data_RDL # _chem_comp.id RDL _chem_comp.name 6,7-DIOXO-5H-8-RIBITYLAMINOLUMAZINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H14 N4 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-02-04 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 330.251 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RDL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1NQU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RDL O15 O15 O 0 1 N N N 137.561 10.686 142.202 0.755 -1.016 6.282 O15 RDL 1 RDL C15 C15 C 0 1 N N N 137.481 11.313 143.472 0.641 0.051 5.340 C15 RDL 2 RDL C14 C14 C 0 1 N N R 138.887 11.480 144.072 0.273 -0.515 3.968 C14 RDL 3 RDL O14 O14 O 0 1 N N N 139.486 10.189 144.279 -0.973 -1.207 4.057 O14 RDL 4 RDL C13 C13 C 0 1 N N S 139.801 12.277 143.156 0.150 0.628 2.959 C13 RDL 5 RDL O13 O13 O 0 1 N N N 139.236 13.586 142.971 1.397 1.321 2.870 O13 RDL 6 RDL C12 C12 C 0 1 N N S 141.243 12.371 143.657 -0.217 0.061 1.587 C12 RDL 7 RDL O12 O12 O 0 1 N N N 142.090 13.022 142.723 -1.464 -0.630 1.676 O12 RDL 8 RDL C11 C11 C 0 1 N N N 141.331 13.188 144.896 -0.339 1.205 0.578 C11 RDL 9 RDL N9 N9 N 0 1 Y N N 142.537 13.105 145.696 -0.692 0.662 -0.735 N9 RDL 10 RDL C8 C8 C 0 1 Y N N 142.539 12.279 146.733 -1.988 0.521 -1.077 C8 RDL 11 RDL O8 O8 O 0 1 N N N 141.570 11.520 146.953 -2.867 0.842 -0.301 O8 RDL 12 RDL C7 C7 C 0 1 Y N N 143.688 12.271 147.659 -2.331 -0.032 -2.417 C7 RDL 13 RDL O7 O7 O 0 1 N N N 143.662 11.496 148.656 -3.491 -0.170 -2.751 O7 RDL 14 RDL C10 C10 C 0 1 Y N N 143.563 13.928 145.442 0.298 0.306 -1.613 C10 RDL 15 RDL C5 C5 C 0 1 Y N N 144.690 13.915 146.352 -0.005 -0.212 -2.853 C5 RDL 16 RDL N6 N6 N 0 1 Y N N 144.722 13.076 147.417 -1.330 -0.378 -3.255 N6 RDL 17 RDL C4 C4 C 0 1 Y N N 145.772 14.826 146.077 1.050 -0.571 -3.724 C4 RDL 18 RDL O4 O4 O 0 1 N N N 146.780 14.844 146.834 0.810 -1.033 -4.826 O4 RDL 19 RDL N3 N3 N 0 1 Y N N 145.680 15.620 144.997 2.325 -0.410 -3.317 N3 RDL 20 RDL C2 C2 C 0 1 Y N N 144.614 15.564 144.154 2.600 0.098 -2.103 C2 RDL 21 RDL N1 N1 N 0 1 Y N N 143.600 14.750 144.376 1.620 0.454 -1.254 N1 RDL 22 RDL O2 O2 O 0 1 N N N 144.601 16.301 143.153 3.760 0.237 -1.765 O2 RDL 23 RDL H15O OH15 H 0 0 N N N 136.692 10.582 141.831 0.987 -0.617 7.131 H15O RDL 24 RDL H151 1H15 H 0 0 N N N 136.930 12.281 143.424 -0.135 0.742 5.668 H151 RDL 25 RDL H152 2H15 H 0 0 N N N 136.795 10.768 144.162 1.592 0.579 5.272 H152 RDL 26 RDL H141 1H14 H 0 0 N N N 138.769 12.027 145.036 1.050 -1.206 3.640 H141 RDL 27 RDL H14O OH14 H 0 0 N N N 140.354 10.292 144.649 -1.631 -0.562 4.349 H14O RDL 28 RDL H131 1H13 H 0 0 N N N 139.863 11.734 142.184 -0.626 1.319 3.287 H131 RDL 29 RDL H13O OH13 H 0 0 N N N 139.807 14.084 