data_RDZ
#
_chem_comp.id RDZ
_chem_comp.name "Geranyl phosphate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H19 O4 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "[(2E)-3,7-dimethylocta-2,6-dienyl] dihydrogen phosphate; [(2~{E})-3,7-dimethylocta-2,6-dienyl] dihydrogen phosphate"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-09-28
_chem_comp.pdbx_modified_date 2022-01-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 234.229
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RDZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7AG5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RDZ C1 C1 C 0 1 N N N -6.471 15.755 -0.365 -4.128 2.128 -0.306 C1 RDZ 1
RDZ C2 C2 C 0 1 N N N -6.568 17.212 -0.038 -4.981 0.913 -0.049 C2 RDZ 2
RDZ C3 C3 C 0 1 N N N -6.782 17.663 1.186 -4.478 -0.286 -0.207 C3 RDZ 3
RDZ C4 C4 C 0 1 N N N -7.870 17.299 2.157 -3.015 -0.453 -0.525 C4 RDZ 4
RDZ C5 C5 C 0 1 N N N -8.394 15.863 2.102 -2.373 -1.388 0.501 C5 RDZ 5
RDZ C6 C6 C 0 1 N N N -8.857 15.313 3.426 -0.909 -1.556 0.183 C6 RDZ 6
RDZ C7 C7 C 0 1 N N N -9.028 16.113 4.468 -0.019 -0.801 0.778 C7 RDZ 7
RDZ C8 C8 C 0 1 N N N -9.172 15.720 5.889 1.444 -0.968 0.459 C8 RDZ 8
RDZ O1 O1 O 0 1 N N N -7.962 16.096 6.578 2.042 0.317 0.277 O1 RDZ 9
RDZ P1 P1 P 0 1 N N N -7.983 16.490 8.164 3.599 0.517 -0.077 P1 RDZ 10
RDZ O2 O2 O 0 1 N N N -8.512 15.381 9.004 3.894 2.079 -0.339 O2 RDZ 11
RDZ O3 O3 O 0 1 N N N -6.548 16.793 8.396 4.500 0.000 1.153 O3 RDZ 12
RDZ O4 O4 O 0 1 N N N -8.898 17.715 8.310 3.933 -0.258 -1.293 O4 RDZ 13
RDZ C9 C9 C 0 1 N N N -9.124 13.835 3.463 -0.470 -2.591 -0.821 C9 RDZ 14
RDZ C10 C10 C 0 1 N N N -6.418 18.116 -1.216 -6.414 1.078 0.390 C10 RDZ 15
RDZ H2 H1 H 0 1 N N N -6.592 15.163 0.555 -3.714 2.075 -1.313 H2 RDZ 16
RDZ H3 H2 H 0 1 N N N -7.262 15.486 -1.080 -4.738 3.027 -0.212 H3 RDZ 17
RDZ H1 H3 H 0 1 N N N -5.487 15.544 -0.810 -3.316 2.162 0.419 H1 RDZ 18
RDZ H4 H5 H 0 1 N N N -6.074 18.398 1.539 -5.112 -1.155 -0.108 H4 RDZ 19
RDZ H5 H7 H 0 1 N N N -7.482 17.473 3.172 -2.906 -0.879 -1.523 H5 RDZ 20
RDZ H6 H8 H 0 1 N N N -8.721 17.971 1.970 -2.522 0.519 -0.490 H6 RDZ 21
RDZ H7 H9 H 0 1 N N N -9.243 15.834 1.403 -2.481 -0.962 1.499 H7 RDZ 22
RDZ H8 H10 H 0 1 N N N -7.587 15.217 1.726 -2.866 -2.360 0.465 H8 RDZ 23
RDZ H9 H12 H 0 1 N N N -9.067 17.172 4.258 -0.334 -0.059 1.497 H9 RDZ 24
RDZ H10 H14 H 0 1 N N N -10.033 16.240 6.335 1.939 -1.485 1.282 H10 RDZ 25
RDZ H11 H15 H 0 1 N N N -9.322 14.633 5.963 1.553 -1.552 -0.455 H11 RDZ 26
