data_RGP # _chem_comp.id RGP _chem_comp.name "GAMMA-GLUTAMYL PHOSPHATE" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H10 N O7 P" _chem_comp.mon_nstd_parent_comp_id GLU _chem_comp.pdbx_synonyms "5-OXO-5-(PHOSPHONOOXY)-D-NORVALINE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-07-20 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 227.109 _chem_comp.one_letter_code E _chem_comp.three_letter_code RGP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RGP PA PA P 0 1 N N N N N N 7.734 -39.864 55.970 3.229 -0.059 0.014 PA RGP 1 RGP OA1 OA1 O 0 1 N N N N N N 7.253 -41.141 55.303 3.249 -1.503 0.337 OA1 RGP 2 RGP OA2 OA2 O 0 1 N N N N N N 6.520 -39.100 56.497 3.359 0.137 -1.579 OA2 RGP 3 RGP OA3 OA3 O 0 1 N N N N N N 8.570 -39.044 55.002 4.462 0.672 0.747 OA3 RGP 4 RGP OE2 OE2 O 0 1 N N N N N N 8.705 -40.392 57.214 1.844 0.586 0.523 OE2 RGP 5 RGP CD CD C 0 1 N N N N N N 9.301 -39.550 58.120 0.674 0.064 0.122 CD RGP 6 RGP OE1 OE1 O 0 1 N N N N N N 10.306 -38.857 57.958 0.660 -0.888 -0.621 OE1 RGP 7 RGP CG CG C 0 1 N N N N N N 8.592 -39.529 59.487 -0.622 0.668 0.598 CG RGP 8 RGP CB CB C 0 1 N N N N N N 8.315 -38.113 60.016 -1.797 -0.108 -0.002 CB RGP 9 RGP CA CA C 0 1 N N R Y N N 6.939 -37.801 60.612 -3.113 0.504 0.482 CA RGP 10 RGP C C C 0 1 N N N Y N Y 5.773 -37.972 59.619 -4.266 -0.333 -0.009 C RGP 11 RGP OXT OXT O 0 1 N N N Y N Y 4.864 -39.026 60.016 -4.895 0.015 -0.980 OXT RGP 12 RGP O O O 0 1 N N N Y N Y 5.688 -37.239 58.607 -4.595 -1.464 0.634 O RGP 13 RGP N N N 0 1 N N N Y Y N 6.979 -36.413 61.118 -3.240 1.870 -0.044 N RGP 14 RGP HA2 HA2 H 0 1 N N N N N N 6.625 -38.941 57.428 3.341 1.089 -1.746 HA2 RGP 15 RGP HA3 HA3 H 0 1 N N N N N N 8.067 -38.873 54.215 5.270 0.258 0.414 HA3 RGP 16 RGP HG1 HG1 H 0 1 N N N N N N 9.263 -40.019 60.208 -0.676 1.709 0.282 HG1 RGP 17 RGP HG2 HG2 H 0 1 N N N N N N 7.628 -40.049 59.380 -0.670 0.615 1.686 HG2 RGP 18 RGP HB1 HB1 H 0 1 N N N N N N 8.374 -37.474 59.123 -1.743 -1.150 0.314 HB1 RGP 19 RGP HB2 HB2 H 0 1 N N N N N N 9.049 -37.930 60.815 -1.749 -0.055 -1.090 HB2 RGP 20 RGP HA HA H 0 1 N N N Y N N 6.743 -38.527 61.415 -3.122 0.532 1.571 HA RGP 21 RGP HXT HO H 0 1 N N N Y N Y 4.914 -37.474 58.109 -5.336 -2.001 0.319 HO RGP 22 RGP H HN1 H 0 1 N N N Y Y N 7.804 -35.959 60.782 -2.400 2.362 0.221 HN1 RGP 23 RGP H2 HN2 H 0 1 N Y N Y Y N 6.988 -36.422 62.118 -3.227 1.795 -1.050 HN2 RGP 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RGP PA OA1 DOUB N N 1 RGP PA OA2 SING N N 2 RGP PA OA3 SING N N 3 RGP PA OE2 SING N N 4 RGP OA2 HA2 SING N N 5 RGP OA3 HA3 SING N N 6 RGP OE2 CD SING N N 7 RGP CD OE1 DOUB N N 8 RGP CD CG SING N N 9 RGP CG CB SING N N 10 RGP CG HG1 SING N N 11 RGP CG HG2 SING N N 12 RGP CB CA SING N N 13 RGP CB HB1 SING N N 14 RGP CB HB2 SING N N 15 RGP CA C SING N N 16 RGP CA N SING N N 17 RGP CA HA SING N N 18 RGP C OXT DOUB N N 19 RGP C O SING N N 20 RGP O HXT SING N N 21 RGP N H SING N N 22 RGP N H2 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RGP SMILES ACDLabs 10.04 "O=C(OP(=O)(O)O)CCC(C(=O)O)N" RGP SMILES_CANONICAL CACTVS 3.341 "N[C@H](CCC(=O)O[P](O)(O)=O)C(O)=O" RGP SMILES CACTVS 3.341 "N[CH](CCC(=O)O[P](O)(O)=O)C(O)=O" RGP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CC(=O)OP(=O)(O)O)[C@H](C(=O)O)N" RGP SMILES "OpenEye OEToolkits" 1.5.0 "C(CC(=O)OP(=O)(O)O)C(C(=O)O)N" RGP InChI InChI 1.03 "InChI=1S/C5H10NO7P/c6-3(5(8)9)1-2-4(7)13-14(10,11)12/h3H,1-2,6H2,(H,8,9)(H2,10,11,12)/t3-/m1/s1" RGP InChIKey InChI 1.03 PJRXVIJAERNUIP-GSVOUGTGSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RGP "SYSTEMATIC NAME" ACDLabs 10.04 "5-oxo-5-(phosphonooxy)-D-norvaline" RGP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-amino-5-oxo-5-phosphonooxy-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RGP "Create component" 2005-07-20 RCSB RGP "Modify descriptor" 2011-06-04 RCSB RGP "Modify synonyms" 2020-06-05 PDBE RGP "Modify parent residue" 2021-06-25 PDBE RGP "Modify backbone" 2023-11-03 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RGP _pdbx_chem_comp_synonyms.name "5-OXO-5-(PHOSPHONOOXY)-D-NORVALINE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #