data_RIL # _chem_comp.id RIL _chem_comp.name "[(4R)-2,2-DIMETHYL-1,3-DIOXOLAN-4-YL]METHYL HYDROGEN HEX-5-ENYLPHOSPHONATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H23 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "O-[(R)-1,2,-O-ISOPROPYLIDENE-SN-GLYCEROL]6-HEXENYL PHOSPHONATE; O-[(R)-IPG] 6-HEXENYL PHOSPHONATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-10-16 _chem_comp.pdbx_modified_date 2020-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 278.282 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RIL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1R4Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RIL C1 C1 C 0 1 N N N 21.684 58.175 -5.720 -3.829 -1.717 -1.835 C1 RIL 1 RIL C2 C2 C 0 1 N N N 20.891 58.487 -6.759 -3.080 -0.715 -1.362 C2 RIL 2 RIL C5 C5 C 0 1 N N N 19.496 57.979 -6.495 -1.581 -0.743 -1.304 C5 RIL 3 RIL C7 C7 C 0 1 N N N 18.606 58.335 -7.688 -1.076 -0.539 0.126 C7 RIL 4 RIL C10 C10 C 0 1 N N N 17.183 57.824 -7.427 0.453 -0.537 0.177 C10 RIL 5 RIL C13 C13 C 0 1 N N N 16.302 58.164 -8.637 0.982 -0.311 1.588 C13 RIL 6 RIL P16 P16 P 0 1 N N S 14.611 57.533 -8.343 2.784 -0.373 1.705 P16 RIL 7 RIL O20 O20 O 0 1 N N N 14.015 58.266 -7.109 3.347 -1.684 1.275 O20 RIL 8 RIL O21 O21 O 0 1 N N N 13.673 57.851 -9.566 3.302 0.911 0.883 O21 RIL 9 RIL C23 C23 C 0 1 N N N 14.198 57.360 -10.798 2.932 2.227 1.254 C23 RIL 10 RIL C24 C24 C 0 1 N N S 13.119 57.442 -11.868 3.573 3.208 0.296 C24 RIL 11 RIL C27 C27 C 0 1 N N N 12.789 58.929 -12.168 3.241 4.652 0.584 C27 RIL 12 RIL O28 O28 O 0 1 N N N 11.972 56.782 -11.401 3.068 3.020 -1.029 O28 RIL 13 RIL C30 C30 C 0 1 N N N 10.793 57.848 -11.384 3.206 4.306 -1.657 C30 RIL 14 RIL O31 O31 O 0 1 N N N 11.418 59.163 -12.024 3.502 5.300 -0.662 O31 RIL 15 RIL C34 C34 C 0 1 N N N 10.345 58.121 -9.945 4.357 4.258 -2.654 C34 RIL 16 RIL C38 C38 C 0 1 N N N 9.614 57.350 -12.222 1.892 4.655 -2.343 C38 RIL 17 RIL O1 O1 O 0 1 N N N ? ? ? 3.071 0.037 3.237 O1 RIL 18 RIL H11 1H1 H 0 1 N N N 22.704 58.547 -5.913 -4.911 -1.654 -1.858 H11 RIL 19 RIL H12 2H1 H 0 1 N N N 21.508 57.647 -4.768 -3.363 -2.622 -2.208 H12 RIL 20 RIL H2 H2 H 0 1 N N N 21.293 59.034 -7.628 -3.577 0.184 -1.006 H2 RIL 21 RIL H51 1H5 H 0 1 N N N 19.083 58.353 -5.529 -1.196 -1.691 -1.699 H51 RIL 22 RIL H52 2H5 H 0 1 N N N 19.477 56.889 -6.260 -1.193 0.052 -1.952 H52 RIL 23 RIL H71 1H7 H 0 1 N N N 19.021 57.959 -8.652 -1.463 -1.336 0.773 H71 RIL 24 RIL H72 2H7 H 0 1 N N N 18.628 59.425 -7.922 -1.462 0.409 0.520 H72 RIL 25 RIL H101 1H10 H 0 0 N N N 16.761 58.213 -6.471 0.832 -1.497 -0.194 H101 RIL 26 RIL H102 2H10 H 0 0 N N N 17.161 56.738 -7.177 0.841 0.247 -0.484 H102 RIL 27 RIL H131 1H13 H 0 0 N N N 16.734 57.789 -9.594 0.639 0.653 1.978 H131 RIL 28 RIL H132 2H13 H 0 0 N N N 16.312 59.253 -8.876 0.588 -1.091 2.248 H132 RIL 29 RIL H231 1H23 H 0 0 N N N 14.620 56.333 -10.699 1.842 2.310 1.216 H231 RIL 30 RIL H232 2H23 H 0 0 N N N 15.134 57.886 -11.099 3.271 2.413 2.277 H232 RIL 31 RIL H24 H24 H 0 1 