data_RFV # _chem_comp.id RFV _chem_comp.name "rifamycin SV" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H49 N O12" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-01-30 _chem_comp.pdbx_modified_date 2014-05-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 699.784 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RFV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4OIR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RFV C1 C1 C 0 1 Y N N 11.626 -12.085 75.366 4.847 0.919 0.228 C1 RFV 1 RFV C2 C2 C 0 1 Y N N 10.989 -10.997 75.999 4.549 -0.250 -0.414 C2 RFV 2 RFV C3 C3 C 0 1 Y N N 10.655 -9.845 75.284 3.426 -0.295 -1.287 C3 RFV 3 RFV C4 C4 C 0 1 Y N N 10.962 -9.756 73.901 2.557 0.743 -1.370 C4 RFV 4 RFV C5 C5 C 0 1 Y N N 11.976 -10.815 71.829 1.741 2.875 -0.465 C5 RFV 5 RFV C6 C6 C 0 1 Y N N 12.576 -11.891 71.181 1.953 3.999 0.283 C6 RFV 6 RFV C7 C7 C 0 1 Y N N 12.914 -13.080 71.932 3.191 4.157 0.928 C7 RFV 7 RFV C8 C8 C 0 1 Y N N 12.605 -13.142 73.289 4.167 3.207 0.880 C8 RFV 8 RFV C9 C9 C 0 1 Y N N 11.943 -12.013 73.955 3.937 2.002 0.188 C9 RFV 9 RFV C10 C10 C 0 1 Y N N 11.616 -10.883 73.239 2.729 1.881 -0.554 C10 RFV 10 RFV C11 C11 C 0 1 N N R 11.655 -9.853 70.767 0.349 2.993 -1.060 C11 RFV 11 RFV C12 C12 C 0 1 N N S 12.284 -10.198 69.568 -0.252 4.240 -0.365 C12 RFV 12 RFV C13 C13 C 0 1 N N N 11.284 -10.298 68.482 -0.796 5.210 -1.411 C13 RFV 13 RFV C14 C14 C 0 1 N N N 13.594 -14.228 71.231 3.456 5.425 1.699 C14 RFV 14 RFV C15 C15 C 0 1 N N N 11.572 -11.482 78.468 4.429 -2.526 -0.361 C15 RFV 15 RFV C16 C16 C 0 1 N N N 11.117 -11.470 79.930 4.538 -3.845 -0.898 C16 RFV 16 RFV C17 C17 C 0 1 N N N 12.238 -11.521 80.983 3.542 -4.760 -0.762 C17 RFV 17 RFV C18 C18 C 0 1 N N N 13.527 -10.719 80.762 2.396 -4.567 0.113 C18 RFV 18 RFV C19 C19 C 0 1 N N N 13.493 -9.321 80.790 1.295 -5.311 -0.027 C19 RFV 19 RFV C20 C20 C 0 1 N N S 14.774 -8.506 80.654 0.134 -5.120 0.922 C20 RFV 20 RFV C21 C21 C 0 1 N N S 15.468 -8.754 79.292 -0.948 -4.281 0.250 C21 RFV 21 RFV C22 C22 C 0 1 N N R 16.470 -7.648 78.856 -2.046 -3.855 1.224 C22 RFV 22 RFV C23 C23 C 0 1 N N R 16.961 -7.815 77.388 -3.054 -2.959 0.516 C23 RFV 23 RFV C24 C24 C 0 1 N N R 15.866 -7.953 76.296 -3.096 -1.525 1.009 C24 RFV 24 RFV C25 C25 C 0 1 N N S 16.372 -8.030 74.830 -4.367 -0.828 0.484 C25 RFV 25 RFV C26 C26 C 0 1 N N R 15.263 -8.327 73.789 -4.572 0.479 1.244 C26 RFV 26 RFV C27 C27 