data_RD9 # _chem_comp.id RD9 _chem_comp.name "methyl 4-oxidanylidene-4-[4-(trifluoromethyl)-2,3-dihydroindol-1-yl]butanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H14 F3 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-29 _chem_comp.pdbx_modified_date 2022-12-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 301.261 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RD9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BSP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RD9 C06 C1 C 0 1 N N N 23.422 -4.722 -6.233 2.786 -0.280 0.000 C06 RD9 1 RD9 C07 C2 C 0 1 N N N 24.831 -4.323 -5.805 1.547 0.578 -0.001 C07 RD9 2 RD9 C10 C3 C 0 1 N N N 25.818 -6.594 -6.536 0.082 -1.443 0.001 C10 RD9 3 RD9 C11 C4 C 0 1 N N N 27.210 -7.159 -6.574 -1.448 -1.591 0.001 C11 RD9 4 RD9 C12 C5 C 0 1 Y N N 28.124 -6.122 -5.912 -1.968 -0.171 0.000 C12 RD9 5 RD9 C13 C6 C 0 1 Y N N 27.348 -5.005 -5.592 -0.886 0.695 -0.001 C13 RD9 6 RD9 C14 C7 C 0 1 Y N N 27.929 -3.893 -4.954 -1.120 2.071 -0.002 C14 RD9 7 RD9 C15 C8 C 0 1 Y N N 29.288 -3.884 -4.658 -2.410 2.558 -0.002 C15 RD9 8 RD9 C16 C9 C 0 1 Y N N 30.070 -4.995 -4.985 -3.482 1.685 -0.001 C16 RD9 9 RD9 C17 C10 C 0 1 Y N N 29.505 -6.104 -5.607 -3.259 0.321 0.000 C17 RD9 10 RD9 C18 C11 C 0 1 N N N 30.462 -7.252 -5.908 -4.427 -0.632 0.001 C18 RD9 11 RD9 F19 F1 F 0 1 N N N 29.845 -8.356 -6.433 -4.371 -1.438 1.143 F19 RD9 12 RD9 F20 F2 F 0 1 N N N 31.049 -7.576 -4.725 -5.622 0.095 0.001 F20 RD9 13 RD9 F21 F3 F 0 1 N N N 31.436 -6.797 -6.751 -4.372 -1.438 -1.141 F21 RD9 14 RD9 N09 N1 N 0 1 N N N 25.931 -5.256 -5.984 0.328 0.002 -0.000 N09 RD9 15 RD9 O08 O1 O 0 1 N N N 25.028 -3.255 -5.341 1.646 1.786 -0.001 O08 RD9 16 RD9 H1 H1 H 0 1 N N N 23.428 -4.449 -7.299 2.792 -0.909 0.890 H1 RD9 17 RD9 H2 H2 H 0 1 N N N 23.462 -5.817 -6.135 2.792 -0.910 -0.890 H2 RD9 18 RD9 H4 H4 H 0 1 N N N 25.397 -6.552 -7.551 0.506 -1.898 0.896 H4 RD9 19 RD9 H5 H5 H 0 1 N N N 27.249 -8.108 -6.019 -1.780 -2.118 -0.894 H5 RD9 20 RD9 H6 H6 H 0 1 N N N 27.317 -3.043 -4.693 -0.286 2.758 -0.002 H6 RD9 21 RD9 H7 H7 H 0 1 N N N 29.735 -3.025 -4.179 -2.583 3.624 -0.003 H7 RD9 22 RD9 H8 H8 H 0 1 N N N 31.125 -4.993 -4.752 -4.492 2.069 -0.001 H8 RD9 23 RD9 C05 C12 C 0 1 N N N ? ? ? 4.026 0.615 -0.000 C05 RD9 24 RD9 C03 C13 C 0 1 N N N ? ? ? 5.265 -0.242 0.000 C03 RD9 25 RD9 O02 O2 O 0 1 N N N ? ? ? 