data_RED # _chem_comp.id RED _chem_comp.name "DIHYDROLIPOIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H16 O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-01-11 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 208.341 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RED _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DXM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RED C1 C1 C 0 1 N N N N N N 21.478 -9.114 8.858 0.295 0.033 4.852 C1 RED 1 RED O1 O1 O 0 1 N N N N N N 21.617 -7.979 8.386 1.349 0.619 4.787 O1 RED 2 RED OXT OXT O 0 1 N Y N N N N 20.479 -9.936 8.469 -0.250 -0.236 6.049 OXT RED 3 RED C2 C2 C 0 1 N N N N N N 22.474 -9.606 9.894 -0.408 -0.394 3.590 C2 RED 4 RED C3 C3 C 0 1 N N N N N N 23.900 -9.132 9.592 0.418 0.031 2.376 C3 RED 5 RED C4 C4 C 0 1 N N N N N N 24.528 -9.920 8.440 -0.295 -0.403 1.094 C4 RED 6 RED C5 C5 C 0 1 N N N N N N 25.976 -9.511 8.185 0.531 0.023 -0.119 C5 RED 7 RED C6 C6 C 0 1 N N R N N N 26.824 -10.595 7.508 -0.182 -0.411 -1.401 C6 RED 8 RED C7 C7 C 0 1 N N N N N N 26.839 -11.876 8.346 0.644 0.015 -2.615 C7 RED 9 RED C8 C8 C 0 1 N N N N N N 27.801 -12.926 7.822 -0.069 -0.419 -3.897 C8 RED 10 RED S8 S8 S 0 1 N N N N N N 27.652 -14.529 8.619 0.911 0.085 -5.337 S8 RED 11 RED S6 S6 S 0 1 N N N N N N 28.467 -10.071 7.012 -1.816 0.372 -1.477 S6 RED 12 RED HO HO H 0 1 N N N N N N 20.372 -10.807 8.831 0.201 0.038 6.859 HO RED 13 RED H22 2H2 H 0 1 N N N N N N 22.161 -9.316 10.924 -0.524 -1.478 3.588 H22 RED 14 RED H21 1H2 H 0 1 N N N N N N 22.430 -10.715 10.001 -1.390 0.075 3.544 H21 RED 15 RED H32 2H3 H 0 1 N N N N N N 23.930 -8.034 9.397 0.534 1.115 2.377 H32 RED 16 RED H31 1H3 H 0 1 N N N N N N 24.540 -9.165 10.503 1.400 -0.439 2.422 H31 RED 17 RED H42 2H4 H 0 1 N N N N N N 24.442 -11.018 8.609 -0.411 -1.486 1.093 H42 RED 18 RED H41 1H4 H 0 1 N N N N N N 23.915 -9.835 7.512 -1.277 0.067 1.048 H41 RED 19 RED H52 2H5 H 0 1 N N N N N N 26.016 -8.561 7.601 0.647 1.107 -0.118 H52 RED 20 RED H51 1H5 H 0 1 N N N N N N 26.458 -9.172 9.131 1.513 -0.447 -0.073 H51 RED 21 RED H6 H6 H 0 1 N N N N N N 26.317 -10.815 6.539 -0.298 -1.495 -1.403 H6 RED 22 RED H72 2H7 H 0 1 N N N N N N 27.048 -11.646 9.416 0.760 1.098 -2.614 H72 RED 23 RED H71 1H7 H 0 1 N N N N N N 25.810 -12.295 8.445 1.626 -0.455 -2.569 H71 RED 24 RED H82 2H8 H 0 1 N N N N N N 27.699 -13.029 6.716 -0.185 -1.503 -3.898 H82 RED 25 RED H81 1H8 H 0 1 N N N N N N 28.851 -12.556 7.883 -1.051 0.051 -3.943 H81 RED 26 RED H8S H8S H 0 1 N N N N N N 28.254 -15.186 8.290 0.128 -0.378 -6.327 H8S RED 27 RED H6S H6S H 0 1 N N N N N N 28.992 -10.742 6.592 -1.455 1.667 -1.465 H6S RED 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RED C1 O1 DOUB N N 1 RED C1 OXT SING N N 2 RED C1 C2 SING N N 3 RED OXT HO SING N N 4 RED C2 C3 SING N N 5 RED C2 H22 SING N N 6 RED C2 H21 SING N N 7 RED C3 C4 SING N N 8 RED C3 H32 SING N N 9 RED C3 H31 SING N N 10 RED C4 C5 SING N N 11 RED C4 H42 SING N N 12 RED C4 H41 SING N N 13 RED C5 C6 SING N N 14 RED C5 H52 SING N N 15 RED C5 H51 SING N N 16 RED C6 C7 SING N N 17 RED C6 S6 SING N N 18 RED C6 H6 SING N N 19 RED C7 C8 SING N N 20 RED C7 H72 SING N N 21 RED C7 H71 SING N N 22 RED C8 S8 SING N N 23 RED C8 H82 SING N N 24 RED C8 H81 SING N N 25 RED S8 H8S SING N N 26 RED S6 H6S SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RED SMILES ACDLabs 10.04 "O=C(O)CCCCC(S)CCS" RED SMILES_CANONICAL CACTVS 3.341 "OC(=O)CCCC[C@@H](S)CCS" RED SMILES CACTVS 3.341 "OC(=O)CCCC[CH](S)CCS" RED SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CCC(=O)O)C[C@H](CCS)S" RED SMILES "OpenEye OEToolkits" 1.5.0 "C(CCC(=O)O)CC(CCS)S" RED InChI InChI 1.03 "InChI=1S/C8H16O2S2/c9-8(10)4-2-1-3-7(12)5-6-11/h7,11-12H,1-6H2,(H,9,10)/t7-/m1/s1" RED InChIKey InChI 1.03 IZFHEQBZOYJLPK-SSDOTTSWSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RED "SYSTEMATIC NAME" ACDLabs 10.04 "(6R)-6,8-disulfanyloctanoic acid" RED "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(6R)-6,8-bis-sulfanyloctanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RED "Create component" 2000-01-11 EBI RED "Modify descriptor" 2011-06-04 RCSB RED "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id RED _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type Lipoylation _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession PTM-0383 #