data_RFZ # _chem_comp.id RFZ _chem_comp.name 5,6-dichloro-1-beta-D-ribofuranosyl-1H-benzimidazole _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H12 Cl2 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-10-19 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 319.141 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RFZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2RKP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RFZ C6 C6 C 0 1 Y N N 17.379 -3.247 16.889 0.744 -0.526 0.021 C6 RFZ 1 RFZ C5 C5 C 0 1 Y N N 16.515 -4.287 16.726 1.450 0.615 0.378 C5 RFZ 2 RFZ C4 C4 C 0 1 Y N N 15.945 -4.844 17.834 2.829 0.612 0.329 C4 RFZ 3 RFZ CL2 CL2 CL 0 0 N N N 14.832 -6.121 17.508 3.710 2.039 0.776 CL2 RFZ 4 RFZ C3 C3 C 0 1 Y N N 16.236 -4.349 19.127 3.516 -0.525 -0.077 C3 RFZ 5 RFZ CL1 CL1 CL 0 0 N N N 15.493 -5.093 20.456 5.251 -0.509 -0.133 CL1 RFZ 6 RFZ C2 C2 C 0 1 Y N N 17.122 -3.346 19.334 2.831 -1.665 -0.434 C2 RFZ 7 RFZ C7 C7 C 0 1 Y N N 17.667 -2.773 18.162 1.435 -1.678 -0.389 C7 RFZ 8 RFZ N2 N2 N 0 1 Y N N 18.543 -1.809 17.967 0.499 -2.621 -0.672 N2 RFZ 9 RFZ C1 C1 C 0 1 Y N N 18.782 -1.665 16.642 -0.690 -2.133 -0.467 C1 RFZ 10 RFZ N1 N1 N 0 1 Y N N 18.056 -2.551 15.980 -0.599 -0.843 -0.043 N1 RFZ 11 RFZ "C1'" "C1'" C 0 1 N N R 18.062 -2.710 14.534 -1.717 0.042 0.291 "C1'" RFZ 12 RFZ "O4'" "O4'" O 0 1 N N N 19.468 -2.611 14.227 -2.892 -0.733 0.614 "O4'" RFZ 13 RFZ "C4'" "C4'" C 0 1 N N R 19.586 -2.052 12.882 -4.004 0.171 0.436 "C4'" RFZ 14 RFZ "C5'" "C5'" C 0 1 N N N 20.673 -0.949 12.947 -5.303 -0.614 0.243 "C5'" RFZ 15 RFZ "O5'" "O5'" O 0 1 N N N 21.534 -1.194 14.077 -5.622 -1.311 1.449 "O5'" RFZ 16 RFZ "C3'" "C3'" C 0 1 N N S 18.165 -1.638 12.489 -3.664 0.970 -0.842 "C3'" RFZ 17 RFZ "O3'" "O3'" O 0 1 N N N 17.494 -2.718 11.772 -4.081 2.330 -0.708 "O3'" RFZ 18 RFZ "C2'" "C2'" C 0 1 N N R 17.519 -1.473 13.866 -2.122 0.885 -0.938 "C2'" RFZ 19 RFZ "O2'" "O2'" O 0 1 N N N 16.103 -1.594 13.772 -1.544 2.190 -0.868 "O2'" RFZ 20 RFZ H5 H5 H 0 1 N N N 16.286 -4.663 15.740 0.921 1.502 0.694 H5 RFZ 21 RFZ H2 H2 H 0 1 N N N 17.393 -3.008 20.323 3.372 -2.546 -0.748 H2 RFZ 22 RFZ H1 H1 H 0 1 N N N 19.454 -0.945 16.199 -1.614 -2.671 -0.615 H1 RFZ 23 RFZ "H1'" "H1'" H 0 1 N N N 17.511 -3.612 14.229 -1.450 0.692 1.125 "H1'" RFZ 24 RFZ "H4'" "H4'" H 0 1 N N N 19.933 -2.728 12.086 -4.090 0.840 1.292 "H4'" RFZ 25 RFZ "H5'" "H5'" H 0 1 N N N 21.268 -0.964 12.022 -6.111 0.075 -0.003 "H5'" RFZ 26 RFZ "H5'A" "H5'A" H 0 0 N N N 20.193 