142.398 2.055 0.675 2.578 H13O RDL 30 RDL H121 1H12 H 0 0 N N N 141.562 11.316 143.826 0.559 -0.629 1.259 H121 RDL 31 RDL H12O OH12 H 0 0 N N N 142.985 13.080 143.034 -2.121 0.015 1.968 H12O RDL 32 RDL H111 1H11 H 0 0 N N N 141.139 14.256 144.639 -1.116 1.896 0.906 H111 RDL 33 RDL H112 2H11 H 0 0 N N N 140.451 12.961 145.542 0.611 1.733 0.510 H112 RDL 34 RDL HN6 HN6 H 0 1 N N N 145.529 13.050 148.040 -1.531 -0.740 -4.131 HN6 RDL 35 RDL HN3 HN3 H 0 1 N N N 146.435 16.279 144.813 3.053 -0.659 -3.909 HN3 RDL 36 RDL HN1 HN1 H 0 1 N N N 142.828 14.756 143.709 1.845 0.818 -0.384 HN1 RDL 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RDL O15 C15 SING N N 1 RDL O15 H15O SING N N 2 RDL C15 C14 SING N N 3 RDL C15 H151 SING N N 4 RDL C15 H152 SING N N 5 RDL C14 O14 SING N N 6 RDL C14 C13 SING N N 7 RDL C14 H141 SING N N 8 RDL O14 H14O SING N N 9 RDL C13 O13 SING N N 10 RDL C13 C12 SING N N 11 RDL C13 H131 SING N N 12 RDL O13 H13O SING N N 13 RDL C12 O12 SING N N 14 RDL C12 C11 SING N N 15 RDL C12 H121 SING N N 16 RDL O12 H12O SING N N 17 RDL C11 N9 SING N N 18 RDL C11 H111 SING N N 19 RDL C11 H112 SING N N 20 RDL N9 C8 SING Y N 21 RDL N9 C10 SING Y N 22 RDL C8 O8 DOUB N N 23 RDL C8 C7 SING Y N 24 RDL C7 O7 DOUB N N 25 RDL C7 N6 SING Y N 26 RDL C10 C5 DOUB Y N 27 RDL C10 N1 SING Y N 28 RDL C5 N6 SING Y N 29 RDL C5 C4 SING Y N 30 RDL N6 HN6 SING N N 31 RDL C4 O4 DOUB N N 32 RDL C4 N3 SING Y N 33 RDL N3 C2 SING Y N 34 RDL N3 HN3 SING N N 35 RDL C2 N1 SING Y N 36 RDL C2 O2 DOUB N N 37 RDL N1 HN1 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RDL SMILES ACDLabs 10.04 "O=C1NC2=C(C(=O)N1)NC(=O)C(=O)N2CC(O)C(O)C(O)CO" RDL SMILES_CANONICAL CACTVS 3.341 "OC[C@@H](O)[C@@H](O)[C@@H](O)CN1C(=O)C(=O)NC2=C1NC(=O)NC2=O" RDL SMILES CACTVS 3.341 "OC[CH](O)[CH](O)[CH](O)CN1C(=O)C(=O)NC2=C1NC(=O)NC2=O" RDL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]([C@@H]([C@@H](CO)O)O)O)N1C2=C(C(=O)NC(=O)N2)NC(=O)C1=O" RDL SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(C(CO)O)O)O)N1C2=C(C(=O)NC(=O)N2)NC(=O)C1=O" RDL InChI InChI 1.03 "InChI=1S/C11H14N4O8/c16-2-4(18)6(19)3(17)1-15-7-5(12-9(21)10(15)22)8(20)14-11(23)13-7/h3-4,6,16-19H,1-2H2,(H,12,21)(H2,13,14,20,23)/t3-,4+,6-/m0/s1" RDL InChIKey InChI 1.03 MIBROOURCUHKMD-RPDRRWSUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RDL "SYSTEMATIC NAME" ACDLabs 10.04 "1-deoxy-1-(2,4,6,7-tetraoxo-1,3,4,5,6,7-hexahydropteridin-8(2H)-yl)-D-ribitol" RDL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "8-[(2S,3S,4R)-2,3,4,5-tetrahydroxypentyl]-1,5-dihydropteridine-2,4,6,7-tetrone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RDL "Create component" 2003-02-04 RCSB RDL "Modify descriptor" 2011-06-04 RCSB #