data_RE5
#
_chem_comp.id RE5
_chem_comp.name "L-Glutamate Tenofovir"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H21 N6 O7 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "(2~{S})-2-[[[(2~{R})-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-oxidanyl-phosphoryl]amino]pentanedioic acid"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-09-28
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 416.326
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RE5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7AIF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RE5 C04 C1 C 0 1 N N S 17.196 27.408 172.505 -2.573 -1.048 -0.144 C04 RE5 1
RE5 C05 C2 C 0 1 N N N 16.307 27.282 171.225 -2.276 -2.425 -0.680 C05 RE5 2
RE5 C08 C3 C 0 1 N N N 16.920 28.831 173.090 -4.087 -0.866 -0.017 C08 RE5 3
RE5 C09 C4 C 0 1 N N N 16.253 28.807 174.470 -4.385 0.481 0.644 C09 RE5 4
RE5 C10 C5 C 0 1 N N N 15.577 30.141 174.842 -5.876 0.661 0.769 C10 RE5 5
RE5 C13 C6 C 0 1 N N N 18.576 24.284 172.331 0.126 1.716 -1.743 C13 RE5 6
RE5 C15 C7 C 0 1 N N R 17.029 22.797 171.294 1.594 2.906 -0.268 C15 RE5 7
RE5 C16 C8 C 0 1 N N N 16.558 23.011 169.848 1.427 4.362 -0.709 C16 RE5 8
RE5 C17 C9 C 0 1 N N N 15.875 22.136 172.124 2.972 2.721 0.369 C17 RE5 9
RE5 C19 C10 C 0 1 Y N N 13.493 22.846 171.517 3.461 0.243 0.193 C19 RE5 10
RE5 C21 C11 C 0 1 Y N N 11.936 22.085 170.070 4.139 -1.214 -1.450 C21 RE5 11
RE5 C23 C12 C 0 1 Y N N 11.340 23.945 171.360 3.773 -2.104 0.648 C23 RE5 12
RE5 C25 C13 C 0 1 Y N N 12.621 23.884 171.963 3.428 -0.822 1.109 C25 RE5 13
RE5 C27 C14 C 0 1 Y N N 14.470 24.102 173.094 2.841 0.969 2.181 C27 RE5 14
RE5 N03 N1 N 0 1 N N N 18.637 27.142 172.238 -2.033 -0.038 -1.063 N03 RE5 15
RE5 N18 N2 N 0 1 Y N N 14.668 22.990 172.241 3.086 1.359 0.898 N18 RE5 16
RE5 N20 N3 N 0 1 Y N N 13.175 21.915 170.557 3.819 0.004 -1.064 N20 RE5 17
RE5 N22 N4 N 0 1 Y N N 10.984 23.035 170.398 4.122 -2.246 -0.627 N22 RE5 18
RE5 N24 N5 N 0 1 N N N 10.421 24.898 171.708 3.758 -3.192 1.503 N24 RE5 19
RE5 N26 N6 N 0 1 Y N N 13.243 24.666 172.951 3.041 -0.311 2.303 N26 RE5 20
RE5 O01 O1 O 0 1 N N N 18.455 25.650 170.074 -0.584 1.051 0.780 O01 RE5 21
RE5 O06 O2 O 0 1 N N N 16.521 28.068 170.258 -1.677 -2.551 -1.722 O06 RE5 22
RE5 O07 O3 O 0 1 N N N 15.406 26.400 171.203 -2.678 -3.511 -0.002 O07 RE5 23
RE5 O11 O4 O 0 1 N N N 14.318 30.230 174.823 -6.623 -0.200 0.370 O11 RE5 24
RE5 O12 O5 O 0 1 N N N 16.300 31.130 175.157 -6.373 1.778 1.323 O12 RE5 25
RE5 O14 O6 O 0 1 N N N 17.258 24.029 171.923 1.474 2.048 -1.404 O14 RE5 26
RE5 O28 O7 O 0 1 N N N 20.706 25.662 171.350 0.495 -0.799 -0.555 O28 RE5 27
RE5 P02 P1 P 0 1 N N N 19.220 25.831 171.352 -0.502 0.464 -0.576 P02 RE5 28
RE5 H1 H1 H 0 1 N N N 16.834 26.671 173.236 -2.110 -0.933 0.836 H1 RE5 29
RE5 H2 H2 H 0 1 N N N 17.878 29.364 173.176 -4.540 -0.893 -1.008 H2 RE5 30
RE5 H3 H3 H 0 1 N N N 16.261 29.371 172.394 -4.500 -1.669 0.594 H3 RE5 31
RE5 H4 H4 H 0 1 N N N 15.490 28.015 174.475 -3.931 0.508 1.635 H4 RE5 32
RE5 H5 H5 H 0 1 N N N 17.020 28.582 175.225 -3.972 1.284 0.033 H5 RE5 33
RE5 H6 H6 H 0 1 N N N 19.210 23.413 172.111 -0.494 2.610 -1.685 H6 RE5 34
RE5 H7 H7 H 0 1 N N N 18.599 24.490 173.411 0.094 1.316 -2.756 H7 RE5 35
RE5 H8 H8 H 0 1 N N N 17.918 22.149 171.312 0.821 2.656 0.459 H8 RE5 36
RE5 H9 H9 H 0 1 N N N 16.383 22.036 169.371 0.482 4.475 -1.240 H9 RE5 37