N N N 13.477 56.959 -12.807 4.657 3.053 0.265 H24 RIL 32 RIL H271 1H27 H 0 0 N N N 13.161 59.242 -13.171 2.181 4.795 0.826 H271 RIL 33 RIL H272 2H27 H 0 0 N N N 13.397 59.624 -11.542 3.853 5.088 1.378 H272 RIL 34 RIL H341 1H34 H 0 0 N N N 11.197 58.432 -9.296 4.226 5.021 -3.428 H341 RIL 35 RIL H342 2H34 H 0 0 N N N 9.518 58.869 -9.933 5.311 4.439 -2.150 H342 RIL 36 RIL H343 3H34 H 0 0 N N N 10.065 57.183 -9.411 4.404 3.279 -3.141 H343 RIL 37 RIL H381 1H38 H 0 0 N N N 9.268 56.342 -11.895 1.885 4.284 -3.372 H381 RIL 38 RIL H382 2H38 H 0 0 N N N 8.787 58.098 -12.210 1.049 4.206 -1.809 H382 RIL 39 RIL H383 3H38 H 0 0 N N N 9.923 57.089 -13.261 1.747 5.739 -2.366 H383 RIL 40 RIL HO1 HO1 H 0 1 N N N -0.878 -0.328 0.153 3.668 -0.537 3.763 HO1 RIL 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RIL C1 C2 DOUB N N 1 RIL C1 H11 SING N N 2 RIL C1 H12 SING N N 3 RIL C2 C5 SING N N 4 RIL C2 H2 SING N N 5 RIL C5 C7 SING N N 6 RIL C5 H51 SING N N 7 RIL C5 H52 SING N N 8 RIL C7 C10 SING N N 9 RIL C7 H71 SING N N 10 RIL C7 H72 SING N N 11 RIL C10 C13 SING N N 12 RIL C10 H101 SING N N 13 RIL C10 H102 SING N N 14 RIL C13 P16 SING N N 15 RIL C13 H131 SING N N 16 RIL C13 H132 SING N N 17 RIL P16 O20 DOUB N N 18 RIL P16 O21 SING N N 19 RIL P16 O1 SING N N 20 RIL O21 C23 SING N N 21 RIL C23 C24 SING N N 22 RIL C23 H231 SING N N 23 RIL C23 H232 SING N N 24 RIL C24 C27 SING N N 25 RIL C24 O28 SING N N 26 RIL C24 H24 SING N N 27 RIL C27 O31 SING N N 28 RIL C27 H271 SING N N 29 RIL C27 H272 SING N N 30 RIL O28 C30 SING N N 31 RIL C30 O31 SING N N 32 RIL C30 C34 SING N N 33 RIL C30 C38 SING N N 34 RIL C34 H341 SING N N 35 RIL C34 H342 SING N N 36 RIL C34 H343 SING N N 37 RIL C38 H381 SING N N 38 RIL C38 H382 SING N N 39 RIL C38 H383 SING N N 40 RIL O1 HO1 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RIL SMILES ACDLabs 10.04 "O=P(OCC1OC(OC1)(C)C)(O)CCCC\C=C" RIL SMILES_CANONICAL CACTVS 3.341 "CC1(C)OC[C@@H](CO[P@](O)(=O)CCCCC=C)O1" RIL SMILES CACTVS 3.341 "CC1(C)OC[CH](CO[P](O)(=O)CCCCC=C)O1" RIL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1(OC[C@H](O1)CO[P@](=O)(CCCCC=C)O)C" RIL SMILES "OpenEye OEToolkits" 1.5.0 "CC1(OCC(O1)COP(=O)(CCCCC=C)O)C" RIL InChI InChI 1.03 "InChI=1S/C12H23O5P/c1-4-5-6-7-8-18(13,14)16-10-11-9-15-12(2,3)17-11/h4,11H,1,5-10H2,2-3H3,(H,13,14)/t11-/m0/s1" RIL InChIKey InChI 1.03 BUTLRPVAJSANIT-NSHDSACASA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RIL "SYSTEMATIC NAME" ACDLabs 10.04 "[(4S)-2,2-dimethyl-1,3-dioxolan-4-yl]methyl hydrogen (S)-hex-5-en-1-ylphosphonate" RIL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(4S)-2,2-dimethyl-1,3-dioxolan-4-yl]methoxy-hex-5-enyl-phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RIL "Create component" 2003-10-16 RCSB RIL "Modify descriptor" 2011-06-04 RCSB RIL "Modify synonyms" 2020-05-27 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 RIL "O-[(R)-1,2,-O-ISOPROPYLIDENE-SN-GLYCEROL]6-HEXENYL PHOSPHONATE" ? ? 2 RIL "O-[(R)-IPG] 6-HEXENYL PHOSPHONATE" ? ? #