6.479 0.331 0.000 O02 RD9 26 RD9 C01 C14 C 0 1 N N N ? ? ? 7.627 -0.557 0.001 C01 RD9 27 RD9 H3 H3 H 0 1 N N N ? ? ? 4.020 1.244 -0.891 H3 RD9 28 RD9 H9 H9 H 0 1 N N N ? ? ? 4.020 1.245 0.889 H9 RD9 29 RD9 O04 O3 O 0 1 N N N ? ? ? 5.166 -1.447 0.001 O04 RD9 30 RD9 H10 H10 H 0 1 N N N ? ? ? 8.543 0.034 0.000 H10 RD9 31 RD9 H11 H11 H 0 1 N N N ? ? ? 7.601 -1.185 0.891 H11 RD9 32 RD9 H12 H12 H 0 1 N N N ? ? ? 7.601 -1.186 -0.889 H12 RD9 33 RD9 H13 H13 H 0 1 N N N 25.173 -7.215 -5.897 0.507 -1.900 -0.893 H13 RD9 34 RD9 H14 H14 H 0 1 N N N 27.522 -7.330 -7.615 -1.779 -2.116 0.897 H14 RD9 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RD9 F21 C18 SING N N 1 RD9 C11 C10 SING N N 2 RD9 C11 C12 SING N N 3 RD9 C10 N09 SING N N 4 RD9 F19 C18 SING N N 5 RD9 C06 C07 SING N N 6 RD9 N09 C07 SING N N 7 RD9 N09 C13 SING N N 8 RD9 C12 C17 DOUB Y N 9 RD9 C12 C13 SING Y N 10 RD9 C18 C17 SING N N 11 RD9 C18 F20 SING N N 12 RD9 C07 O08 DOUB N N 13 RD9 C17 C16 SING Y N 14 RD9 C13 C14 DOUB Y N 15 RD9 C16 C15 DOUB Y N 16 RD9 C14 C15 SING Y N 17 RD9 C06 H1 SING N N 18 RD9 C06 H2 SING N N 19 RD9 C10 H4 SING N N 20 RD9 C11 H5 SING N N 21 RD9 C14 H6 SING N N 22 RD9 C15 H7 SING N N 23 RD9 C16 H8 SING N N 24 RD9 C06 C05 SING N N 25 RD9 C05 C03 SING N N 26 RD9 C03 O02 SING N N 27 RD9 O02 C01 SING N N 28 RD9 C05 H3 SING N N 29 RD9 C05 H9 SING N N 30 RD9 C03 O04 DOUB N N 31 RD9 C01 H10 SING N N 32 RD9 C01 H11 SING N N 33 RD9 C01 H12 SING N N 34 RD9 C10 H13 SING N N 35 RD9 C11 H14 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RD9 InChI InChI 1.06 "InChI=1S/C14H14F3NO3/c1-21-13(20)6-5-12(19)18-8-7-9-10(14(15,16)17)3-2-4-11(9)18/h2-4H,5-8H2,1H3" RD9 InChIKey InChI 1.06 ZCVAYWXZXDNCFC-UHFFFAOYSA-N RD9 SMILES_CANONICAL CACTVS 3.385 "COC(=O)CCC(=O)N1CCc2c1cccc2C(F)(F)F" RD9 SMILES CACTVS 3.385 "COC(=O)CCC(=O)N1CCc2c1cccc2C(F)(F)F" RD9 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "COC(=O)CCC(=O)N1CCc2c1cccc2C(F)(F)F" RD9 SMILES "OpenEye OEToolkits" 3.1.0.0 "COC(=O)CCC(=O)N1CCc2c1cccc2C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id RD9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "methyl 4-oxidanylidene-4-[4-(trifluoromethyl)-2,3-dihydroindol-1-yl]butanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RD9 "Create component" 2022-11-29 PDBE RD9 "Initial release" 2022-12-14 RCSB #