data_RH5 # _chem_comp.id RH5 _chem_comp.name "4-[(3~{R})-1-oxidanyl-3,4-dihydro-2,1-benzoxaborinin-3-yl]-2-(pyridin-3-ylmethoxy)benzenecarboximidamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H20 B N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-08-16 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 373.213 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RH5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6SKB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RH5 C10 C1 C 0 1 Y N N N N N -34.843 -23.216 -22.514 0.891 2.302 -0.141 C10 RH5 1 RH5 C12 C2 C 0 1 Y N N N N N -35.094 -23.038 -21.159 0.866 0.936 0.086 C12 RH5 2 RH5 C13 C3 C 0 1 Y N N N N N -35.138 -24.157 -20.332 -0.336 0.257 0.120 C13 RH5 3 RH5 C15 C4 C 0 1 Y N N N N N -34.917 -25.425 -20.849 -1.527 0.941 -0.073 C15 RH5 4 RH5 C17 C5 C 0 1 N N N N N N -34.840 -26.433 -18.629 -2.653 -1.134 0.198 C17 RH5 5 RH5 C20 C6 C 0 1 Y N N N N N -33.564 -25.790 -18.144 -4.050 -1.699 0.199 C20 RH5 6 RH5 C21 C7 C 0 1 Y N N N N N -33.511 -25.127 -16.926 -4.622 -2.159 -0.977 C21 RH5 7 RH5 C28 C8 C 0 1 Y N N N N N -32.392 -25.845 -18.880 -4.775 -1.771 1.374 C28 RH5 8 RH5 N01 N1 N 0 1 N N N N N N -34.835 -27.162 -24.127 -3.896 2.412 -0.598 N01 RH5 9 RH5 C04 C9 C 0 1 N N N N N N -34.420 -26.934 -22.857 -2.769 3.060 -0.510 C04 RH5 10 RH5 N05 N2 N 0 1 N N N N N N -33.824 -27.890 -22.228 -2.755 4.435 -0.611 N05 RH5 11 RH5 C07 C10 C 0 1 Y N N N N N -34.652 -25.611 -22.218 -1.505 2.321 -0.303 C07 RH5 12 RH5 C08 C11 C 0 1 Y N N N N N -34.621 -24.475 -23.039 -0.285 2.997 -0.330 C08 RH5 13 RH5 O16 O1 O 0 1 N N N N N N -34.924 -26.559 -20.063 -2.708 0.274 -0.041 O16 RH5 14 RH5 C23 C12 C 0 1 Y N N N N N -32.334 -24.529 -16.511 -5.910 -2.670 -0.928 C23 RH5 15 RH5 C25 C13 C 0 1 Y N N N N N -31.225 -24.635 -17.325 -6.576 -2.705 0.282 C25 RH5 16 RH5 N27 N3 N 0 1 Y N N N N N -31.237 -25.278 -18.503 -5.997 -2.265 1.383 N27 RH5 17 RH5 C30 C14 C 0 1 N N R N N N -35.327 -21.663 -20.575 2.156 0.188 0.297 C30 RH5 18 RH5 C32 C15 C 0 1 N N N N N N -34.807 -21.508 -19.153 2.809 -0.084 -1.055 C32 RH5 19 RH5 C35 C16 C 0 1 Y N N N N N -35.066 -20.113 -18.638 4.149 -0.748 -0.888 C35 RH5 20 RH5 C36 C17 C 0 1 Y N N N N N -35.262 -19.871 -17.278 4.689 -1.497 -1.914 C36 RH5 21 RH5 C38 C18 C 0 1 Y N N N N N -35.488 -18.585 -16.812 5.923 -2.102 -1.754 C38 RH5 22 RH5 C40 C19 C 0 1 Y N N N N N -35.525 -17.526 -17.698 6.628 -1.962 -0.572 C40 RH5 23 RH5 C42 C20 C 0 1 Y N N N N N -35.331 -17.747 -19.055 6.098 -1.215 0.463 C42 RH5 24 RH5 C44 C21 C 0 1 Y N N N N N -35.092 -19.036 -19.560 4.859 -0.610 0.305 C44 RH5 25 RH5 B45 B1 B 0 1 N N N N N N -34.804 -19.318 -21.048 4.216 0.241 1.465 B45 RH5 26 RH5 O46 O2 O 0 1 N N N N N N -34.150 -18.435 -21.839 4.778 0.285 2.768 O46 RH5 27 RH5 O48 O3 O 0 1 N N N N N N -34.666 -20.645 -21.375 3.029 0.969 1.123 O48 RH5 28 RH5 H1 H1 H 0 1 N N N N N N -34.821 -22.356 -23.168 1.835 2.826 -0.166 H1 RH5 29 RH5 H2 H2 H 0 1 N N N N N N -35.346 -24.037 -19.279 -0.348 -0.809 0.297 H2 RH5 30 RH5 H3 H3 H 0 1 N N N N N N -35.688 -25.822 -18.285 -2.184 -1.321 1.164 H3 RH5 31 RH5 H4 H4 H 0 1 N N N N N N -34.910 -27.439 -18.189 -2.068 -1.613 -0.588 H4 RH5 32 RH5 H5 H5 H 0 1 N N N N N N -34.390 -25.078 -16.301 -4.078 -2.119 -1.909 H5 RH5 33 RH5 H6 H6 H 0 1 N N N N N N -32.410 -26.379 -19.818 -4.334 -1.419 2.295 H6 RH5 34 RH5 H7 H7 H 0 1 N N N N N N -35.283 -26.361 -24.524 -3.899 1.442 -0.594 H7 RH5 35 RH5 H8 H8 H 0 1 N N N N N N -33.507 -27.750 -21.290 -3.584 4.919 -0.747 H8 RH5 36 RH5 H9 H9 H 0 1 N N N N N N -33.679 -28.771 -22.678 -1.916 4.917 -0.545 H9 RH5 37 RH5 H10 H10 H 0 1 N N N N N N -34.421 -24.585 -24.095 -0.261 4.062 -0.506 H10 RH5 38 RH5 H11 H11 H 0 1 N N N N N N -32.285 -23.993 -15.574 -6.387 -3.037 -1.825 H11 RH5 39 RH5 H12 H12 H 0 1 N N N N N N -30.302 -24.178 -16.998 -7.579 -3.102 0.329 H12 RH5 40 RH5 H13 H13 H 0 1 N N N N N N -36.410 -21.469 -20.568 1.947 -0.760 0.793 H13 RH5 41 RH5 H14 H14 H 0 1 N N N N N N -35.316 -22.234 -18.502 2.160 -0.734 -1.642 H14 RH5 42 RH5 H15 H15 H 0 1 N N N N N N -33.724 -21.702 -19.142 2.941 0.860 -1.584 H15 RH5 43 RH5 H16 H16 H 0 1 N N N N N N -35.237 -20.695 -16.580 4.147 -1.612 -2.841 H16 RH5 44 RH5 H17 H17 H 0 1 N N N N N N -35.635 -18.411 -15.756 6.340 -2.688 -2.560 H17 RH5 45 RH5 H18 H18 H 0 1 N N N N N N -35.705 -16.525 -17.335 7.591 -2.437 -0.458 H18 RH5 46 RH5 H19 H19 H 0 1 N N N N N N -35.365 -16.910 -19.737 6.644 -1.103 1.388 H19 RH5 47 RH5 H20 H20 H 0 1 N N N N N N -33.683 -18.905 -22.520 4.289 0.844 3.388 H20 RH5 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RH5 N01 C04 DOUB N N 1 RH5 C08 C10 DOUB Y N 2 RH5 C08 C07 SING Y N 3 RH5 C04 N05 SING N N 4 RH5 C04 C07 SING N N 5 RH5 C10 C12 SING Y N 6 RH5 C07 C15 DOUB Y N 7 RH5 O46 B45 SING N N 8 RH5 O48 B45 SING N N 9 RH5 O48 C30 SING N N 10 RH5 C12 C30 SING N N 11 RH5 C12 C13 DOUB Y N 12 RH5 B45 C44 SING N N 13 RH5 C15 C13 SING Y N 14 RH5 C15 O16 SING N N 15 RH5 C30 C32 SING N N 16 RH5 O16 C17 SING N N 17 RH5 C44 C42 DOUB Y N 18 RH5 C44 C35 SING Y N 19 RH5 C32 C35 SING N N 20 RH5 C42 C40 SING Y N 21 RH5 C28 N27 DOUB Y N 22 RH5 C28 C20 SING Y N 23 RH5 C35 C36 DOUB Y N 24 RH5 C17 C20 SING N N 25 RH5 N27 C25 SING Y N 26 RH5 C20 C21 DOUB Y N 27 RH5 C40 C38 DOUB Y N 28 RH5 C25 C23 DOUB Y N 29 RH5 C36 C38 SING Y N 30 RH5 C21 C23 SING Y N 31 RH5 C10 H1 SING N N 32 RH5 C13 H2 SING N N 33 RH5 C17 H3 SING N N 34 RH5 C17 H4 SING N N 35 RH5 C21 H5 SING N N 36 RH5 C28 H6 SING N N 37 RH5 N01 H7 SING N N 38 RH5 N05 H8 SING N N 39 RH5 N05 H9 SING N N 40 RH5 C08 H10 SING N N 41 RH5 C23 H11 SING N N 42 RH5 C25 H12 SING N N 43 RH5 C30 H13 SING N N 44 RH5 C32 H14 SING N N 45 RH5 C32 H15 SING N N 46 RH5 C36 H16 SING N N 47 RH5 C38 H17 SING N N 48 RH5 C40 H18 SING N N 49 RH5 C42 H19 SING N N 50 RH5 O46 H20 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RH5 InChI InChI 1.03 "InChI=1S/C21H20BN3O3/c23-21(24)17-8-7-16(11-20(17)27-13-14-4-3-9-25-12-14)19-10-15-5-1-2-6-18(15)22(26)28-19/h1-9,11-12,19,26H,10,13H2,(H3,23,24)/t19-/m1/s1" RH5 InChIKey InChI 1.03 YENXZRUMZHNJKP-LJQANCHMSA-N RH5 SMILES_CANONICAL CACTVS 3.385 "NC(=N)c1ccc(cc1OCc2cccnc2)[C@H]3Cc4ccccc4B(O)O3" RH5 SMILES CACTVS 3.385 "NC(=N)c1ccc(cc1OCc2cccnc2)[CH]3Cc4ccccc4B(O)O3" RH5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/c1ccc(cc1OCc2cccnc2)[C@H]3Cc4ccccc4B(O3)O)\N" RH5 SMILES "OpenEye OEToolkits" 2.0.7 "B1(c2ccccc2CC(O1)c3ccc(c(c3)OCc4cccnc4)C(=N)N)O" # _pdbx_chem_comp_identifier.comp_id RH5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[(3~{R})-1-oxidanyl-3,4-dihydro-2,1-benzoxaborinin-3-yl]-2-(pyridin-3-ylmethoxy)benzenecarboximidamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RH5 "Create component" 2019-08-16 EBI RH5 "Initial release" 2019-09-25 RCSB RH5 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id RH5 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B45 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #