data_RFE
#
_chem_comp.id RFE
_chem_comp.name "L-Methionine Tenofovir"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H23 N6 O5 P S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "(2~{S})-2-[[[(2~{R})-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-oxidanyl-phosphoryl]amino]-4-methylsulfanyl-butanoic acid"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-09-28
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 418.408
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RFE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7AIJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RFE C03 C1 C 0 1 N N N -1.417 -47.171 130.009 -0.097 1.611 1.815 C03 RFE 1
RFE C05 C2 C 0 1 N N R -2.138 -47.639 132.198 -1.484 2.910 0.354 C05 RFE 2
RFE C06 C3 C 0 1 N N N -1.680 -49.087 132.424 -1.254 4.341 0.844 C06 RFE 3
RFE C07 C4 C 0 1 N N N -3.322 -47.252 133.218 -2.860 2.812 -0.306 C07 RFE 4
RFE C09 C5 C 0 1 Y N N -5.170 -49.154 132.854 -3.470 0.357 -0.216 C09 RFE 5
RFE C11 C6 C 0 1 Y N N -5.305 -51.412 132.579 -4.235 -1.117 1.373 C11 RFE 6
RFE C13 C7 C 0 1 Y N N -7.336 -50.278 132.569 -3.887 -1.958 -0.748 C13 RFE 7
RFE C15 C8 C 0 1 Y N N -6.605 -49.079 132.762 -3.474 -0.680 -1.164 C15 RFE 8
RFE C17 C9 C 0 1 Y N N -5.889 -47.039 133.053 -2.786 1.113 -2.171 C17 RFE 9
RFE C19 C10 C 0 1 N N S -3.790 -44.698 130.023 2.505 -1.228 0.185 C19 RFE 10
RFE C20 C11 C 0 1 N N N -5.015 -45.611 129.628 2.141 -2.603 0.683 C20 RFE 11
RFE C23 C12 C 0 1 N N N -4.428 -43.277 130.311 4.027 -1.109 0.085 C23 RFE 12
RFE C24 C13 C 0 1 N N N -4.217 -42.748 131.738 4.393 0.241 -0.537 C24 RFE 13
RFE C26 C14 C 0 1 N N N -7.206 -42.735 131.448 6.431 2.018 -1.403 C26 RFE 14
RFE N08 N1 N 0 1 Y N N -4.711 -47.835 133.028 -3.032 1.474 -0.880 N08 RFE 15
RFE N10 N2 N 0 1 Y N N -4.487 -50.353 132.763 -3.858 0.096 1.029 N10 RFE 16
RFE N12 N3 N 0 1 Y N N -6.672 -51.477 132.475 -4.249 -2.125 0.519 N12 RFE 17
RFE N14 N4 N 0 1 N N N -8.704 -50.323 132.466 -3.912 -3.018 -1.637 N14 RFE 18
RFE N16 N5 N 0 1 Y N N -7.027 -47.751 132.888 -3.046 -0.152 -2.335 N16 RFE 19
RFE N18 N6 N 0 1 N N N -2.689 -44.707 129.036 1.996 -0.217 1.122 N18 RFE 20
RFE O01 O1 O 0 1 N N N -2.914 -47.014 127.772 0.623 0.979 -0.714 O01 RFE 21
RFE O04 O2 O 0 1 N N N -2.535 -47.420 130.849 -1.423 2.012 1.464 O04 RFE 22
RFE O21 O3 O 0 1 N N N -5.825 -45.955 130.523 2.506 -3.688 -0.018 O21 RFE 23
RFE O22 O4 O 0 1 N N N -5.108 -45.942 128.422 1.520 -2.728 1.712 O22 RFE 24
RFE O27 O5 O 0 1 N N N -0.553 -45.781 127.908 -0.555 -0.855 0.559 O27 RFE 25
RFE P02 P1 P 0 1 N N N -1.912 -46.127 128.429 0.496 0.363 0.626 P02 RFE 26
RFE S25 S1 S 0 1 N N N -5.839 -42.279 132.547 6.198 0.382 -0.656 S25 RFE 27
RFE H1 H1 H 0 1 N N N -0.996 -48.133 129.682 0.564 2.478 1.791 H1 RFE 28
RFE H2 H2 H 0 1 N N N -0.659 -46.614 130.580 -0.099 1.185 2.818 H2 RFE 29
RFE H3 H3 H 0 1 N N N -1.289 -46.981 132.433 -0.713 2.645 -0.370 H3 RFE 30
RFE H4 H4 H 0 1 N N N -1.382 -49.218 133.475 -1.388 5.035 0.013 H4 RFE 31
RFE H5 H5 H 0 1 N N N -2.507 -49.774 132.189 -1.970 4.575 1.632 H5 RFE 32
RFE H6 H6 H 0 1 N N N -0.824 -49.307 131.770 -0.240 4.434 1.234 H6 RFE 33
RFE H7 H7 H 0 1 N N N -2.987 -47.552 134.222 -3.635 2.989 0.440 H7 RFE 34
RFE H8 H8 H 0 1 N N N -3.429 -46.158 133.179 -2.938 3.559 -1.096 H8 RFE 35
RFE H9 H9 H 0 1 N N N -4.801 -52.364 132.501 -4.544 -1.296 2.393 H9 RFE 36
RFE H10 H10 H 0 1 N N N -5.876 -45.968 133.191 -2.429 1.778 -2.943 H10 RFE 37
RFE H11 H11 H 0 1 N N N -3.400 -45.076 130.979 2.063 -1.068 -0.798 H11 RFE 38