C 0 1 N N S 15.705 -8.392 72.322 -4.268 1.706 0.393 C27 RFV 27 RFV C28 C28 C 0 1 N N N 14.505 -8.411 71.344 -3.040 2.408 0.918 C28 RFV 28 RFV C29 C29 C 0 1 N N N 14.491 -9.149 70.142 -2.376 3.233 0.128 C29 RFV 29 RFV C30 C30 C 0 1 N N N 10.152 -12.588 80.229 5.778 -4.272 -1.656 C30 RFV 30 RFV C31 C31 C 0 1 N N N 14.393 -7.073 80.907 -0.427 -6.497 1.286 C31 RFV 31 RFV C32 C32 C 0 1 N N N 17.655 -7.572 79.804 -1.469 -3.221 2.480 C32 RFV 32 RFV C33 C33 C 0 1 N N N 14.952 -6.769 76.354 -1.893 -0.741 0.477 C33 RFV 33 RFV C34 C34 C 0 1 N N N 14.654 -9.654 74.112 -6.028 0.553 1.729 C34 RFV 34 RFV C35 C35 C 0 1 N N N 18.402 -6.879 74.343 -5.360 -0.604 -1.667 C35 RFV 35 RFV C36 C36 C 0 1 N N N 19.143 -5.580 74.437 -5.298 -0.379 -3.155 C36 RFV 36 RFV C37 C37 C 0 1 N N N 17.871 -9.308 71.814 -5.564 3.404 -0.704 C37 RFV 37 RFV N1 N1 N 0 1 N N N 10.639 -11.030 77.429 5.247 -1.467 -0.358 N1 RFV 38 RFV O1 O1 O 0 1 N N N 11.955 -13.223 76.075 5.997 1.013 0.948 O1 RFV 39 RFV O2 O2 O 0 1 N N N 12.923 -14.264 74.013 5.356 3.440 1.496 O2 RFV 40 RFV O3 O3 O 0 1 N N N 12.771 -11.581 69.822 0.872 4.831 0.306 O3 RFV 41 RFV O4 O4 O 0 1 N N N 11.185 -8.564 71.033 -0.413 1.823 -0.767 O4 RFV 42 RFV O5 O5 O 0 1 N N N 13.309 -9.262 69.335 -1.258 3.859 0.565 O5 RFV 43 RFV O6 O6 O 0 1 N N N 16.529 -9.485 72.145 -5.378 2.611 0.470 O6 RFV 44 RFV O7 O7 O 0 1 N N N 17.039 -6.879 74.513 -4.232 -0.605 -0.940 O7 RFV 45 RFV O8 O8 O 0 1 N N N 19.025 -7.918 74.485 -6.426 -0.785 -1.127 O8 RFV 46 RFV O9 O9 O 0 1 N N N 17.842 -8.866 77.313 -4.355 -3.552 0.643 O9 RFV 47 RFV O10 O10 O 0 1 N N N 16.099 -9.985 79.307 -0.351 -3.133 -0.356 O10 RFV 48 RFV O11 O11 O 0 1 N N N 12.692 -11.865 78.168 3.386 -2.295 0.234 O11 RFV 49 RFV O12 O12 O 0 1 N N N 10.625 -8.609 73.213 1.535 0.686 -2.264 O12 RFV 50 RFV H1 H1 H 0 1 N N N 10.164 -9.023 75.783 3.241 -1.187 -1.868 H1 RFV 51 RFV H2 H2 H 0 1 N N N 10.676 -10.286 70.515 0.410 3.146 -2.138 H2 RFV 52 RFV H3 H3 H 0 1 N N N 10.526 -11.049 68.749 -0.010 5.454 -2.126 H3 RFV 53 RFV H4 H4 H 0 1 N N N 10.798 -9.321 68.340 -1.633 4.748 -1.936 H4 RFV 54 RFV H5 H5 H 0 1 N N N 11.784 -10.598 67.549 -1.136 6.122 -0.920 H5 RFV 55 RFV H6 H6 H 0 1 N N N 14.685 -14.100 71.290 3.134 5.296 2.732 H6 RFV 56 RFV H7 H7 H 0 1 N N N 13.310 -15.174 71.716 4.523 5.648 1.676 H7 RFV 57 RFV H8 H8 H 0 1 N N N 13.284 -14.249 70.176 2.903 6.248 1.245 H8 RFV 58 RFV H10 H10 H 0 1 N N N 12.118 -12.119 81.874 3.639 -5.703 -1.293 H10 RFV 59 RFV H12 H12 H 0 1 N N N 14.460 -11.233 80.585 2.415 -3.840 0.910 H12 RFV 60 RFV H13 H13 H 0 1 N N N 12.548 -8.813 80.909 1.236 -6.054 -0.809 H13 RFV 61 RFV H14 H14 H 0 1 N N N 15.467 -8.825 81.447 0.513 -4.634 1.817 H14 RFV 62 RFV H15 H15 H 0 1 N N N 14.673 -8.774 78.532 -1.410 -4.883 -0.547 H15 RFV 63 RFV H16 H16 H 0 1 N N N 15.937 -6.687 78.912 -2.591 -4.772 1.535 H16 RFV 64 RFV H17 H17 H 0 1 N N N 17.510 -6.893 77.148 -2.811 -2.951 -0.561 H17 RFV 65 RFV H18 H18 H 0 1 N N N 15.284 -8.863 76.506 -3.135 -1.469 2.095 H18 RFV 66 RFV H19 H19 H 0 1 N N N 17.077 -8.873 74.786 -5.225 -1.478 0.664 H19 RFV 67 RFV H20 H20 H 0 1 N N N 14.490 -7.550 73.883 -3.920 0.485 2.125 H20 RFV 68 RFV H21 H21 H 0 1 N N N 16.274 -7.474 72.114 -4.107 1.445 -0.649 H21 RFV 69 RFV H22 H22 H 0 1 N N N 13.632 -7.828 71.596 -2.707 2.243 1.933 H22 RFV 70 RFV H23 H23 H 0 1 N N N 15.395 -9.643 69.819 -2.735 3.385 -0.877 H23 RFV 71 RFV H24 H24 H 0 1 N N N 9.852 -12.541 81.286 6.501 -4.697 -0.960 H24 RFV 72 RFV H25 H25 H 0 1 N N N 9.262 -12.484 79.591 5.508 -5.020 -2.401 H25 RFV 73 RFV H26 H26 H 0 1 N N N 10.637 -13.555 80.028 6.217 -3.406 -2.152 H26 RFV 74 RFV H27 H27 H 0 1 N N N 13.909 -6.990 81.891 0.351 -7.091 1.765 H27 RFV 75 RFV H28 H28 H 0 1 N N N 15.296 -6.445 80.888 -1.266 -6.378 1.971 H28 RFV 76 RFV H29 H29 H 0 1 N N N 13.696 -6.736 80.126 -0.765 -7.002 0.381 H29 RFV 77 RFV H30 H30 H 0 1 N N N 17.293 -7.454 80.836 -0.891 -2.338 2.208 H30 RFV 78 RFV H31 H31 H 0 1 N N N 18.246 -8.496 79.726 -2.282 -2.932 3.146 H31 RFV 79 RFV H32 H32 H 0 1 N N N 18.284 -6.710 79.536 -0.823 -3.938 2.985 H32 RFV 80 RFV H33 H33 H 0 1 N N N 14.557 -6.659 77.375 -1.911 -0.742 -0.613 H33 RFV 81 RFV H34 H34 H 0 1 N N N 15.509 -5.862 76.077 -1.938 0.286 0.840 H34 RFV 82 RFV H35 H35 H 0 1 N N N 14.118 -6.915 75.652 -0.972 -1.209 0.825 H35 RFV 83 RFV H36 H36 H 0 1 N N N 14.319 -9.659 75.160 -6.234 -0.292 2.387 H36 RFV 84 RFV H37 H37 H 0 1 N N N 13.793 -9.833 73.451 -6.183 1.484 2.274 H37 RFV 85 RFV H38 H38 H 0 1 N N N 15.402 -10.447 73.963 -6.699 0.518 0.871 H38 RFV 86 RFV H39 H39 H 0 1 N N N 20.207 -5.778 74.633 -6.305 -0.412 -3.571 H39 RFV 87 RFV H40 H40 H 0 1 N N N 19.041 -5.030 73.490 -4.854 0.597 -3.357 H40 RFV 88 RFV H41 H41 H 0 1 N N N 18.725 -4.978 75.257 -4.688 -1.157 -3.615 H41 RFV 89 RFV H42 H42 H 0 1 N N N 18.358 -10.290 71.717 -4.671 4.004 -0.882 H42 RFV 