data_RIP
# 
_chem_comp.id                                    RIP 
_chem_comp.name                                  beta-D-ribopyranose 
_chem_comp.type                                  "D-saccharide, beta linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C5 H10 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "beta-D-ribose; D-ribose; ribose; RIBOSE(PYRANOSE FORM)" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        150.130 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RIP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1DRK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 RIP beta-D-ribose           PDB ? 
2 RIP D-ribose                PDB ? 
3 RIP ribose                  PDB ? 
4 RIP "RIBOSE(PYRANOSE FORM)" PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RIP C1  C1  C 0 1 N N R N N N 49.732 33.632 43.618 0.538  0.292  -1.219 C1  RIP 1  
RIP C2  C2  C 0 1 N N R N N N 49.036 33.099 44.894 -0.651 -0.575 -0.803 C2  RIP 2  
RIP C3  C3  C 0 1 N N R N N N 48.701 34.269 45.823 -0.960 -0.326 0.677  C3  RIP 3  
RIP C4  C4  C 0 1 N N R N N N 49.947 35.132 46.049 0.322  -0.541 1.489  C4  RIP 4  
RIP C5  C5  C 0 1 N N N N N N 50.577 35.563 44.747 1.438  0.324  0.899  C5  RIP 5  
RIP O1  O1  O 0 1 N Y N N N N 50.148 32.576 42.779 0.812  0.086  -2.606 O1  RIP 6  
RIP O2  O2  O 0 1 N N N N N N 47.840 32.383 44.582 -1.791 -0.235 -1.595 O2  RIP 7  
RIP O3  O3  O 0 1 N N N N N N 47.653 35.053 45.273 -1.419 1.015  0.852  O3  RIP 8  
RIP O4  O4  O 0 1 N N N N N N 49.611 36.278 46.764 0.095  -0.167 2.849  O4  RIP 9  
RIP O5  O5  O 0 1 N N N N N N 50.878 34.425 43.967 1.686  -0.061 -0.450 O5  RIP 10 
RIP H1  H1  H 0 1 N N N N N N 48.988 34.257 43.071 0.298  1.342  -1.049 H1  RIP 11 
RIP H2  H2  H 0 1 N N N N N N 49.738 32.395 45.398 -0.405 -1.627 -0.950 H2  RIP 12 
RIP H3  H3  H 0 1 N N N N N N 48.360 33.862 46.803 -1.729 -1.022 1.013  H3  RIP 13 
RIP H4  H4  H 0 1 N N N N N N 50.675 34.507 46.616 0.611  -1.591 1.442  H4  RIP 14 
RIP H51 H51 H 0 1 N N N N N N 49.942 36.295 44.195 1.138  1.371  0.927  H51 RIP 15 
RIP H52 H52 H 0 1 N N N N N N 51.469 36.211 44.906 2.347  0.192  1.486  H52 RIP 16 
RIP HO1 HO1 H 0 1 N Y N N N N 50.575 32.903 41.996 1.563  0.653  -2.829 HO1 RIP 17 
RIP HO2 HO2 H 0 1 N Y N N N N 47.412 32.055 45.365 -1.551 -0.402 -2.516 HO2 RIP 18 
RIP HO3 HO3 H 0 1 N Y N N N N 47.445 35.779 45.849 -1.601 1.128  1.795  HO3 RIP 19 
RIP HO4 HO4 H 0 1 N Y N N N N 50.383 36.813 46.904 0.926  -0.315 3.322  HO4 RIP 20 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RIP C1 C2  SING N N 1  
RIP C1 O1  SING N N 2  
RIP C1 O5  SING N N 3  
RIP C1 H1  SING N N 4  
RIP C2 C3  SING N N 5  
RIP C2 O2  SING N N 6  
RIP C2 H2  SING N N 7  
RIP C3 C4  SING N N 8  
RIP C3 O3  SING N N 9  
RIP C3 H3  SING N N 10 
RIP C4 C5  SING N N 11 
RIP C4 O4  SING N N 12 
RIP C4 H4  SING N N 13 
RIP C5 O5  SING N N 14 
RIP C5 H51 SING N N 15 
RIP C5 H52 SING N N 16 
RIP O1 HO1 SING N N 17 
RIP O2 HO2 SING N N 18 
RIP O3 HO3 SING N N 19 
RIP O4 HO4 SING N N 20 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RIP SMILES           ACDLabs              10.04 "OC1C(O)COC(O)C1O"                                                      
RIP SMILES_CANONICAL CACTVS               3.341 "O[C@@H]1CO[C@@H](O)[C@H](O)[C@@H]1O"                                   
RIP SMILES           CACTVS               3.341 "O[CH]1CO[CH](O)[CH](O)[CH]1O"                                          
RIP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H]([C@H]([C@H]([C@@H](O1)O)O)O)O"                                 
RIP SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(C(C(O1)O)O)O)O"                                                  
RIP InChI            InChI                1.03  "InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4-,5-/m1/s1" 
RIP InChIKey         InChI                1.03  SRBFZHDQGSBBOR-TXICZTDVSA-N                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RIP "SYSTEMATIC NAME"                     ACDLabs              10.04 beta-D-ribopyranose                  
RIP "SYSTEMATIC NAME"                     "OpenEye OEToolkits" 1.5.0 "(2R,3R,4R,5R)-oxane-2,3,4,5-tetrol" 
RIP "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML                 1.0   DRibpb                               
RIP "COMMON NAME"                         GMML                 1.0   b-D-ribopyranose                     
RIP "IUPAC CARBOHYDRATE SYMBOL"           PDB-CARE             1.0   b-D-Ribp                             
RIP "SNFG CARBOHYDRATE SYMBOL"            GMML                 1.0   Rib                                  
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
RIP "CARBOHYDRATE ISOMER"                 D        PDB ? 
RIP "CARBOHYDRATE RING"                   pyranose PDB ? 
RIP "CARBOHYDRATE ANOMER"                 beta     PDB ? 
RIP "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RIP "Create component"   1999-07-08 RCSB 
RIP "Modify descriptor"  2011-06-04 RCSB 
RIP "Other modification" 2019-08-12 RCSB 
RIP "Other modification" 2019-12-19 RCSB 
RIP "Other modification" 2020-07-03 RCSB 
RIP "Modify name"        2020-07-17 RCSB 
RIP "Modify synonyms"    2020-07-17 RCSB 
RIP "Modify PCM"         2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 RIP SER None Carbohydrate "Amino-acid side chain" "Any position" C1 OG  ? ? 
2 RIP SER None Carbohydrate "Amino-acid side chain" "Any position" C5 OG  ? ? 
3 RIP SER None Carbohydrate "Amino-acid side chain" "Any position" O5 CB  ? ? 
4 RIP THR None Carbohydrate "Amino-acid side chain" "Any position" C1 OG1 ? ? 
#