0.035 13.056 -5.177 -1.331 -0.568 "H5'A" RFZ 27 RFZ "HO5'" "HO5'" H 0 0 N N N 22.436 -1.248 13.783 -6.436 -1.831 1.399 "HO5'" RFZ 28 RFZ "H3'" "H3'" H 0 1 N N N 18.120 -0.753 11.837 -4.128 0.510 -1.714 "H3'" RFZ 29 RFZ "HO3'" "HO3'" H 0 0 N N N 17.348 -2.457 10.870 -5.034 2.438 -0.583 "HO3'" RFZ 30 RFZ "H2'" "H2'" H 0 1 N N N 17.720 -0.512 14.362 -1.824 0.383 -1.859 "H2'" RFZ 31 RFZ "HO2'" "HO2'" H 0 0 N N N 15.728 -1.621 14.645 -1.815 2.779 -1.586 "HO2'" RFZ 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RFZ "O3'" "C3'" SING N N 1 RFZ "C3'" "C4'" SING N N 2 RFZ "C3'" "C2'" SING N N 3 RFZ "C4'" "C5'" SING N N 4 RFZ "C4'" "O4'" SING N N 5 RFZ "C5'" "O5'" SING N N 6 RFZ "O2'" "C2'" SING N N 7 RFZ "C2'" "C1'" SING N N 8 RFZ "O4'" "C1'" SING N N 9 RFZ "C1'" N1 SING N N 10 RFZ N1 C1 SING Y N 11 RFZ N1 C6 SING Y N 12 RFZ C1 N2 DOUB Y N 13 RFZ C5 C6 DOUB Y N 14 RFZ C5 C4 SING Y N 15 RFZ C6 C7 SING Y N 16 RFZ CL2 C4 SING N N 17 RFZ C4 C3 DOUB Y N 18 RFZ N2 C7 SING Y N 19 RFZ C7 C2 DOUB Y N 20 RFZ C3 C2 SING Y N 21 RFZ C3 CL1 SING N N 22 RFZ C5 H5 SING N N 23 RFZ C2 H2 SING N N 24 RFZ C1 H1 SING N N 25 RFZ "C1'" "H1'" SING N N 26 RFZ "C4'" "H4'" SING N N 27 RFZ "C5'" "H5'" SING N N 28 RFZ "C5'" "H5'A" SING N N 29 RFZ "O5'" "HO5'" SING N N 30 RFZ "C3'" "H3'" SING N N 31 RFZ "O3'" "HO3'" SING N N 32 RFZ "C2'" "H2'" SING N N 33 RFZ "O2'" "HO2'" SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RFZ SMILES ACDLabs 10.04 "Clc2cc1ncn(c1cc2Cl)C3OC(C(O)C3O)CO" RFZ SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3cc(Cl)c(Cl)cc23" RFZ SMILES CACTVS 3.341 "OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3cc(Cl)c(Cl)cc23" RFZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c2c(cc(c1Cl)Cl)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O" RFZ SMILES "OpenEye OEToolkits" 1.5.0 "c1c2c(cc(c1Cl)Cl)n(cn2)C3C(C(C(O3)CO)O)O" RFZ InChI InChI 1.03 "InChI=1S/C12H12Cl2N2O4/c13-5-1-7-8(2-6(5)14)16(4-15-7)12-11(19)10(18)9(3-17)20-12/h1-2,4,9-12,17-19H,3H2/t9-,10-,11-,12-/m1/s1" RFZ InChIKey InChI 1.03 XHSQDZXAVJRBMX-DDHJBXDOSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RFZ "SYSTEMATIC NAME" ACDLabs 10.04 5,6-dichloro-1-beta-D-ribofuranosyl-1H-benzimidazole RFZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5R)-2-(5,6-dichlorobenzimidazol-1-yl)-5-(hydroxymethyl)oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RFZ "Create component" 2007-10-19 PDBJ RFZ "Modify aromatic_flag" 2011-06-04 RCSB RFZ "Modify descriptor" 2011-06-04 RCSB #