90 RFV H43 H43 H 0 1 N N N 17.945 -8.766 70.860 -5.740 2.752 -1.559 H43 RFV 91 RFV H44 H44 H 0 1 N N N 18.370 -8.728 72.604 -6.422 4.062 -0.566 H44 RFV 92 RFV H45 H45 H 0 1 N N N 9.725 -10.731 77.704 6.210 -1.529 -0.312 H45 RFV 93 RFV H46 H46 H 0 1 N N N 12.274 -12.979 76.936 6.756 1.327 0.438 H46 RFV 94 RFV H47 H47 H 0 1 N N N 12.648 -14.148 74.915 5.386 3.148 2.417 H47 RFV 95 RFV H48 H48 H 0 1 N N N 10.793 -8.542 71.898 -0.447 1.602 0.174 H48 RFV 96 RFV H49 H49 H 0 1 N N N 18.507 -8.771 77.985 -4.424 -4.436 0.257 H49 RFV 97 RFV H50 H50 H 0 1 N N N 15.481 -10.655 79.574 0.308 -3.343 -1.031 H50 RFV 98 RFV H51 H51 H 0 1 N N N 10.212 -7.993 73.807 0.756 0.213 -1.941 H51 RFV 99 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RFV C13 C12 SING N N 1 RFV O5 C12 SING N N 2 RFV O5 C29 SING N N 3 RFV C12 O3 SING N N 4 RFV C12 C11 SING N N 5 RFV O3 C6 SING N N 6 RFV C29 C28 DOUB N E 7 RFV C11 O4 SING N N 8 RFV C11 C5 SING N N 9 RFV C6 C5 DOUB Y N 10 RFV C6 C7 SING Y N 11 RFV C14 C7 SING N N 12 RFV C28 C27 SING N N 13 RFV C37 O6 SING N N 14 RFV C5 C10 SING Y N 15 RFV C7 C8 DOUB Y N 16 RFV O6 C27 SING N N 17 RFV C27 C26 SING N N 18 RFV O12 C4 SING N N 19 RFV C10 C4 DOUB Y N 20 RFV C10 C9 SING Y N 21 RFV C8 C9 SING Y N 22 RFV C8 O2 SING N N 23 RFV C26 C34 SING N N 24 RFV C26 C25 SING N N 25 RFV C4 C3 SING Y N 26 RFV C9 C1 DOUB Y N 27 RFV C35 C36 SING N N 28 RFV C35 O8 DOUB N N 29 RFV C35 O7 SING N N 30 RFV O7 C25 SING N N 31 RFV C25 C24 SING N N 32 RFV C3 C2 DOUB Y N 33 RFV C1 C2 SING Y N 34 RFV C1 O1 SING N N 35 RFV C2 N1 SING N N 36 RFV C24 C33 SING N N 37 RFV C24 C23 SING N N 38 RFV O9 C23 SING N N 39 RFV C23 C22 SING N N 40 RFV N1 C15 SING N N 41 RFV O11 C15 DOUB N N 42 RFV C15 C16 SING N N 43 RFV C22 C21 SING N N 44 RFV C22 C32 SING N N 45 RFV C21 O10 SING N N 46 RFV C21 C20 SING N N 47 RFV C16 C30 SING N N 48 RFV C16 C17 DOUB N Z 49 RFV C20 C19 SING N N 50 RFV C20 C31 SING N N 51 RFV C18 C19 DOUB N E 52 RFV C18 C17 SING N N 53 RFV C3 H1 SING N N 54 RFV C11 H2 SING N N 55 RFV C13 H3 SING N N 56 RFV C13 H4 SING N N 57 RFV C13 H5 SING N N 58 RFV C14 H6 SING N N 59 RFV C14 H7 SING N N 60 RFV C14 H8 SING N N 61 RFV C17 H10 SING N N 62 RFV C18 H12 SING N N 63 RFV C19 H13 SING N N 64 RFV C20 H14 SING N N 65 RFV C21 H15 SING N N 66 RFV C22 H16 SING N N 67 RFV C23 H17 SING N N 68 RFV C24 H18 SING N N 69 RFV C25 H19 SING N N 70 RFV C26 H20 SING N N 71 RFV C27 H21 