data_REK
#
_chem_comp.id REK
_chem_comp.name "D-Aspartate Tenofovir"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H19 N6 O7 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "(2~{R})-2-[[[(2~{R})-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-oxidanyl-phosphoryl]amino]butanedioic acid"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-09-28
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 402.300
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code REK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7AID
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
REK C04 C1 C 0 1 N N R -5.356 -44.670 130.716 3.127 -0.006 -0.451 C04 REK 1
REK C05 C2 C 0 1 N N N -5.418 -45.897 129.735 3.651 0.971 -1.471 C05 REK 2
REK C08 C3 C 0 1 N N N -6.590 -44.777 131.657 4.287 -0.830 0.109 C08 REK 3
REK C09 C4 C 0 1 N N N -7.132 -43.460 132.270 3.749 -1.889 1.038 C09 REK 4
REK C12 C5 C 0 1 N N N -1.602 -46.104 131.352 0.054 1.764 1.765 C12 REK 5
REK C14 C6 C 0 1 N N R -1.967 -48.051 132.773 -1.852 2.662 0.623 C14 REK 6
REK C15 C7 C 0 1 N N N -0.612 -48.472 132.144 -1.995 4.057 1.234 C15 REK 7
REK C16 C8 C 0 1 N N N -3.102 -49.037 132.258 -3.216 2.184 0.119 C16 REK 8
REK C18 C9 C 0 1 Y N N -5.549 -49.671 132.998 -3.042 -0.339 0.013 C18 REK 9
REK C20 C10 C 0 1 Y N N -6.751 -51.594 133.111 -3.101 -2.082 1.509 C20 REK 10
REK C22 C11 C 0 1 Y N N -7.872 -49.646 133.794 -2.817 -2.626 -0.716 C22 REK 11
REK C24 C12 C 0 1 Y N N -6.675 -48.920 133.498 -2.871 -1.259 -1.036 C24 REK 12
REK C26 C13 C 0 1 Y N N -5.033 -47.511 133.157 -2.903 0.723 -1.915 C26 REK 13
REK N03 N1 N 0 1 N N N -4.057 -44.559 131.431 2.477 0.730 0.642 N03 REK 14
REK N17 N2 N 0 1 Y N N -4.497 -48.768 132.781 -3.059 0.902 -0.572 N17 REK 15
REK N19 N3 N 0 1 Y N N -5.568 -51.032 132.794 -3.152 -0.791 1.257 N19 REK 16
REK N21 N4 N 0 1 Y N N -7.904 -50.997 133.596 -2.941 -2.984 0.558 N21 REK 17
REK N23 N5 N 0 1 N N N -9.034 -49.057 134.282 -2.651 -3.579 -1.706 N23 REK 18
REK N25 N6 N 0 1 Y N N -6.317 -47.563 133.587 -2.793 -0.545 -2.184 N25 REK 19
REK O01 O1 O 0 1 N N N -2.560 -44.622 129.229 0.561 1.560 -0.883 O01 REK 20
REK O06 O2 O 0 1 N N N -6.397 -45.970 128.946 3.499 2.158 -1.306 O06 REK 21
REK O07 O3 O 0 1 N N N -4.508 -46.765 129.762 4.287 0.522 -2.565 O07 REK 22
REK O10 O4 O 0 1 N N N -8.353 -43.174 132.124 2.560 -1.974 1.232 O10 REK 23
REK O11 O5 O 0 1 N N N -6.344 -42.706 132.902 4.592 -2.736 1.649 O11 REK 24
REK O13 O6 O 0 1 N N N -2.300 -46.708 132.427 -1.367 1.755 1.615 O13 REK 25
REK O27 O7 O 0 1 N N N -1.688 -43.422 131.329 0.182 -0.631 0.311 O27 REK 26
REK P02 P1 P 0 1 N N N -2.533 -44.503 130.732 0.817 0.846 0.388 P02 REK 27
REK H1 H1 H 0 1 N N N -5.488 -43.764 130.107 2.403 -0.670 -0.922 H1 REK 28
REK H2 H2 H 0 1 N N N -7.407 -45.234 131.080 4.824 -1.306 -0.711 H2 REK 29
REK H3 H3 H 0 1 N N N -6.314 -45.440 132.490 4.966 -0.177 0.658 H3 REK 30
REK H4 H4 H 0 1 N N N -1.527 -46.822 130.522 0.413 2.793 1.759 H4 REK 31
REK H5 H5 H 0 1 N N N -0.592 -45.826 131.688 0.322 1.292 2.710 H5 REK 32
REK H6 H6 H 0 1 N N N -1.893 -48.156 133.866 -1.150 2.700 -0.209 H6 REK 33
REK H7 H7 H 0 1 N N N 0.181 -47.795 132.494 -1.011 4.434 1.513 H7 REK 34
REK H8 H8 H 0 1 N N N -0.373 -49.503 132.444 -2.448 4.729 0.505 H8 REK 35
