data_RHO # _chem_comp.id RHO _chem_comp.name TETRAMETHYLRHODAMINE-5-MALEIMIDE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H25 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms TMR _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-05-23 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 483.515 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RHO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 1NWK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RHO C C C 0 1 Y N N -1.877 -1.562 -0.529 2.906 3.705 -0.169 C RHO 1 RHO C1 C1 C 0 1 Y N N -2.559 -0.621 0.294 3.555 2.402 -0.184 C1 RHO 2 RHO C2 C2 C 0 1 Y N N -3.285 -1.031 1.434 2.860 1.231 -0.203 C2 RHO 3 RHO C3 C3 C 0 1 Y N N -3.383 -2.411 1.847 1.449 1.244 -0.222 C3 RHO 4 RHO C4 C4 C 0 1 Y N N -2.680 -3.348 1.011 0.725 2.570 -0.213 C4 RHO 5 RHO C5 C5 C 0 1 Y N N -1.954 -2.940 -0.141 1.567 3.827 -0.185 C5 RHO 6 RHO N N N 0 1 N N N -1.121 -1.097 -1.758 3.694 4.858 -0.143 N RHO 7 RHO C6 C6 C 0 1 N N N -1.038 0.232 -2.144 3.060 6.178 -0.134 C6 RHO 8 RHO C7 C7 C 0 1 N N N -0.449 -1.955 -2.618 5.155 4.746 -0.126 C7 RHO 9 RHO OH1 OH1 O 0 1 N N N -3.923 0.001 2.126 3.541 0.058 -0.209 OH1 RHO 10 RHO C8 C8 C 0 1 N N N -4.176 -2.680 3.031 0.745 0.074 -0.247 C8 RHO 11 RHO C9 C9 C 0 1 N N N -4.682 -0.268 3.265 2.909 -1.138 -0.235 C9 RHO 12 RHO C10 C10 C 0 1 N N N -5.308 0.848 3.875 3.637 -2.316 -0.241 C10 RHO 13 RHO C11 C11 C 0 1 N N N -6.119 0.700 5.048 2.977 -3.538 -0.267 C11 RHO 14 RHO C12 C12 C 0 1 N N N -6.236 -0.629 5.581 1.586 -3.588 -0.287 C12 RHO 15 RHO C13 C13 C 0 1 N N N -5.610 -1.734 4.952 0.851 -2.422 -0.280 C13 RHO 16 RHO C14 C14 C 0 1 N N N -4.817 -1.603 3.764 1.507 -1.192 -0.254 C14 RHO 17 RHO N1 N1 N 0 1 N N N -6.777 1.796 5.635 3.713 -4.722 -0.273 N1 RHO 18 RHO C15 C15 C 0 1 N N N -6.838 3.070 5.075 3.026 -6.012 -0.173 C15 RHO 19 RHO C16 C16 C 0 1 N N N -7.554 1.676 6.784 5.174 -4.676 -0.380 C16 RHO 20 RHO C17 C17 C 0 1 Y N N -4.603 -4.160 3.226 -0.730 0.074 -0.266 C17 RHO 21 RHO C18 C18 C 0 1 Y N N -4.032 -4.806 4.391 -1.454 -0.264 0.896 C18 RHO 22 RHO C19 C19 C 0 1 Y N N -4.444 -6.140 4.686 -2.848 -0.255 0.865 C19 RHO 23 RHO C20 C20 C 0 1 Y N N -5.381 -6.899 3.902 -3.512 0.074 -0.306 C20 RHO 24 RHO C21 C21 C 0 1 Y N N -5.905 -6.228 2.743 -2.794 0.402 -1.452 C21 RHO 25 RHO C22 C22 C 0 1 Y N N -5.527 -4.900 2.416 -1.416 0.402 -1.436 C22 RHO 26 RHO C23 C23 C 0 1 N N N -3.043 -4.235 5.409 -0.741 -0.614 2.138 C23 RHO 27 RHO OH2 OH2 O 0 1 N N N -3.295 -4.124 6.630 -1.437 -0.926 3.249 OH2 RHO 28 RHO OH3 OH3 O 0 1 N N N -1.948 -3.816 4.983 0.474 -0.620 2.160 OH3 RHO 29 RHO N2 N2 N 0 1 N N N -5.809 -8.261 4.227 -4.912 0.078 -0.336 N2 RHO 30 RHO C24 C24 C 0 1 N N N -5.015 -9.115 4.886 -5.667 -0.370 -1.355 C24 RHO 31 RHO OH4 OH4 O 0 1 N N N -3.884 -8.969 5.313 -5.251 -0.841 -2.393 OH4 RHO 32 RHO C25 C25 C 0 1 N N N -5.777 -10.291 5.006 -7.091 -0.192 -0.995 C25 RHO 33 RHO C26 C26 C 0 1 N N N -6.999 -10.079 4.409 -7.116 0.358 0.231 C26 RHO 34 RHO C27 C27 C 0 1 N N N -7.013 -8.760 3.908 -5.707 0.524 0.653 C27 RHO 35 RHO OH5 OH5 O 0 1 N N N -7.945 -8.241 3.320 -5.333 0.992 1.709 OH5 RHO 36 RHO HC1 HC1 H 0 1 N N N -2.520 0.428 0.041 4.635 2.363 -0.174 HC1 RHO 37 RHO HC4 HC4 H 0 1 N N N -2.705 -4.397 1.268 0.094 2.611 -1.100 HC4 RHO 38 RHO HC5 HC5 H 0 1 N N N -1.449 -3.685 -0.738 1.102 4.802 -0.177 HC5 RHO 39 RHO HC61 1HC6 H 0 0 N N N -0.514 0.301 -3.109 3.830 6.950 -0.113 HC61 RHO 40 RHO HC62 2HC6 H 0 0 N N N -0.483 0.801 -1.383 2.452 6.296 -1.030 HC62 RHO 41 RHO HC63 3HC6 H 0 0 N N N -2.051 0.649 -2.246 2.428 6.272 0.750 HC63 RHO 42 RHO HC71 1HC7 H 0 0 N N N -0.205 -2.888 -2.088 5.595 5.743 -0.106 HC71 RHO 43 RHO HC72 2HC7 H 0 0 N N N 0.479 -1.475 -2.963 5.466 4.194 0.761 HC72 RHO 44 RHO HC73 3HC7 H 0 0 N N N -1.088 -2.182 -3.484 5.490 4.218 -1.018 HC73 RHO 45 RHO H10C CH10 H 0 0 N N N -5.171 1.830 3.447 4.716 -2.285 -0.225 H10C RHO 46 RHO H12C CH12 H 0 0 N N N -6.813 -0.789 6.480 1.081 -4.543 -0.307 H12C RHO 47 RHO H131 1H13 H 0 0 N N N -6.472 -2.315 4.592 ? ? ? H131 RHO 48 RHO H132 2H13 H 0 0 N N N -4.930 -2.152 5.709 -0.228 -2.461 -0.295 H132 RHO 49 RHO H151 1H15 H 0 0 N N N -6.319 3.069 4.105 2.782 -6.373 -1.172 H151 RHO 50 RHO H152 2H15 H 0 0 N N N -6.353 3.791 5.750 3.676 -6.732 0.325 H152 RHO 51 RHO H153 3H15 H 0 0 N N N -7.890 3.356 4.927 2.109 -5.891 0.404 H153 RHO 52 RHO H161 1H16 H 0 0 N N N -8.145 0.749 6.732 5.508 -3.639 -0.354 H161 RHO 53 RHO H162 2H16 H 0 0 N N N -8.231 2.539 6.860 5.616 -5.221 0.454 H162 RHO 54 RHO H163 3H16 H 0 0 N N N -6.900 1.644 7.668 5.484 -5.135 -1.319 H163 RHO 55 RHO H19C CH19 H 0 0 N N N -4.022 -6.613 5.560 -3.409 -0.508 1.752 H19C RHO 56 RHO H21C CH21 H 0 0 N N N -6.604 -6.748 2.105 -3.320 0.657 -2.360 H21C RHO 57 RHO H22C CH22 H 0 0 N N N -5.945 -4.435 1.536 -0.866 0.658 -2.330 H22C RHO 58 RHO HO3 HO3 H 0 1 N N N -1.445 -3.454 5.703 ? ? ? HO3 RHO 59 RHO H25C CH25 H 0 0 N N N -5.458 -11.205 5.485 -7.946 -0.454 -1.601 H25C RHO 60 RHO H26C CH26 H 0 0 N N N -7.804 -10.795 4.337 -7.994 0.623 0.800 H26C RHO 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RHO C C1 DOUB Y N 1 RHO C C5 SING Y N 2 RHO C N SING N N 3 RHO C1 C2 SING Y N 4 RHO C1 HC1 SING N N 5 RHO C2 C3 DOUB Y N 6 RHO C2 OH1 SING N N 7 RHO C3 C4 SING Y N 8 RHO C3 C8 SING N N 9 RHO C4 C5 DOUB Y N 10 RHO C4 HC4 SING N N 11 RHO C5 HC5 SING N N 12 RHO N C6 SING N N 13 RHO N C7 SING N N 14 RHO C6 HC61 SING N N 15 RHO C6 HC62 SING N N 16 RHO C6 HC63 SING N N 17 RHO C7 HC71 SING N N 18 RHO C7 HC72 SING N N 19 RHO C7 HC73 SING N N 20 RHO OH1 C9 SING N N 21 RHO C8 C14 DOUB N N 22 RHO C8 C17 SING N N 23 RHO C9 C10 DOUB N N 24 RHO C9 C14 SING N N 25 RHO C10 C11 SING N N 26 RHO C10 H10C SING N N 27 RHO C11 C12 DOUB N N 28 RHO C11 N1 SING N N 29 RHO C12 C13 SING N N 30 RHO C12 H12C SING N N 31 RHO C13 C14 SING N N 32 RHO C13 H131 SING N N 33 RHO C13 H132 SING N N 34 RHO N1 C15 SING N N 35 RHO N1 C16 SING N N 36 RHO C15 H151 SING N N 37 RHO C15 H152 SING N N 38 RHO C15 H153 SING N N 39 RHO C16 H161 SING N N 40 RHO C16 H162 SING N N 41 RHO C16 H163 SING N N 42 RHO C17 C18 DOUB Y N 43 RHO C17 C22 SING Y N 44 RHO C18 C19 SING Y N 45 RHO C18 C23 SING N N 46 RHO C19 C20 DOUB Y N 47 RHO C19 H19C SING N N 48 RHO C20 C21 SING Y N 49 RHO C20 N2 SING N N 50 RHO C21 C22 DOUB Y N 51 RHO C21 H21C SING N N 52 RHO C22 H22C SING N N 53 RHO C23 OH2 DOUB N N 54 RHO C23 OH3 SING N N 55 RHO OH3 HO3 SING N N 56 RHO N2 C24 SING N N 57 RHO N2 C27 SING N N 58 RHO C24 OH4 DOUB N N 59 RHO C24 C25 SING N N 60 RHO C25 C26 DOUB N N 61 RHO C25 H25C SING N N 62 RHO C26 C27 SING N N 63 RHO C26 H26C SING N N 64 RHO C27 OH5 DOUB N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RHO SMILES ACDLabs 10.04 "O=C1C=CC(=O)N1c5ccc(C=2c4c(OC=3C=2CC=C(N(C)C)C=3)cc(cc4)N(C)C)c(C(=O)O)c5" RHO SMILES_CANONICAL CACTVS 3.341 "CN(C)C1=CCC2=C(c3ccc(cc3OC2=C1)N(C)C)c4ccc(cc4C(O)=O)N5C(=O)C=CC5=O" RHO SMILES CACTVS 3.341 "CN(C)C1=CCC2=C(c3ccc(cc3OC2=C1)N(C)C)c4ccc(cc4C(O)=O)N5C(=O)C=CC5=O" RHO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN(C)c1ccc2c(c1)OC3=CC(=CCC3=C2c4ccc(cc4C(=O)O)N5C(=O)C=CC5=O)N(C)C" RHO SMILES "OpenEye OEToolkits" 1.5.0 "CN(C)c1ccc2c(c1)OC3=CC(=CCC3=C2c4ccc(cc4C(=O)O)N5C(=O)C=CC5=O)N(C)C" RHO InChI InChI 1.03 "InChI=1S/C28H25N3O5/c1-29(2)16-5-9-20-23(14-16)36-24-15-17(30(3)4)6-10-21(24)27(20)19-8-7-18(13-22(19)28(34)35)31-25(32)11-12-26(31)33/h5-9,11-15H,10H2,1-4H3,(H,34,35)" RHO InChIKey InChI 1.03 KGFLZYXDJDOIEE-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RHO "SYSTEMATIC NAME" ACDLabs 10.04 "2-[3,6-bis(dimethylamino)-1H-xanthen-9-yl]-5-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)benzoic acid" RHO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[3,6-bis(dimethylamino)-1H-xanthen-9-yl]-5-(2,5-dioxopyrrol-1-yl)benzoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RHO "Create component" 2001-05-23 RCSB RHO "Modify descriptor" 2011-06-04 RCSB RHO "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RHO _pdbx_chem_comp_synonyms.name TMR _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##