SING N N 72 RFV C28 H22 SING N N 73 RFV C29 H23 SING N N 74 RFV C30 H24 SING N N 75 RFV C30 H25 SING N N 76 RFV C30 H26 SING N N 77 RFV C31 H27 SING N N 78 RFV C31 H28 SING N N 79 RFV C31 H29 SING N N 80 RFV C32 H30 SING N N 81 RFV C32 H31 SING N N 82 RFV C32 H32 SING N N 83 RFV C33 H33 SING N N 84 RFV C33 H34 SING N N 85 RFV C33 H35 SING N N 86 RFV C34 H36 SING N N 87 RFV C34 H37 SING N N 88 RFV C34 H38 SING N N 89 RFV C36 H39 SING N N 90 RFV C36 H40 SING N N 91 RFV C36 H41 SING N N 92 RFV C37 H42 SING N N 93 RFV C37 H43 SING N N 94 RFV C37 H44 SING N N 95 RFV N1 H45 SING N N 96 RFV O1 H46 SING N N 97 RFV O2 H47 SING N N 98 RFV O4 H48 SING N N 99 RFV O9 H49 SING N N 100 RFV O10 H50 SING N N 101 RFV O12 H51 SING N N 102 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RFV SMILES ACDLabs 12.01 "O=C(OC4C(C)C(OC)C=COC3(Oc2c(c(O)c1c(O)c(cc(O)c1c2C3O)NC(=O)C(=CC=CC(C)C(O)C(C)C(O)C4C)C)C)C)C" RFV InChI InChI 1.03 ;InChI=1S/C37H49NO12/c1-16-11-10-12-17(2)36(46)38-23-15-24(40)26-27(32(23)44)31(43)21(6)34-28(26)35(45)37(8,50-34)48-14-13-25(47-9)18(3)33(49-22(7)39)20(5)30(42)19(4)29(16)41/h10-16,18-20,25,29-30,33,35,40-45H,1-9H3,(H,38,46)/b11-10+,14-13+,17-12-/t16-,18+,19+,20+,25-,29-,30+,33+,35+,37-/m0/s1 ; RFV InChIKey InChI 1.03 OUOULRWGQDSKTQ-ZVFQNIRDSA-N RFV SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1/C=C/O[C@@]2(C)Oc3c(C)c(O)c4c(O)c(NC(=O)\C(=C/C=C/[C@H](C)[C@H](O)[C@@H](C)[C@@H](O)[C@@H](C)[C@H](OC(C)=O)[C@@H]1C)C)cc(O)c4c3[C@H]2O" RFV SMILES CACTVS 3.385 "CO[CH]1C=CO[C]2(C)Oc3c(C)c(O)c4c(O)c(NC(=O)C(=CC=C[CH](C)[CH](O)[CH](C)[CH](O)[CH](C)[CH](OC(C)=O)[CH]1C)C)cc(O)c4c3[CH]2O" RFV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1c(c2c3c(cc(c2O)NC(=O)C(=C/C=C/[C@@H]([C@@H]([C@H]([C@H]([C@H]([C@@H]([C@@H]([C@H](/C=C/O[C@@]4([C@@H](c3c1O4)O)C)OC)C)OC(=O)C)C)O)C)O)C)C)O)O" RFV SMILES "OpenEye OEToolkits" 1.7.6 "Cc1c(c2c3c(cc(c2O)NC(=O)C(=CC=CC(C(C(C(C(C(C(C(C=COC4(C(c3c1O4)O)C)OC)C)OC(=O)C)C)O)C)O)C)C)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RFV "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,12Z,14E,16S,17S,18R,19R,20R,21S,22R,23S,24E)-1,5,6,9,17,19-hexahydroxy-23-methoxy-2,4,12,16,18,20,22-heptamethyl-11-oxo-1,2-dihydro-2,7-(epoxypentadeca[1,11,13]trienoimino)naphtho[2,1-b]furan-21-yl acetate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RFV "Create component" 2014-01-30 RCSB RFV "Initial release" 2014-05-07 RCSB #