data_RHA # _chem_comp.id RHA _chem_comp.name 6-deoxy-1-O-phosphono-alpha-L-rhamnopyranose _chem_comp.type L-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H13 O8 P" _chem_comp.mon_nstd_parent_comp_id RAM _chem_comp.pdbx_synonyms ;6-DEOXY-MANNOSE-1'-PHOSPHATE; 6-deoxy-1-O-phosphono-alpha-L-mannopyranose; 6-deoxy-1-O-phosphono-alpha-L-rhamnose; 6-deoxy-1-O-phosphono-L-rhamnose; 6-deoxy-1-O-phosphono-rhamnose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 244.136 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RHA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1TLP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 RHA "6-DEOXY-MANNOSE-1'-PHOSPHATE" PDB ? 2 RHA 6-deoxy-1-O-phosphono-alpha-L-mannopyranose PDB ? 3 RHA 6-deoxy-1-O-phosphono-alpha-L-rhamnose PDB ? 4 RHA 6-deoxy-1-O-phosphono-L-rhamnose PDB ? 5 RHA 6-deoxy-1-O-phosphono-rhamnose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RHA C1 C1 C 0 1 N N S 51.183 16.914 -8.254 -0.573 -0.578 0.188 C1 RHA 1 RHA O1 O1 O 0 1 N N N 50.920 18.137 -7.643 -0.221 0.621 0.879 O1 RHA 2 RHA C2 C2 C 0 1 N N R 50.171 16.113 -7.502 -1.502 -0.237 -0.979 C2 RHA 3 RHA O2 O2 O 0 1 N N N 49.976 14.742 -8.034 -1.834 -1.431 -1.691 O2 RHA 4 RHA C3 C3 C 0 1 N N R 48.865 16.750 -7.787 -0.786 0.739 -1.918 C3 RHA 5 RHA O3 O3 O 0 1 N N N 48.022 16.009 -6.924 -1.581 0.951 -3.087 O3 RHA 6 RHA C4 C4 C 0 1 N N R 48.610 16.502 -9.263 0.565 0.134 -2.315 C4 RHA 7 RHA O4 O4 O 0 1 N N N 47.268 16.717 -9.593 1.313 1.089 -3.070 O4 RHA 8 RHA C5 C5 C 0 1 N N S 49.572 17.376 -10.084 1.338 -0.232 -1.046 C5 RHA 9 RHA O5 O5 O 0 1 N N N 50.917 16.967 -9.678 0.608 -1.207 -0.303 O5 RHA 10 RHA C6 C6 C 0 1 N N N 49.360 17.397 -11.604 2.704 -0.804 -1.431 C6 RHA 11 RHA P P P 0 1 N N N 51.715 18.902 -6.596 0.016 0.218 2.419 P RHA 12 RHA O1P O1P O 0 1 N N N 53.231 19.053 -6.870 1.108 -0.777 2.505 O1P RHA 13 RHA O2P O2P O 0 1 N N N 51.194 20.234 -6.325 0.419 1.530 3.261 O2P RHA 14 RHA O3P O3P O 0 1 N N N 51.667 18.103 -5.418 -1.334 -0.414 3.024 O3P RHA 15 RHA H1 H1 H 0 1 N N N 52.231 16.535 -8.214 -1.085 -1.254 0.873 H1 RHA 16 RHA H2 H2 H 0 1 N N N 50.509 16.070 -6.440 -2.413 0.224 -0.598 H2 RHA 17 RHA HO2 HO2 H 0 1 N Y N 49.332 14.232 -7.555 -2.275 -2.018 -1.062 HO2 RHA 18 RHA H3 H3 H 0 1 N N N 48.748 17.846 -7.620 -0.627 1.688 -1.407 H3 RHA 19 RHA HO3 HO3 H 0 1 N Y N 47.184 16.417 -7.106 -2.424 1.319 -2.788 HO3 RHA 20 RHA H4 H4 H 0 1 N N N 48.810 15.432 -9.507 0.402 -0.759 -2.916 H4 RHA 21 RHA HO4 HO4 H 0 1 N Y N 47.108 16.561 -10.516 2.153 0.669 -3.298 HO4 RHA 22 RHA H5 H5 H 0 1 N N N 49.372 18.448 -9.854 1.478 0.659 -0.435 H5 RHA 23 RHA H61 H61 H 0 1 N N N 50.057 18.030 -12.199 3.256 -1.064 -0.528 H61 RHA 24 RHA H62 H62 H 0 1 N N N 49.375 16.353 -11.997 2.566 -1.696 -2.041 H62 RHA 25 RHA H63 H63 H 0 1 N N N 48.307 17.686 -11.830 3.263 -0.060 -1.997 H63 RHA 26 RHA HOP2 HOP2 H 0 0 N N N 51.690 20.711 -5.671 0.552 1.245 4.176 HOP2 RHA 27 RHA HOP3 HOP3 H 0 0 N N N 52.163 18.580 -4.764 -2.018 0.264 2.949 HOP3 RHA 28 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RHA C1 O1 SING N N 1 RHA C1 C2 SING N N 2 RHA C1 O5 SING N N 3 RHA C1 H1 SING N N 4 RHA O1 P SING N N 5 RHA C2 O2 SING N N 6 RHA C2 C3 SING N N 7 RHA C2 H2 SING N N 8 RHA O2 HO2 SING N N 9 RHA C3 O3 SING N N 10 RHA C3 C4 SING N N 11 RHA C3 H3 SING N N 12 RHA O3 HO3 SING N N 13 RHA C4 O4 SING N N 14 RHA C4 C5 SING N N 15 RHA C4 H4 SING N N 16 RHA O4 HO4 SING N N 17 RHA C5 O5 SING N N 18 RHA C5 C6 SING N N 19 RHA C5 H5 SING N N 20 RHA C6 H61 SING N N 21 RHA C6 H62 SING N N 22 RHA C6 H63 SING N N 23 RHA P O1P DOUB N N 24 RHA P O2P SING N N 25 RHA P O3P SING N N 26 RHA O2P HOP2 SING N N 27 RHA O3P HOP3 SING N N 28 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RHA SMILES ACDLabs 10.04 "O=P(OC1OC(C(O)C(O)C1O)C)(O)O" RHA SMILES_CANONICAL CACTVS 3.341 "C[C@@H]1O[C@@H](O[P](O)(O)=O)[C@H](O)[C@H](O)[C@H]1O" RHA SMILES CACTVS 3.341 "C[CH]1O[CH](O[P](O)(O)=O)[CH](O)[CH](O)[CH]1O" RHA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)OP(=O)(O)O)O)O)O" RHA SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(C(C(C(O1)OP(=O)(O)O)O)O)O" RHA InChI InChI 1.03 "InChI=1S/C6H13O8P/c1-2-3(7)4(8)5(9)6(13-2)14-15(10,11)12/h2-9H,1H3,(H2,10,11,12)/t2-,3-,4+,5+,6-/m0/s1" RHA InChIKey InChI 1.03 PTVXQARCLQPGIR-YJRYQGEOSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RHA "SYSTEMATIC NAME" ACDLabs 10.04 6-deoxy-1-O-phosphono-alpha-L-mannopyranose RHA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyl-oxan-2-yl] dihydrogen phosphate" RHA "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-L-Rhap1PO3 # _pdbx_chem_comp_related.comp_id RHA _pdbx_chem_comp_related.related_comp_id RAM _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 RHA C1 RAM C1 "Carbohydrate core" 2 RHA C2 RAM C2 "Carbohydrate core" 3 RHA C3 RAM C3 "Carbohydrate core" 4 RHA C4 RAM C4 "Carbohydrate core" 5 RHA C5 RAM C5 "Carbohydrate core" 6 RHA C6 RAM C6 "Carbohydrate core" 7 RHA O1 RAM O1 "Carbohydrate core" 8 RHA O2 RAM O2 "Carbohydrate core" 9 RHA O3 RAM O3 "Carbohydrate core" 10 RHA O4 RAM O4 "Carbohydrate core" 11 RHA O5 RAM O5 "Carbohydrate core" 12 RHA H1 RAM H1 "Carbohydrate core" 13 RHA H2 RAM H2 "Carbohydrate core" 14 RHA H3 RAM H3 "Carbohydrate core" 15 RHA H4 RAM H4 "Carbohydrate core" 16 RHA H5 RAM H5 "Carbohydrate core" 17 RHA H61 RAM H61 "Carbohydrate core" 18 RHA H62 RAM H62 "Carbohydrate core" 19 RHA H63 RAM H63 "Carbohydrate core" 20 RHA HO2 RAM HO2 "Carbohydrate core" 21 RHA HO3 RAM HO3 "Carbohydrate core" 22 RHA HO4 RAM HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support RHA "CARBOHYDRATE ISOMER" L PDB ? RHA "CARBOHYDRATE RING" pyranose PDB ? RHA "CARBOHYDRATE ANOMER" alpha PDB ? RHA "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RHA "Create component" 1999-07-08 EBI RHA "Modify descriptor" 2011-06-04 RCSB RHA "Other modification" 2020-07-03 RCSB RHA "Modify parent residue" 2020-07-17 RCSB RHA "Modify name" 2020-07-17 RCSB RHA "Modify synonyms" 2020-07-17 RCSB RHA "Modify linking type" 2020-07-17 RCSB RHA "Modify leaving atom flag" 2020-07-17 RCSB ##