data_RE1 # _chem_comp.id RE1 _chem_comp.name "GLYCYL-L-A-AMINOPIMELYL-E-(D-2-AMINOETHYL)PHOSPHONATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H21 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2002-10-15 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 338.274 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RE1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1MPL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RE1 N2 N2 N 1 1 N N N N N N 25.939 -19.003 39.593 0.640 4.626 2.624 N2 RE1 1 RE1 C4 C4 C 0 1 N N N N N N 25.304 -17.603 39.532 -0.324 4.589 1.498 C4 RE1 2 RE1 C5 C5 C 0 1 N N N N N N 24.620 -17.496 38.157 0.384 4.566 0.167 C5 RE1 3 RE1 N3 N3 N 0 1 N N N N N N 24.212 -16.248 37.854 -0.516 4.532 -0.885 N3 RE1 4 RE1 C6 C6 C 0 1 N N S N N N 23.488 -15.872 36.645 -0.083 4.507 -2.266 C6 RE1 5 RE1 C7 C7 C 0 1 N N N N N N 22.081 -15.345 36.937 0.198 3.063 -2.704 C7 RE1 6 RE1 C8 C8 C 0 1 N N N N N N 21.189 -16.306 37.745 -1.054 2.178 -2.776 C8 RE1 7 RE1 C9 C9 C 0 1 N N N N N N 19.762 -15.629 37.752 -0.692 0.742 -3.175 C9 RE1 8 RE1 C10 C10 C 0 1 N N N N N N 19.630 -14.300 38.486 -1.917 -0.163 -3.300 C10 RE1 9 RE1 C11 C11 C 0 1 N N N N N N 18.172 -13.910 38.688 -1.530 -1.568 -3.716 C11 RE1 10 RE1 N4 N4 N 0 1 N N N N N N 17.643 -13.156 37.731 -2.620 -2.413 -3.838 N4 RE1 11 RE1 C12 C12 C 0 1 N N S N N N 16.235 -12.698 37.801 -2.498 -3.800 -4.257 C12 RE1 12 RE1 P1 P1 P 0 1 N N N N N N 16.313 -10.915 38.153 -3.840 -4.686 -3.389 P1 RE1 13 RE1 O3 O3 O 0 1 N N N N N N 24.475 -18.438 37.430 1.607 4.577 0.053 O3 RE1 14 RE1 C13 C13 C 0 1 N N N N N N 24.278 -14.767 35.940 -1.009 5.294 -3.212 C13 RE1 15 RE1 O4 O4 O 0 1 N N N N N N 24.982 -13.942 36.582 -0.984 4.930 -4.422 O4 RE1 16 RE1 O5 O5 O -1 1 N N N N N N 24.068 -14.758 34.719 -1.710 6.196 -2.670 O5 RE1 17 RE1 O6 O6 O 0 1 N N N N N N 17.567 -14.306 39.641 -0.361 -1.876 -3.939 O6 RE1 18 RE1 C14 C14 C 0 1 N N N N N N 15.486 -12.979 36.474 -2.567 -3.912 -5.773 C14 RE1 19 RE1 O7 O7 O 0 1 N N N N N N 16.770 -10.674 39.542 -3.476 -4.805 -1.927 O7 RE1 20 RE1 O8 O8 O -1 1 N N N N N N 16.981 -10.199 37.036 -5.154 -4.094 -3.847 O8 RE1 21 RE1 H1 H1 H 0 1 N N N N N N 26.392 -19.073 40.504 1.168 5.506 2.627 H1 RE1 22 RE1 H2 H2 H 0 1 N N N N N N 25.275 -19.756 39.411 1.313 3.854 2.558 H2 RE1 23 RE1 H3 H3 H 0 1 N N N N N N 26.566 -19.196 38.812 0.156 4.546 3.525 H3 RE1 24 RE1 H4 H4 H 0 1 N N N N N N 24.617 -17.391 40.384 -0.929 3.687 1.625 H4 RE1 25 RE1 H5 H5 H 0 1 N N N N N N 26.029 -16.779 39.730 -0.949 5.482 1.581 H5 RE1 26 RE1 H6 H6 H 0 1 N N N N N N 24.460 -15.562 38.566 -1.513 4.502 -0.697 H6 RE1 27 RE1 H7 H7 H 0 1 N N N N N N 23.382 -16.785 36.013 0.872 5.047 -2.278 H7 RE1 28 RE1 H8 H8 H 0 1 N N N N N N 22.136 -14.352 37.441 0.679 3.077 -3.690 H8 RE1 29 RE1 H9 H9 H 0 1 N N N N N N 21.573 -15.051 35.988 0.919 2.606 -2.014 H9 RE1 30 RE1 H10 H10 H 0 1 N N N N N N 21.190 -17.353 37.362 -1.564 2.166 -1.807 H10 RE1 31 RE1 H11 H11 H 0 1 N N N N N N 21.582 -16.541 38.761 -1.754 2.594 -3.507 H11 RE1 32 RE1 H12 H12 H 0 1 N N N N N N 19.400 -15.512 36.703 -0.024 0.317 -2.417 H12 RE1 33 RE1 H13 H13 H 0 1 N N N N N N 19.010 -16.349 38.150 -0.138 0.755 -4.122 H13 RE1 34 RE1 H14 H14 H 0 1 N N N N N N 20.185 -14.312 39.453 -2.418 -0.240 -2.328 H14 RE1 35 RE1 H15 H15 H 0 1 N N N N N N 20.199 -13.492 37.969 -2.645 0.265 -3.998 H15 RE1 36 RE1 H16 H16 H 0 1 N N N N N N 18.290 -12.937 36.974 -3.545 -2.049 -3.627 H16 RE1 37 RE1 H17 H17 H 0 1 N N N N N N 15.668 -13.243 38.591 -1.537 -4.190 -3.903 H17 RE1 38 RE1 H18 H18 H 0 1 N N N N N N 14.426 -12.634 36.526 -1.752 -3.357 -6.248 H18 RE1 39 RE1 H19 H19 H 0 1 N N N N N N 16.018 -12.534 35.601 -3.511 -3.510 -6.155 H19 RE1 40 RE1 H20 H20 H 0 1 N N N N N N 15.553 -14.054 36.185 -2.500 -4.958 -6.087 H20 RE1 41 RE1 O9 O9 O 0 1 N Y N N N N ? ? ? -3.650 -6.169 -4.044 O9 RE1 42 RE1 H9O H9O H 0 1 N Y N N N N ? ? ? -4.367 -6.524 -4.611 H9O RE1 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RE1 N2 C4 SING N N 1 RE1 N2 H1 SING N N 2 RE1 N2 H2 SING N N 3 RE1 N2 H3 SING N N 4 RE1 C4 C5 SING N N 5 RE1 C4 H4 SING N N 6 RE1 C4 H5 SING N N 7 RE1 C5 N3 SING N N 8 RE1 C5 O3 DOUB N N 9 RE1 N3 C6 SING N N 10 RE1 N3 H6 SING N N 11 RE1 C6 C7 SING N N 12 RE1 C6 C13 SING N N 13 RE1 C6 H7 SING N N 14 RE1 C7 C8 SING N N 15 RE1 C7 H8 SING N N 16 RE1 C7 H9 SING N N 17 RE1 C8 C9 SING N N 18 RE1 C8 H10 SING N N 19 RE1 C8 H11 SING N N 20 RE1 C9 C10 SING N N 21 RE1 C9 H12 SING N N 22 RE1 C9 H13 SING N N 23 RE1 C10 C11 SING N N 24 RE1 C10 H14 SING N N 25 RE1 C10 H15 SING N N 26 RE1 C11 N4 SING N N 27 RE1 C11 O6 DOUB N N 28 RE1 N4 C12 SING N N 29 RE1 N4 H16 SING N N 30 RE1 C12 P1 SING N N 31 RE1 C12 C14 SING N N 32 RE1 C12 H17 SING N N 33 RE1 P1 O7 DOUB N N 34 RE1 P1 O8 SING N N 35 RE1 C13 O4 DOUB N N 36 RE1 C13 O5 SING N N 37 RE1 C14 H18 SING N N 38 RE1 C14 H19 SING N N 39 RE1 C14 H20 SING N N 40 RE1 P1 O9 SING N N 41 RE1 O9 H9O SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RE1 SMILES ACDLabs 10.04 "[O-]P(=O)(O)C(NC(=O)CCCCC(C([O-])=O)NC(=O)C[NH3+])C" RE1 SMILES_CANONICAL CACTVS 3.341 "C[C@@H](NC(=O)CCCC[C@H](NC(=O)C[NH3+])C([O-])=O)[P](O)([O-])=O" RE1 SMILES CACTVS 3.341 "C[CH](NC(=O)CCCC[CH](NC(=O)C[NH3+])C([O-])=O)[P](O)([O-])=O" RE1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H](NC(=O)CCCC[C@@H](C(=O)[O-])NC(=O)C[NH3+])[P@](=O)(O)[O-]" RE1 SMILES "OpenEye OEToolkits" 1.5.0 "CC(NC(=O)CCCCC(C(=O)[O-])NC(=O)C[NH3+])P(=O)(O)[O-]" RE1 InChI InChI 1.03 "InChI=1S/C11H22N3O7P/c1-7(22(19,20)21)13-9(15)5-3-2-4-8(11(17)18)14-10(16)6-12/h7-8H,2-6,12H2,1H3,(H,13,15)(H,14,16)(H,17,18)(H2,19,20,21)/p-1/t7-,8-/m0/s1" RE1 InChIKey InChI 1.03 DREJXTKPUGMERN-YUMQZZPRSA-M # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RE1 "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-2-[(ammonioacetyl)amino]-7-{[(1S)-1-(hydroxyphosphinato)ethyl]amino}-7-oxoheptanoate" RE1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-(2-azaniumylethanoylamino)-7-[[(1S)-1-(hydroxy-oxido-phosphoryl)ethyl]amino]-7-oxo-heptanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RE1 "Create component" 2002-10-15 RCSB RE1 "Modify descriptor" 2011-06-04 RCSB RE1 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id RE1 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom P1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #