data_RFP
#
_chem_comp.id RFP
_chem_comp.name RIFAMPICIN
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C43 H58 N4 O12"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2001-03-16
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 822.940
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RFP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "not provided"
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 1I6V
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RFP C1 C1 C 0 1 Y N N 48.535 97.571 24.909 ? ? ? C1 RFP 1
RFP C2 C2 C 0 1 Y N N 48.385 96.576 25.931 ? ? ? C2 RFP 2
RFP C3 C3 C 0 1 Y N N 49.457 95.732 26.315 ? ? ? C3 RFP 3
RFP C4 C4 C 0 1 Y N N 50.740 95.963 25.789 ? ? ? C4 RFP 4
RFP C5 C5 C 0 1 Y N N 52.255 97.183 24.089 ? ? ? C5 RFP 5
RFP C6 C6 C 0 1 Y N N 52.329 98.184 23.066 ? ? ? C6 RFP 6
RFP C7 C7 C 0 1 Y N N 51.324 99.013 22.634 ? ? ? C7 RFP 7
RFP C8 C8 C 0 1 Y N N 50.010 98.822 23.251 ? ? ? C8 RFP 8
RFP C9 C9 C 0 1 Y N N 49.837 97.769 24.323 ? ? ? C9 RFP 9
RFP C10 C10 C 0 1 Y N N 50.953 96.931 24.770 ? ? ? C10 RFP 10
RFP C11 C11 C 0 1 N N N 53.514 96.552 24.129 ? ? ? C11 RFP 11
RFP C12 C12 C 0 1 N N S 54.396 97.190 23.105 ? ? ? C12 RFP 12
RFP C13 C13 C 0 1 N N N 55.661 97.778 23.665 ? ? ? C13 RFP 13
RFP C14 C14 C 0 1 N N N 51.493 100.052 21.561 ? ? ? C14 RFP 14
RFP C15 C15 C 0 1 N N N 46.186 97.136 26.970 ? ? ? C15 RFP 15
RFP C16 C16 C 0 1 N N N 44.950 96.432 27.462 ? ? ? C16 RFP 16
RFP C17 C17 C 0 1 N N N 44.290 95.430 26.775 ? ? ? C17 RFP 17
RFP C18 C18 C 0 1 N N N 44.591 94.823 25.453 ? ? ? C18 RFP 18
RFP C19 C19 C 0 1 N N N 43.975 93.708 25.000 ? ? ? C19 RFP 19
RFP C20 C20 C 0 1 N N S 44.608 92.418 24.492 ? ? ? C20 RFP 20
RFP C21 C21 C 0 1 N N S 45.584 92.657 23.331 ? ? ? C21 RFP 21
RFP C22 C22 C 0 1 N N R 46.563 91.517 22.975 ? ? ? C22 RFP 22
RFP C23 C23 C 0 1 N N R 47.602 91.868 21.900 ? ? ? C23 RFP 23
RFP C24 C24 C 0 1 N N R 49.044 92.222 22.338 ? ? ? C24 RFP 24
RFP C25 C25 C 0 1 N N S 49.802 92.855 21.145 ? ? ? C25 RFP 25
RFP C26 C26 C 0 1 N N R 50.807 93.988 21.507 ? ? ? C26 RFP 26
RFP C27 C27 C 0 1 N N S 51.788 94.290 20.347 ? ? ? C27 RFP 27
RFP C28 C28 C 0 1 N N N 52.908 95.313 20.658 ? ? ? C28 RFP 28
RFP C29 C29 C 0 1 N N N 53.811 95.149 21.637 ? ? ? C29 RFP 29
RFP C30 C30 C 0 1 N N N 44.502 96.928 28.818 ? ? ? C30 RFP 30
RFP C31 C31 C 0 1 N N N 45.276 91.766 25.727 ? ? ? C31 RFP 31
RFP C32 C32 C 0 1 N N N 45.824 90.223 22.532 ? ? ? C32 RFP 32
RFP C33 C33 C 0 1 N N N 49.817 91.008 22.892 ? ? ? C33 RFP 33
RFP C34 C34 C 0 1 N N N 49.995 95.193 21.899 ? ? ? C34 RFP 34
RFP C35 C35 C 0 1 N N N 49.896 91.280 19.314 ? ? ? C35 RFP 35
RFP C36 C36 C 0 1 N N N 50.711 90.240 18.695 ? ? ? C36 RFP 36
RFP C37 C37 C 0 1 N N N 51.509 94.202 17.934 ? ? ? C37 RFP 37
RFP C38 C38 C 0 1 N N N 46.437 89.991 30.793 ? ? ? C38 RFP 38
RFP C39 C39 C 0 1 N N N 48.361 91.198 29.811 ? ? ? C39 RFP 39
RFP C40 C40 C 0 1 N N N 48.909 92.576 29.465 ? ? ? C40 RFP 40
RFP C41 C41 C 0 1 N N N 46.669 93.510 29.331 ? ? ? C41 RFP 41
RFP C42 C42 C 0 1 N N N 46.063 92.158 29.654 ? ? ? C42 RFP 42
RFP C43 C43 C 0 1 N N N 49.289 94.561 27.183 ? ? ? C43 RFP 43
RFP N1 N1 N 0 1 N N N 47.096 96.286 26.473 ? ? ? N1 RFP 44
RFP N2 N2 N 0 1 N N N 48.294 94.494 28.016 ? ? ? N2 RFP 45
RFP N3 N3 N 0 1 N N N 47.948 93.290 28.636 ? ? ? N3 RFP 46
RFP N4 N4 N 0 1 N N N 47.003 91.327 30.489 ? ? ? N4 RFP 47
RFP O1 O1 O 0 1 N N N 47.471 98.266 24.488 ? ? ? O1 RFP 48
RFP O2 O2 O 0 1 N N N 49.006 99.538 22.893 ? ? ? O2 RFP 49
RFP O3 O3 O 0 1 N N N 53.573 98.238 22.501 ? ? ? O3 RFP 50
RFP O4 O4 O 0 1 N N N 53.974 95.598 24.821 ? ? ? O4 RFP 51
RFP O5 O5 O 0 1 N N N 54.773 96.192 22.056 ? ? ? O5 RFP 52
RFP O6 O6 O 0 1 N N N 50.986 94.738 19.186 ? ? ? O6 RFP 53
RFP O7 O7 O 0 1 N N N 50.469 91.795 20.428 ? ? ? O7 RFP 54
RFP O8 O8 O 0 1 N N N 48.856 91.664 18.913 ? ? ? O8 RFP 55
RFP O9 O9 O 0 1 N N N 47.161 92.980 21.083 ? ? ? O9 RFP 56
RFP O10 O10 O 0 1 N N N 44.756 92.982 22.212 ? ? ? O10 RFP 57
RFP O11 O11 O 0 1 N N N 46.290 98.343 27.047 ? ? ? O11 RFP 58
RFP O12 O12 O 0 1 N N N 51.732 95.163 26.318 ? ? ? O12 RFP 59
RFP H131 1H13 H 0 0 N N N 56.319 98.254 22.901 ? ? ? H131 RFP 60
RFP H132 2H13 H 0 0 N N N 55.428 98.498 24.483 ? ? ? H132 RFP 61
RFP H133 3H13 H 0 0 N N N 56.225 97.010 24.243 ? ? ? H133 RFP 62
RFP H141 1H14 H 0 0 N N N 50.676 100.725 21.210 ? ? ? H141 RFP 63
RFP H142 2H14 H 0 0 N N N 52.344 100.703 21.867 ? ? ? H142 RFP 64
RFP H143 3H14 H 0 0 N N N 51.896 99.530 20.661 ? ? ? H143 RFP 65
RFP H17C CH17 H 0 0 N N N 43.419 95.072 27.350 ? ? ? H17C RFP 66
RFP H18C CH18 H 0 0 N N N 45.333 95.234 24.749 ? ? ? H18C RFP 67
RFP H19C CH19 H 0 0 N N N 42.883 93.860 25.048 ? ? ? H19C RFP 68
RFP H20C CH20 H 0 0 N N N 43.843 91.736 24.052 ? ? ? H20C RFP 69
RFP H211 1H21 H 0 0 N N N 46.287 93.464 23.642 ? ? ? H211 RFP 70
RFP H22C CH22 H 0 0 N N N 47.111 91.346 23.930 ? ? ? H22C RFP 71
RFP H23C CH23 H 0 0 N N N 47.665 90.890 21.366 ? ? ? H23C RFP 72
RFP H24C CH24 H 0 0 N N N 48.972 92.954 23.175 ? ? ? H24C RFP 73
RFP H25C CH25 H 0 0 N N N 49.036 93.369 20.518 ? ? ? H25C RFP 74
RFP H26C CH26 H 0 0 N N N 51.456 93.672 22.356 ? ? ? H26C RFP 75
RFP H27C CH27 H 0 0 N N N 52.343 93.345 20.143 ? ? ? H27C RFP 76
RFP H28C CH28 H 0 0 N N N 53.081 96.262 20.123 ? ? ? H28C RFP 77
RFP H29C CH29 H 0 0 N N N 53.762 94.149 22.100 ? ? ? H29C RFP 78
RFP H301 1H30 H 0 0 N N N 43.586 96.406 29.182 ? ? ? H301 RFP 79
RFP H302 2H30 H 0 0 N N N 45.327 96.857 29.563 ? ? ? H302 RFP 80
RFP H303 3H30 H 0 0 N N N 44.358 98.033 28.813 ? ? ? H303 RFP 81
RFP H311 1H31 H 0 0 N N N 45.739 90.822 25.355 ? ? ? H311 RFP 82
RFP H312 2H31 H 0 0 N N N 45.992 92.438 26.254 ? ? ? H312 RFP 83
RFP H313 3H31 H 0 0 N N N 44.579 91.614 26.584 ? ? ? H313 RFP 84
RFP H321 1H32 H 0 0 N N N 46.530 89.399 22.275 ? ? ? H321 RFP 85
RFP H322 2H32 H 0 0 N N N 45.087 89.895 23.302 ? ? ? H322 RFP 86
RFP H323 3H32 H 0 0 N N N 45.121 90.428 21.690 ? ? ? H323 RFP 87
RFP H331 1H33 H 0 0 N N N 50.855 91.263 23.207 ? ? ? H331 RFP 88
RFP H332 2H33 H 0 0 N N N 49.255 90.523 23.724 ? ? ? H332 RFP 89
RFP H333 3H33 H 0 0 N N N 49.817 90.167 22.159 ? ? ? H333 RFP 90
RFP H341 1H34 H 0 0 N N N 50.714 96.004 22.158 ? ? ? H341 RFP 91
RFP H342 2H34 H 0 0 N N N 49.257 95.495 21.119 ? ? ? H342 RFP 92
RFP H343 3H34 H 0 0 N N N 49.263 94.981 22.713 ? ? ? H343 RFP 93
RFP H361 1H36 H 0 0 N N N 50.239 89.816 17.777 ? ? ? H361 RFP 94
RFP H362 2H36 H 0 0 N N N 51.740 90.611 18.481 ? ? ? H362 RFP 95
RFP H363 3H36 H 0 0 N N N 50.958 89.436 19.426 ? ? ? H363 RFP 96
RFP H371 1H37 H 0 0 N N N 50.905 94.539 17.059 ? ? ? H371 RFP 97
RFP H372 2H37 H 0 0 N N N 52.588 94.450 17.803 ? ? ? H372 RFP 98
RFP H373 3H37 H 0 0 N N N 51.589 93.090 17.968 ? ? ? H373 RFP 99
RFP H381 1H38 H 0 0 N N N 45.443 90.085 31.289 ? ? ? H381 RFP 100
RFP H382 2H38 H 0 0 N N N 46.384 89.348 29.883 ? ? ? H382 RFP 101
RFP H383 3H38 H 0 0 N N N 47.141 89.371 31.395 ? ? ? H383 RFP 102
RFP H391 1H39 H 0 0 N N N 48.319 90.530 28.919 ? ? ? H391 RFP 103
RFP H392 2H39 H 0 0 N N N 49.079 90.606 30.425 ? ? ? H392 RFP 104
RFP H401 1H40 H 0 0 N N N 49.193 93.156 30.373 ? ? ? H401 RFP 105
RFP H402 2H40 H 0 0 N N N 49.915 92.520 28.989 ? ? ? H402 RFP 106
RFP H411 1H41 H 0 0 N N N 45.974 94.164 28.754 ? ? ? H411 RFP 107
RFP H412 2H41 H 0 0 N N N 46.776 94.158 30.231 ? ? ? H412 RFP 108
RFP H421 1H42 H 0 0 N N N 45.064 92.261 30.139 ? ? ? H421 RFP 109
RFP H422 2H42 H 0 0 N N N 45.748 91.618 28.730 ? ? ? H422 RFP 110
RFP HC43 HC43 H 0 0 N N N 49.950 93.678 27.211 ? ? ? HC43 RFP 111
RFP HN1 HN1 H 0 1 N N N 46.774 95.318 26.511 ? ? ? HN1 RFP 112
RFP HO1 HO1 H 0 1 N N N 47.570 98.925 23.811 ? ? ? HO1 RFP 113
RFP HO2 HO2 H 0 1 N N N 48.153 99.414 23.293 ? ? ? HO2 RFP 114
RFP HO9 HO9 H 0 1 N N N 47.803 93.197 20.418 ? ? ? HO9 RFP 115
RFP H10O OH10 H 0 0 N N N 45.359 93.129 21.493 ? ? ? H10O RFP 116
RFP H12O OH12 H 0 0 N N N 52.599 95.319 25.962 ? ? ? H12O RFP 117
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RFP C1 C2 DOUB Y N 1
RFP C1 C9 SING Y N 2
RFP C1 O1 SING N N 3
RFP C2 C3 SING Y N 4
RFP C2 N1 SING N N 5
RFP C3 C4 DOUB Y N 6
RFP C3 C43 SING N N 7
RFP C4 C10 SING Y N 8
RFP C4 O12 SING N N 9
RFP C5 C6 DOUB Y N 10
RFP C5 C10 SING Y N 11
RFP C5 C11 SING N N 12
RFP C6 C7 SING Y N 13
RFP C6 O3 SING N N 14
RFP C7 C8 DOUB Y N 15
RFP C7 C14 SING N N 16
RFP C8 C9 SING Y N 17
RFP C8 O2 SING N N 18
RFP C9 C10 DOUB Y N 19
RFP C11 C12 SING N N 20
RFP C11 O4 DOUB N N 21
RFP C12 C13 SING N N 22
RFP C12 O3 SING N N 23
RFP C12 O5 SING N N 24
RFP C13 H131 SING N N 25
RFP C13 H132 SING N N 26
RFP C13 H133 SING N N 27
RFP C14 H141 SING N N 28
RFP C14 H142 SING N N 29
RFP C14 H143 SING N N 30
RFP C15 C16 SING N N 31
RFP C15 N1 SING N N 32
RFP C15 O11 DOUB N N 33
RFP C16 C17 DOUB N Z 34
RFP C16 C30 SING N N 35
RFP C17 C18 SING N N 36
RFP C17 H17C SING N N 37
RFP C18 C19 DOUB N E 38
RFP C18 H18C SING N N 39
RFP C19 C20 SING N N 40
RFP C19 H19C SING N N 41
RFP C20 C21 SING N N 42
RFP C20 C31 SING N N 43
RFP C20 H20C SING N N 44
RFP C21 C22 SING N N 45
RFP C21 O10 SING N N 46
RFP C21 H211 SING N N 47
RFP C22 C23 SING N N 48
RFP C22 C32 SING N N 49
RFP C22 H22C SING N N 50
RFP C23 C24 SING N N 51
RFP C23 O9 SING N N 52
RFP C23 H23C SING N N 53
RFP C24 C25 SING N N 54
RFP C24 C33 SING N N 55
RFP C24 H24C SING N N 56
RFP C25 C26 SING N N 57
RFP C25 O7 SING N N 58
RFP C25 H25C SING N N 59
RFP C26 C27 SING N N 60
RFP C26 C34 SING N N 61
RFP C26 H26C SING N N 62
RFP C27 C28 SING N N 63
RFP C27 O6 SING N N 64
RFP C27 H27C SING N N 65
RFP C28 C29 DOUB N E 66
RFP C28 H28C SING N N 67
RFP C29 O5 SING N N 68
RFP C29 H29C SING N N 69
RFP C30 H301 SING N N 70
RFP C30 H302 SING N N 71
RFP C30 H303 SING N N 72
RFP C31 H311 SING N N 73
RFP C31 H312 SING N N 74
RFP C31 H313 SING N N 75
RFP C32 H321 SING N N 76
RFP C32 H322 SING N N 77
RFP C32 H323 SING N N 78
RFP C33 H331 SING N N 79
RFP C33 H332 SING N N 80
RFP C33 H333 SING N N 81
RFP C34 H341 SING N N 82
RFP C34 H342 SING N N 83
RFP C34 H343 SING N N 84
RFP C35 C36 SING N N 85
RFP C35 O7 SING N N 86
RFP C35 O8 DOUB N N 87
RFP C36 H361 SING N N 88
RFP C36 H362 SING N N 89
RFP C36 H363 SING N N 90
RFP C37 O6 SING N N 91
RFP C37 H371 SING N N 92
RFP C37 H372 SING N N 93
RFP C37 H373 SING N N 94
RFP C38 N4 SING N N 95
RFP C38 H381 SING N N 96
RFP C38 H382 SING N N 97
RFP C38 H383 SING N N 98
RFP C39 C40 SING N N 99
RFP C39 N4 SING N N 100
RFP C39 H391 SING N N 101
RFP C39 H392 SING N N 102
RFP C40 N3 SING N N 103
RFP C40 H401 SING N N 104
RFP C40 H402 SING N N 105
RFP C41 C42 SING N N 106
RFP C41 N3 SING N N 107
RFP C41 H411 SING N N 108
RFP C41 H412 SING N N 109
RFP C42 N4 SING N N 110
RFP C42 H421 SING N N 111
RFP C42 H422 SING N N 112
RFP C43 N2 DOUB N E 113
RFP C43 HC43 SING N N 114
RFP N1 HN1 SING N N 115
RFP N2 N3 SING N N 116
RFP O1 HO1 SING N N 117
RFP O2 HO2 SING N N 118
RFP O9 HO9 SING N N 119
RFP O10 H10O SING N N 120
RFP O12 H12O SING N N 121
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RFP SMILES ACDLabs 10.04 "O=C4c5c2c(O)c(\C=N\N1CCN(C)CC1)c3c(O)c2c(O)c(c5OC4(OC=CC(OC)C(C(OC(=O)C)C(C)C(O)C(C)C(O)C(C=CC=C(C(=O)N3)C)C)C)C)C"
RFP SMILES_CANONICAL CACTVS 3.341 "CO[C@H]1\C=C\O[C@@]2(C)Oc3c(C)c(O)c4c(O)c(NC(=O)\C(=C/C=C/[C@H](C)[C@H](O)[C@@H](C)[C@@H](O)[C@@H](C)[C@H](OC(C)=O)[C@@H]1C)C)c(\C=N\N5CCN(C)CC5)c(O)c4c3C2=O"
RFP SMILES CACTVS 3.341 "CO[CH]1C=CO[C]2(C)Oc3c(C)c(O)c4c(O)c(NC(=O)C(=CC=C[CH](C)[CH](O)[CH](C)[CH](O)[CH](C)[CH](OC(C)=O)[CH]1C)C)c(C=NN5CCN(C)CC5)c(O)c4c3C2=O"
RFP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c2c3c4c1O[C@@](C4=O)(O\C=C\[C@@H]([C@H]([C@H]([C@@H]([C@@H]([C@@H]([C@H]([C@H](C=C\C=C(/C(=O)Nc(c2O)c(c3O)\C=N\N5CCN(CC5)C)\C)C)O)C)O)C)OC(=O)C)C)OC)C)O"
RFP SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c2c3c4c1OC(C4=O)(OC=CC(C(C(C(C(C(C(C(C=CC=C(C(=O)Nc(c2O)c(c3O)C=NN5CCN(CC5)C)C)C)O)C)O)C)OC(=O)C)C)OC)C)O"
RFP InChI InChI 1.03 "InChI=1S/C43H58N4O12/c1-21-12-11-13-22(2)42(55)45-33-28(20-44-47-17-15-46(9)16-18-47)37(52)30-31(38(33)53)36(51)26(6)40-32(30)41(54)43(8,59-40)57-19-14-29(56-10)23(3)39(58-27(7)48)25(5)35(50)24(4)34(21)49/h11-14,19-21,23-25,29,34-35,39,49-53H,15-18H2,1-10H3,(H,45,55)/b12-11+,19-14+,22-13-,44-20+/t21-,23+,24+,25+,29-,34-,35+,39+,43-/m0/s1"
RFP InChIKey InChI 1.03 JQXXHWHPUNPDRT-WLSIYKJHSA-N
#
_pdbx_chem_comp_identifier.comp_id RFP
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 10.04
_pdbx_chem_comp_identifier.identifier "(2S,12Z,14E,16S,17S,18R,19R,20R,21S,22R,23S,24E)-5,6,9,17,19-pentahydroxy-23-methoxy-2,4,12,16,18,20,22-heptamethyl-8-{(E)-[(4-methylpiperazin-1-yl)imino]methyl}-1,11-dioxo-1,2-dihydro-2,7-(epoxypentadeca[1,11,13]trienoimino)naphtho[2,1-b]furan-21-yl acetate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RFP "Create component" 2001-03-16 RCSB
RFP "Modify descriptor" 2011-06-04 RCSB
##