RE5 H10 H10 H 0 1 N N N 15.623 23.591 169.849 1.431 5.010 0.168 H10 RE5 38
RE5 H11 H11 H 0 1 N N N 17.330 23.560 169.289 2.250 4.638 -1.368 H11 RE5 39
RE5 H12 H12 H 0 1 N N N 15.589 21.194 171.634 3.745 2.884 -0.382 H12 RE5 40
RE5 H13 H13 H 0 1 N N N 16.251 21.924 173.136 3.097 3.437 1.181 H13 RE5 41
RE5 H14 H14 H 0 1 N N N 11.638 21.377 169.311 4.429 -1.373 -2.478 H14 RE5 42
RE5 H15 H15 H 0 1 N N N 15.216 24.464 173.786 2.526 1.625 2.979 H15 RE5 43
RE5 H16 H16 H 0 1 N N N 19.068 27.071 173.138 -2.662 0.748 -1.146 H16 RE5 44
RE5 H17 H17 H 0 1 N N N 9.587 24.769 171.172 3.508 -3.074 2.433 H17 RE5 45
RE5 H18 H18 H 0 1 N N N 10.207 24.815 172.681 3.999 -4.072 1.173 H18 RE5 46
RE5 H19 H19 H 0 1 N N N 14.947 26.436 170.372 -2.464 -4.373 -0.386 H19 RE5 47
RE5 H20 H20 H 0 1 N N N 15.747 31.877 175.355 -7.336 1.848 1.381 H20 RE5 48
RE5 H21 H21 H 0 1 N N N 20.999 25.445 170.473 0.597 -1.234 -1.413 H21 RE5 49
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RE5 C16 C15 SING N N 1
RE5 C21 N22 DOUB Y N 2
RE5 C21 N20 SING Y N 3
RE5 O01 P02 DOUB N N 4
RE5 O06 C05 DOUB N N 5
RE5 N22 C23 SING Y N 6
RE5 N20 C19 DOUB Y N 7
RE5 O07 C05 SING N N 8
RE5 C05 C04 SING N N 9
RE5 C15 O14 SING N N 10
RE5 C15 C17 SING N N 11
RE5 O28 P02 SING N N 12
RE5 P02 N03 SING N N 13
RE5 P02 C13 SING N N 14
RE5 C23 N24 SING N N 15
RE5 C23 C25 DOUB Y N 16
RE5 C19 C25 SING Y N 17
RE5 C19 N18 SING Y N 18
RE5 O14 C13 SING N N 19
RE5 C25 N26 SING Y N 20
RE5 C17 N18 SING N N 21
RE5 N03 C04 SING N N 22
RE5 N18 C27 SING Y N 23
RE5 C04 C08 SING N N 24
RE5 N26 C27 DOUB Y N 25
RE5 C08 C09 SING N N 26
RE5 C09 C10 SING N N 27
RE5 O11 C10 DOUB N N 28
RE5 C10 O12 SING N N 29
RE5 C04 H1 SING N N 30
RE5 C08 H2 SING N N 31
RE5 C08 H3 SING N N 32
RE5 C09 H4 SING N N 33
RE5 C09 H5 SING N N 34
RE5 C13 H6 SING N N 35
RE5 C13 H7 SING N N 36
RE5 C15 H8 SING N N 37
RE5 C16 H9 SING N N 38
RE5 C16 H10 SING N N 39
RE5 C16 H11 SING N N 40
RE5 C17 H12 SING N N 41
RE5 C17 H13 SING N N 42
RE5 C21 H14 SING N N 43
RE5 C27 H15 SING N N 44
RE5 N03 H16 SING N N 45
RE5 N24 H17 SING N N 46
RE5 N24 H18 SING N N 47
RE5 O07 H19 SING N N 48
RE5 O12 H20 SING N N 49
RE5 O28 H21 SING N N 50
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RE5 InChI InChI 1.03 "InChI=1S/C14H21N6O7P/c1-8(4-20-6-18-11-12(15)16-5-17-13(11)20)27-7-28(25,26)19-9(14(23)24)2-3-10(21)22/h5-6,8-9H,2-4,7H2,1H3,(H,21,22)(H,23,24)(H2,15,16,17)(H2,19,25,26)/t8-,9+/m1/s1"
RE5 InChIKey InChI 1.03 CIXAAKVRZFPIJB-BDAKNGLRSA-N
RE5 SMILES_CANONICAL CACTVS 3.385 "C[C@H](Cn1cnc2c(N)ncnc12)OC[P](O)(=O)N[C@@H](CCC(O)=O)C(O)=O"
RE5 SMILES CACTVS 3.385 "C[CH](Cn1cnc2c(N)ncnc12)OC[P](O)(=O)N[CH](CCC(O)=O)C(O)=O"
RE5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](Cn1cnc2c1ncnc2N)OCP(=O)(N[C@@H](CCC(=O)O)C(=O)O)O"
RE5 SMILES "OpenEye OEToolkits" 2.0.7 "CC(Cn1cnc2c1ncnc2N)OCP(=O)(NC(CCC(=O)O)C(=O)O)O"
#
_pdbx_chem_comp_identifier.comp_id RE5
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[[(2~{R})-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-oxidanyl-phosphoryl]amino]pentanedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RE5 "Create component" 2020-09-28 PDBE
RE5 "Initial release" 2021-01-13 RCSB
RE5 "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id RE5
_pdbx_chem_comp_synonyms.name "(2~{S})-2-[[[(2~{R})-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-oxidanyl-phosphoryl]amino]pentanedioic acid"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##