REK H9 H9 H 0 1 N N N -0.684 -48.416 131.048 -2.628 4.003 2.120 H9 REK 36
REK H10 H10 H 0 1 N N N -3.135 -48.970 131.161 -3.893 2.061 0.964 H10 REK 37
REK H11 H11 H 0 1 N N N -2.822 -50.058 132.555 -3.626 2.921 -0.572 H11 REK 38
REK H12 H12 H 0 1 N N N -6.809 -52.663 132.966 -3.197 -2.416 2.532 H12 REK 39
REK H13 H13 H 0 1 N N N -4.468 -46.592 133.105 -2.876 1.517 -2.647 H13 REK 40
REK H14 H14 H 0 1 N N N -4.127 -43.718 131.968 2.677 0.303 1.535 H14 REK 41
REK H15 H15 H 0 1 N N N -9.734 -49.759 134.413 -2.569 -3.305 -2.633 H15 REK 42
REK H16 H16 H 0 1 N N N -8.840 -48.613 135.157 -2.615 -4.519 -1.472 H16 REK 43
REK H17 H17 H 0 1 N N N -4.692 -47.437 129.117 4.606 1.186 -3.191 H17 REK 44
REK H18 H18 H 0 1 N N N -6.818 -41.945 133.218 4.200 -3.398 2.236 H18 REK 45
REK H19 H19 H 0 1 N N N -1.262 -42.933 130.635 0.311 -1.158 1.111 H19 REK 46
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
REK O06 C05 DOUB N N 1
REK O01 P02 DOUB N N 2
REK C05 O07 SING N N 3
REK C05 C04 SING N N 4
REK C04 N03 SING N N 5
REK C04 C08 SING N N 6
REK P02 O27 SING N N 7
REK P02 C12 SING N N 8
REK P02 N03 SING N N 9
REK C12 O13 SING N N 10
REK C08 C09 SING N N 11
REK O10 C09 DOUB N N 12
REK C15 C14 SING N N 13
REK C16 C14 SING N N 14
REK C16 N17 SING N N 15
REK C09 O11 SING N N 16
REK O13 C14 SING N N 17
REK N17 C18 SING Y N 18
REK N17 C26 SING Y N 19
REK N19 C18 DOUB Y N 20
REK N19 C20 SING Y N 21
REK C18 C24 SING Y N 22
REK C20 N21 DOUB Y N 23
REK C26 N25 DOUB Y N 24
REK C24 N25 SING Y N 25
REK C24 C22 DOUB Y N 26
REK N21 C22 SING Y N 27
REK C22 N23 SING N N 28
REK C04 H1 SING N N 29
REK C08 H2 SING N N 30
REK C08 H3 SING N N 31
REK C12 H4 SING N N 32
REK C12 H5 SING N N 33
REK C14 H6 SING N N 34
REK C15 H7 SING N N 35
REK C15 H8 SING N N 36
REK C15 H9 SING N N 37
REK C16 H10 SING N N 38
REK C16 H11 SING N N 39
REK C20 H12 SING N N 40
REK C26 H13 SING N N 41
REK N03 H14 SING N N 42
REK N23 H15 SING N N 43
REK N23 H16 SING N N 44
REK O07 H17 SING N N 45
REK O11 H18 SING N N 46
REK O27 H19 SING N N 47
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
REK InChI InChI 1.03 "InChI=1S/C13H19N6O7P/c1-7(3-19-5-17-10-11(14)15-4-16-12(10)19)26-6-27(24,25)18-8(13(22)23)2-9(20)21/h4-5,7-8H,2-3,6H2,1H3,(H,20,21)(H,22,23)(H2,14,15,16)(H2,18,24,25)/t7-,8-/m1/s1"
REK InChIKey InChI 1.03 YBOHKRVDTZQCCV-HTQZYQBOSA-N
REK SMILES_CANONICAL CACTVS 3.385 "C[C@H](Cn1cnc2c(N)ncnc12)OC[P](O)(=O)N[C@H](CC(O)=O)C(O)=O"
REK SMILES CACTVS 3.385 "C[CH](Cn1cnc2c(N)ncnc12)OC[P](O)(=O)N[CH](CC(O)=O)C(O)=O"
REK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](Cn1cnc2c1ncnc2N)OCP(=O)(N[C@H](CC(=O)O)C(=O)O)O"
REK SMILES "OpenEye OEToolkits" 2.0.7 "CC(Cn1cnc2c1ncnc2N)OCP(=O)(NC(CC(=O)O)C(=O)O)O"
#
_pdbx_chem_comp_identifier.comp_id REK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{R})-2-[[[(2~{R})-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-oxidanyl-phosphoryl]amino]butanedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
REK "Create component" 2020-09-28 PDBE
REK "Initial release" 2021-01-13 RCSB
REK "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id REK
_pdbx_chem_comp_synonyms.name "(2~{R})-2-[[[(2~{R})-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-oxidanyl-phosphoryl]amino]butanedioic acid"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##