data_RET # _chem_comp.id RET _chem_comp.name RETINAL _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H28 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 284.436 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RET _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1OPB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RET C1 C1 C 0 1 N N N -5.590 13.158 53.080 -4.327 0.909 -0.480 C1 RET 1 RET C2 C2 C 0 1 N N N -4.929 11.803 53.442 -5.466 0.132 -1.143 C2 RET 2 RET C3 C3 C 0 1 N N N -3.621 11.861 53.982 -5.998 -0.901 -0.142 C3 RET 3 RET C4 C4 C 0 1 N N N -2.648 12.661 53.187 -4.921 -1.966 0.075 C4 RET 4 RET C5 C5 C 0 1 N N N -3.256 13.719 52.298 -3.604 -1.314 0.380 C5 RET 5 RET C6 C6 C 0 1 N N N -4.574 14.002 52.251 -3.340 -0.042 0.131 C6 RET 6 RET C7 C7 C 0 1 N N N -5.044 15.082 51.321 -2.051 0.450 0.458 C7 RET 7 RET C8 C8 C 0 1 N N N -6.101 15.895 51.358 -0.944 -0.145 -0.059 C8 RET 8 RET C9 C9 C 0 1 N N N -6.459 16.916 50.367 0.334 0.315 0.300 C9 RET 9 RET C10 C10 C 0 1 N N N -7.569 17.648 50.602 1.446 -0.283 -0.220 C10 RET 10 RET C11 C11 C 0 1 N N N -8.141 18.699 49.798 2.720 0.176 0.138 C11 RET 11 RET C12 C12 C 0 1 N N N -9.328 19.245 50.048 3.842 -0.427 -0.387 C12 RET 12 RET C13 C13 C 0 1 N N N -10.012 20.306 49.302 5.115 0.031 -0.030 C13 RET 13 RET C14 C14 C 0 1 N N N -11.232 20.649 49.763 6.238 -0.573 -0.555 C14 RET 14 RET C15 C15 C 0 1 N N N -12.134 21.659 49.229 7.510 -0.115 -0.198 C15 RET 15 RET O1 O1 O 0 1 N Y N -13.374 21.346 48.614 8.500 -0.648 -0.661 O1 RET 16 RET C16 C16 C 0 1 N N N -6.839 12.703 52.333 -3.620 1.768 -1.531 C16 RET 17 RET C17 C17 C 0 1 N N N -6.072 13.878 54.344 -4.899 1.816 0.611 C17 RET 18 RET C18 C18 C 0 1 N N N -2.187 14.357 51.431 -2.522 -2.155 1.006 C18 RET 19 RET C19 C19 C 0 1 N N N -5.585 17.081 49.160 0.478 1.469 1.259 C19 RET 20 RET C20 C20 C 0 1 N N N -9.562 20.581 47.903 5.259 1.185 0.929 C20 RET 21 RET H21 H21 H 0 1 N N N -5.570 11.320 54.194 -6.266 0.819 -1.419 H21 RET 22 RET H22 H22 H 0 1 N N N -4.872 11.212 52.516 -5.093 -0.377 -2.032 H22 RET 23 RET H31 H31 H 0 1 N N N -3.692 12.317 54.981 -6.225 -0.411 0.804 H31 RET 24 RET H32 H32 H 0 1 N N N -3.238 10.832 54.041 -6.898 -1.368 -0.542 H32 RET 25 RET H41 H41 H 0 1 N N N -1.977 13.168 53.896 -5.209 -2.606 0.910 H41 RET 26 RET H42 H42 H 0 1 N N N -2.094 11.964 52.542 -4.824 -2.572 -0.825 H42 RET 27 RET H7 H7 H 0 1 N N N -4.407 15.228 50.461 -1.949 1.298 1.119 H7 RET 28 RET H8 H8 H 0 1 N N N -6.762 15.791 52.206 -1.047 -0.972 -0.747 H8 RET 29 RET H10 H10 H 0 1 N N N -8.099 17.415 51.514 1.343 -1.109 -0.908 H10 RET 30 RET H11 H11 H 0 1 N N N -7.578 19.061 48.951 2.823 1.003 0.825 H11 RET 31 RET H12 H12 H 0 1 N N N -9.854 18.858 50.908 3.740 -1.254 -1.074 H12 RET 32 RET H14 H14 H 0 1 N N N -11.581 20.110 50.632 6.135 -1.400 -1.242 H14 RET 33 RET H15 H15 H 0 1 N N N -11.846 22.697 49.305 7.613 0.712 0.489 H15 RET 34 RET H161 H161 H 0 0 N N N -7.415 13.583 52.011 -4.351 2.401 -2.035 H161 RET 35 RET H162 H162 H 0 0 N N N -6.545 12.115 51.451 -2.872 2.394 -1.045 H162 RET 36 RET H163 H163 H 0 0 N N N -7.458 12.083 52.998 -3.134 1.122 -2.262 H163 RET 37 RET H171 H171 H 0 0 N N N -6.537 14.835 54.066 -5.409 1.209 1.359 H171 RET 38 RET H172 H172 H 0 0 N N N -6.809 13.250 54.865 -4.089 2.371 1.084 H172 RET 39 RET H173 H173 H 0 0 N N N -5.215 14.066 55.008 -5.608 2.516 0.167 H173 RET 40 RET H181 H181 H 0 0 N N N -2.644 15.125 50.790 -2.917 -3.145 1.234 H181 RET 41 RET H182 H182 H 0 0 N N N -1.424 14.822 52.073 -1.686 -2.248 0.312 H182 RET 42 RET H183 H183 H 0 0 N N N -1.717 13.586 50.802 -2.179 -1.681 1.926 H183 RET 43 RET H191 H191 H 0 0 N N N -5.988 17.881 48.521 0.528 1.089 2.279 H191 RET 44 RET H192 H192 H 0 0 N N N -4.566 17.345 49.479 1.391 2.019 1.031 H192 RET 45 RET H193 H193 H 0 0 N N N -5.560 16.138 48.594 -0.381 2.133 1.160 H193 RET 46 RET H201 H201 H 0 0 N N N -10.165 21.397 47.477 5.309 0.805 1.950 H201 RET 47 RET H202 H202 H 0 0 N N N -8.502 20.874 47.910 6.172 1.735 0.701 H202 RET 48 RET H203 H203 H 0 0 N N N -9.688 19.675 47.293 4.400 1.849 0.830 H203 RET 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RET C1 C2 SING N N 1 RET C1 C6 SING N N 2 RET C1 C16 SING N N 3 RET C1 C17 SING N N 4 RET C2 C3 SING N N 5 RET C2 H21 SING N N 6 RET C2 H22 SING N N 7 RET C3 C4 SING N N 8 RET C3 H31 SING N N 9 RET C3 H32 SING N N 10 RET C4 C5 SING N N 11 RET C4 H41 SING N N 12 RET C4 H42 SING N N 13 RET C5 C6 DOUB N N 14 RET C5 C18 SING N N 15 RET C6 C7 SING N N 16 RET C7 C8 DOUB N E 17 RET C7 H7 SING N N 18 RET C8 C9 SING N N 19 RET C8 H8 SING N N 20 RET C9 C10 DOUB N E 21 RET C9 C19 SING N N 22 RET C10 C11 SING N N 23 RET C10 H10 SING N N 24 RET C11 C12 DOUB N E 25 RET C11 H11 SING N N 26 RET C12 C13 SING N N 27 RET C12 H12 SING N N 28 RET C13 C14 DOUB N E 29 RET C13 C20 SING N N 30 RET C14 C15 SING N N 31 RET C14 H14 SING N N 32 RET C15 O1 DOUB N N 33 RET C15 H15 SING N N 34 RET C16 H161 SING N N 35 RET C16 H162 SING N N 36 RET C16 H163 SING N N 37 RET C17 H171 SING N N 38 RET C17 H172 SING N N 39 RET C17 H173 SING N N 40 RET C18 H181 SING N N 41 RET C18 H182 SING N N 42 RET C18 H183 SING N N 43 RET C19 H191 SING N N 44 RET C19 H192 SING N N 45 RET C19 H193 SING N N 46 RET C20 H201 SING N N 47 RET C20 H202 SING N N 48 RET C20 H203 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RET SMILES ACDLabs 12.01 "O=C\C=C(\C=C\C=C(\C=C\C1=C(C)CCCC1(C)C)C)C" RET SMILES_CANONICAL CACTVS 3.370 "CC(=C\C=O)/C=C/C=C(C)/C=C/C1=C(C)CCCC1(C)C" RET SMILES CACTVS 3.370 "CC(=CC=O)C=CC=C(C)C=CC1=C(C)CCCC1(C)C" RET SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/C=O)/C)/C" RET SMILES "OpenEye OEToolkits" 1.7.0 "CC1=C(C(CCC1)(C)C)C=CC(=CC=CC(=CC=O)C)C" RET InChI InChI 1.03 "InChI=1S/C20H28O/c1-16(8-6-9-17(2)13-15-21)11-12-19-18(3)10-7-14-20(19,4)5/h6,8-9,11-13,15H,7,10,14H2,1-5H3/b9-6+,12-11+,16-8+,17-13+" RET InChIKey InChI 1.03 NCYCYZXNIZJOKI-OVSJKPMPSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RET "SYSTEMATIC NAME" ACDLabs 12.01 retinal RET "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,4,6,8-tetraenal" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RET "Create component" 1999-07-08 EBI RET "Other modification" 2010-12-03 RCSB RET "Modify descriptor" 2011-06-04 RCSB #