RDZ H22 H16 H 0 1 N N N -9.300 15.669 9.449 4.815 2.274 -0.558 H22 RDZ 27
RDZ H23 H17 H 0 1 N N N -6.447 17.716 8.599 4.334 0.465 1.985 H23 RDZ 28
RDZ H13 H18 H 0 1 N N N -9.454 13.547 4.472 -0.449 -2.146 -1.816 H13 RDZ 29
RDZ H14 H19 H 0 1 N N N -9.910 13.586 2.735 0.526 -2.948 -0.562 H14 RDZ 30
RDZ H12 H20 H 0 1 N N N -8.203 13.290 3.209 -1.170 -3.426 -0.811 H12 RDZ 31
RDZ H16 H21 H 0 1 N N N -6.502 19.163 -0.889 -6.651 2.139 0.466 H16 RDZ 32
RDZ H17 H22 H 0 1 N N N -5.433 17.954 -1.679 -7.074 0.609 -0.340 H17 RDZ 33
RDZ H15 H23 H 0 1 N N N -7.208 17.897 -1.949 -6.552 0.604 1.362 H15 RDZ 34
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RDZ C10 C2 SING N N 1
RDZ C1 C2 SING N N 2
RDZ C2 C3 DOUB N N 3
RDZ C3 C4 SING N N 4
RDZ C5 C4 SING N N 5
RDZ C5 C6 SING N N 6
RDZ C6 C9 SING N N 7
RDZ C6 C7 DOUB N E 8
RDZ C7 C8 SING N N 9
RDZ C8 O1 SING N N 10
RDZ O1 P1 SING N N 11
RDZ P1 O4 DOUB N N 12
RDZ P1 O3 SING N N 13
RDZ P1 O2 SING N N 14
RDZ C1 H2 SING N N 15
RDZ C1 H3 SING N N 16
RDZ C1 H1 SING N N 17
RDZ C3 H4 SING N N 18
RDZ C4 H5 SING N N 19
RDZ C4 H6 SING N N 20
RDZ C5 H7 SING N N 21
RDZ C5 H8 SING N N 22
RDZ C7 H9 SING N N 23
RDZ C8 H10 SING N N 24
RDZ C8 H11 SING N N 25
RDZ O2 H22 SING N N 26
RDZ O3 H23 SING N N 27
RDZ C9 H13 SING N N 28
RDZ C9 H14 SING N N 29
RDZ C9 H12 SING N N 30
RDZ C10 H16 SING N N 31
RDZ C10 H17 SING N N 32
RDZ C10 H15 SING N N 33
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RDZ InChI InChI 1.03 "InChI=1S/C10H19O4P/c1-9(2)5-4-6-10(3)7-8-14-15(11,12)13/h5,7H,4,6,8H2,1-3H3,(H2,11,12,13)/b10-7+"
RDZ InChIKey InChI 1.03 FFOWJDCTFSWUMJ-JXMROGBWSA-N
RDZ SMILES_CANONICAL CACTVS 3.385 "CC(C)=CCC\C(C)=C\CO[P](O)(O)=O"
RDZ SMILES CACTVS 3.385 "CC(C)=CCCC(C)=CCO[P](O)(O)=O"
RDZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=CCC/C(=C/COP(=O)(O)O)/C)C"
RDZ SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CCCC(=CCOP(=O)(O)O)C)C"
#
_pdbx_chem_comp_identifier.comp_id RDZ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "[(2~{E})-3,7-dimethylocta-2,6-dienyl] dihydrogen phosphate"
# #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 RDZ "[(2E)-3,7-dimethylocta-2,6-dienyl] dihydrogen phosphate" AUTHOR ?
2 RDZ "[(2~{E})-3,7-dimethylocta-2,6-dienyl] dihydrogen phosphate" PDB ?
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RDZ "Create component" 2020-09-28 PDBE
RDZ "Modify synonyms" 2021-03-13 RCSB
RDZ "Modify synonyms" 2021-08-10 PDBE
RDZ "Initial release" 2022-02-02 RCSB
##