RFE H12 H12 H 0 1 N N N -3.984 -42.555 129.610 4.464 -1.180 1.081 H12 RFE 39
RFE H13 H13 H 0 1 N N N -5.511 -43.346 130.129 4.414 -1.913 -0.540 H13 RFE 40
RFE H14 H14 H 0 1 N N N -3.731 -43.530 132.340 3.957 0.312 -1.533 H14 RFE 41
RFE H15 H15 H 0 1 N N N -3.569 -41.860 131.697 4.006 1.046 0.088 H15 RFE 42
RFE H16 H16 H 0 1 N N N -8.162 -42.462 131.918 5.993 2.779 -0.757 H16 RFE 43
RFE H17 H17 H 0 1 N N N -7.102 -42.201 130.492 7.496 2.214 -1.524 H17 RFE 44
RFE H18 H18 H 0 1 N N N -7.184 -43.820 131.266 5.943 2.045 -2.378 H18 RFE 45
RFE H19 H19 H 0 1 N N N -8.998 -51.270 132.333 -3.643 -2.884 -2.560 H19 RFE 46
RFE H20 H20 H 0 1 N N N -9.113 -49.961 133.304 -4.199 -3.895 -1.338 H20 RFE 47
RFE H21 H21 H 0 1 N N N -1.960 -44.159 129.445 2.656 0.537 1.234 H21 RFE 48
RFE H22 H22 H 0 1 N N N -6.506 -46.497 130.143 2.249 -4.549 0.341 H22 RFE 49
RFE H23 H23 H 0 1 N N N -0.412 -46.217 127.076 -0.689 -1.307 1.403 H23 RFE 50
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RFE O01 P02 DOUB N N 1
RFE O27 P02 SING N N 2
RFE O22 C20 DOUB N N 3
RFE P02 N18 SING N N 4
RFE P02 C03 SING N N 5
RFE N18 C19 SING N N 6
RFE C20 C19 SING N N 7
RFE C20 O21 SING N N 8
RFE C03 O04 SING N N 9
RFE C19 C23 SING N N 10
RFE C23 C24 SING N N 11
RFE O04 C05 SING N N 12
RFE C26 S25 SING N N 13
RFE C24 S25 SING N N 14
RFE C05 C06 SING N N 15
RFE C05 C07 SING N N 16
RFE N14 C13 SING N N 17
RFE N12 C13 DOUB Y N 18
RFE N12 C11 SING Y N 19
RFE C13 C15 SING Y N 20
RFE C11 N10 DOUB Y N 21
RFE C15 C09 DOUB Y N 22
RFE C15 N16 SING Y N 23
RFE N10 C09 SING Y N 24
RFE C09 N08 SING Y N 25
RFE N16 C17 DOUB Y N 26
RFE N08 C17 SING Y N 27
RFE N08 C07 SING N N 28
RFE C03 H1 SING N N 29
RFE C03 H2 SING N N 30
RFE C05 H3 SING N N 31
RFE C06 H4 SING N N 32
RFE C06 H5 SING N N 33
RFE C06 H6 SING N N 34
RFE C07 H7 SING N N 35
RFE C07 H8 SING N N 36
RFE C11 H9 SING N N 37
RFE C17 H10 SING N N 38
RFE C19 H11 SING N N 39
RFE C23 H12 SING N N 40
RFE C23 H13 SING N N 41
RFE C24 H14 SING N N 42
RFE C24 H15 SING N N 43
RFE C26 H16 SING N N 44
RFE C26 H17 SING N N 45
RFE C26 H18 SING N N 46
RFE N14 H19 SING N N 47
RFE N14 H20 SING N N 48
RFE N18 H21 SING N N 49
RFE O21 H22 SING N N 50
RFE O27 H23 SING N N 51
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RFE InChI InChI 1.03 "InChI=1S/C14H23N6O5PS/c1-9(5-20-7-18-11-12(15)16-6-17-13(11)20)25-8-26(23,24)19-10(14(21)22)3-4-27-2/h6-7,9-10H,3-5,8H2,1-2H3,(H,21,22)(H2,15,16,17)(H2,19,23,24)/t9-,10+/m1/s1"
RFE InChIKey InChI 1.03 PEQPYHOXTFLJCT-ZJUUUORDSA-N
RFE SMILES_CANONICAL CACTVS 3.385 "CSCC[C@H](N[P](O)(=O)CO[C@H](C)Cn1cnc2c(N)ncnc12)C(O)=O"
RFE SMILES CACTVS 3.385 "CSCC[CH](N[P](O)(=O)CO[CH](C)Cn1cnc2c(N)ncnc12)C(O)=O"
RFE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](Cn1cnc2c1ncnc2N)OCP(=O)(N[C@@H](CCSC)C(=O)O)O"
RFE SMILES "OpenEye OEToolkits" 2.0.7 "CC(Cn1cnc2c1ncnc2N)OCP(=O)(NC(CCSC)C(=O)O)O"
#
_pdbx_chem_comp_identifier.comp_id RFE
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[[(2~{R})-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-oxidanyl-phosphoryl]amino]-4-methylsulfanyl-butanoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RFE "Create component" 2020-09-28 PDBE
RFE "Initial release" 2021-01-13 RCSB
RFE "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id RFE
_pdbx_chem_comp_synonyms.name "(2~{S})-2-[[[(2~{R})-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-oxidanyl-phosphoryl]amino]-4-methylsulfanyl-butanoic acid"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##