41.467 -30.624 1.827 3.599 -1.318 3.422 H231 RD6 37 RD6 H232 H12 H 0 0 N N N -41.631 -29.563 0.387 4.786 -2.591 2.903 H232 RD6 38 RD6 H242 H13 H 0 0 N N N -43.423 -30.989 -0.495 5.758 -1.117 1.201 H242 RD6 39 RD6 H241 H14 H 0 0 N N N -43.178 -32.112 0.886 5.117 0.214 2.259 H241 RD6 40 RD6 H151 H15 H 0 0 N N N -51.706 -28.754 4.392 -2.975 3.550 -0.146 H151 RD6 41 RD6 H1 H16 H 0 1 N N N -42.583 -31.852 4.633 5.021 -3.408 -1.677 H1 RD6 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RD6 C24 C23 SING N N 1 RD6 C24 C21 SING N N 2 RD6 C18 N19 DOUB Y N 3 RD6 C18 N17 SING Y N 4 RD6 N19 C06 SING Y N 5 RD6 C20 C21 SING N N 6 RD6 C20 N05 SING N N 7 RD6 C23 C22 SING N N 8 RD6 C21 C22 SING N N 9 RD6 C21 C03 SING N N 10 RD6 N17 C16 DOUB Y N 11 RD6 F25 C03 SING N N 12 RD6 C06 N05 SING N N 13 RD6 C06 C07 DOUB Y N 14 RD6 N05 C04 SING N N 15 RD6 C03 C04 SING N N 16 RD6 C03 C02 SING N N 17 RD6 C16 C07 SING Y N 18 RD6 C16 N15 SING Y N 19 RD6 C07 C08 SING Y N 20 RD6 O01 C02 DOUB N N 21 RD6 C02 O26 SING N N 22 RD6 N15 C09 SING Y N 23 RD6 C08 C09 DOUB Y N 24 RD6 C08 C13 SING Y N 25 RD6 C09 C10 SING Y N 26 RD6 C13 C12 DOUB Y N 27 RD6 C10 C11 DOUB Y N 28 RD6 C12 C11 SING Y N 29 RD6 C11 BR14 SING N N 30 RD6 C04 H041 SING N N 31 RD6 C04 H042 SING N N 32 RD6 C10 H101 SING N N 33 RD6 C12 H121 SING N N 34 RD6 C13 H131 SING N N 35 RD6 C18 H181 SING N N 36 RD6 C20 H201 SING N N 37 RD6 C20 H202 SING N N 38 RD6 C22 H221 SING N N 39 RD6 C22 H222 SING N N 40 RD6 C23 H231 SING N N 41 RD6 C23 H232 SING N N 42 RD6 C24 H242 SING N N 43 RD6 C24 H241 SING N N 44 RD6 N15 H151 SING N N 45 RD6 O26 H1 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RD6 SMILES ACDLabs 12.01 "O=C(O)C1(F)CN(CC21CCC2)c1ncnc2[NH]c3cc(Br)ccc3c12" RD6 InChI InChI 1.06 "InChI=1S/C18H16BrFN4O2/c19-10-2-3-11-12(6-10)23-14-13(11)15(22-9-21-14)24-7-17(4-1-5-17)18(20,8-24)16(25)26/h2-3,6,9H,1,4-5,7-8H2,(H,25,26)(H,21,22,23)/t18-/m0/s1" RD6 InChIKey InChI 1.06 RIJVOOFUJLZCSA-SFHVURJKSA-N RD6 SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@@]1(F)CN(CC12CCC2)c3ncnc4[nH]c5cc(Br)ccc5c34" RD6 SMILES CACTVS 3.385 "OC(=O)[C]1(F)CN(CC12CCC2)c3ncnc4[nH]c5cc(Br)ccc5c34" RD6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Br)[nH]c3c2c(ncn3)N4C[C@@](C5(C4)CCC5)(C(=O)O)F" RD6 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Br)[nH]c3c2c(ncn3)N4CC5(CCC5)C(C4)(C(=O)O)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RD6 "SYSTEMATIC NAME" ACDLabs 12.01 "(8S)-6-(7-bromo-9H-pyrimido[4,5-b]indol-4-yl)-8-fluoro-6-azaspiro[3.4]octane-8-carboxylic acid" RD6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(8~{S})-6-(7-bromanyl-9~{H}-pyrimido[4,5-b]indol-4-yl)-8-fluoranyl-6-azaspiro[3.4]octane-8-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RD6 "Create component" 2022-06-22 RCSB RD6 "Initial release" 2022-07-06 RCSB #