data_RIV
#
_chem_comp.id RIV
_chem_comp.name "5-chloro-N-({(5S)-2-oxo-3-[4-(3-oxomorpholin-4-yl)phenyl]-1,3-oxazolidin-5-yl}methyl)thiophene-2-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type ?
_chem_comp.formula "C19 H18 Cl N3 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Rivaroxaban
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-10-24
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 435.881
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RIV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2W26
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RIV C1 C1 C 0 1 N N N 9.643 1.777 18.433 9.643 1.777 18.433 C1 RIV 1
RIV N2 N2 N 0 1 N N N 8.303 2.377 18.109 8.303 2.377 18.109 N2 RIV 2
RIV C3 C3 C 0 1 N N N 10.053 0.667 17.441 10.053 0.667 17.441 C3 RIV 3
RIV C4 C4 C 0 1 N N N 7.671 2.122 16.881 7.671 2.122 16.881 C4 RIV 4
RIV O5 O5 O 0 1 N N N 9.768 1.124 16.111 9.768 1.124 16.111 O5 RIV 5
RIV C6 C6 C 0 1 N N N 8.355 1.223 15.853 8.355 1.223 15.853 C6 RIV 6
RIV C7 C7 C 0 1 Y N N 6.487 4.959 20.981 6.487 4.959 20.981 C7 RIV 7
RIV C8 C8 C 0 1 Y N N 7.333 5.468 19.984 7.333 5.468 19.984 C8 RIV 8
RIV C9 C9 C 0 1 Y N N 6.237 3.551 21.013 6.237 3.551 21.013 C9 RIV 9
RIV C10 C10 C 0 1 Y N N 7.918 4.619 19.048 7.918 4.619 19.048 C10 RIV 10
RIV C11 C11 C 0 1 Y N N 6.837 2.690 20.070 6.837 2.690 20.070 C11 RIV 11
RIV C12 C12 C 0 1 Y N N 7.682 3.222 19.078 7.682 3.222 19.078 C12 RIV 12
RIV O13 O13 O 0 1 N N N 6.583 2.613 16.630 6.583 2.613 16.630 O13 RIV 13
RIV N14 N14 N 0 1 N N N 5.906 5.863 21.947 5.906 5.863 21.947 N14 RIV 14
RIV C15 C15 C 0 1 N N N 5.040 5.543 22.995 5.040 5.543 22.995 C15 RIV 15
RIV C16 C16 C 0 1 N N N 6.146 7.326 22.000 6.146 7.326 22.000 C16 RIV 16
RIV O17 O17 O 0 1 N N N 4.690 6.614 23.757 4.690 6.614 23.757 O17 RIV 17
RIV C18 C18 C 0 1 N N S 5.213 7.787 23.134 5.213 7.787 23.134 C18 RIV 18
RIV O19 O19 O 0 1 N N N 4.634 4.419 23.228 4.634 4.419 23.228 O19 RIV 19
RIV C20 C20 C 0 1 N N N 5.924 8.721 24.155 5.924 8.721 24.155 C20 RIV 20
RIV N21 N21 N 0 1 N N N 7.078 8.136 24.932 7.078 8.136 24.932 N21 RIV 21
RIV C22 C22 C 0 1 N N N 8.402 8.558 24.672 8.402 8.558 24.672 C22 RIV 22
RIV S23 S23 S 0 1 Y N N 11.131 8.264 25.063 11.131 8.264 25.063 S23 RIV 23
RIV C24 C24 C 0 1 Y N N 11.805 7.503 26.288 11.805 7.503 26.288 C24 RIV 24
RIV C25 C25 C 0 1 Y N N 9.567 8.044 25.466 9.567 8.044 25.466 C25 RIV 25
RIV C26 C26 C 0 1 Y N N 10.794 7.011 27.130 10.794 7.011 27.130 C26 RIV 26
RIV C27 C27 C 0 1 Y N N 9.509 7.324 26.659 9.509 7.324 26.659 C27 RIV 27
RIV O28 O28 O 0 1 N N N 8.611 9.379 23.797 8.611 9.379 23.797 O28 RIV 28
RIV CL CL CL 0 0 N N N 13.544 7.302 26.531 13.544 7.302 26.531 CL RIV 29
RIV H11C H11C H 0 0 N N N 10.400 2.575 18.394 10.400 2.575 18.394 H11C RIV 30
RIV H12C H12C H 0 0 N N N 9.574 1.323 19.433 9.573 1.323 19.433 H12C RIV 31
RIV H31C H31C H 0 0 N N N 11.128 0.455 17.541 11.128 0.454 17.541 H31C RIV 32
RIV H32C H32C H 0 0 N N N 9.493 -0.256 17.652 9.493 -0.256 17.653 H32C RIV 33
RIV H61C H61C H 0 0 N N N 7.911 0.218 15.906 7.911 0.218 15.906 H61C RIV 34
RIV H62C H62C H 0 0 N N N 8.211 1.660 14.854 8.211 1.660 14.854 H62C RIV 35
RIV H8 H8 H 0 1 N N N 7.532 6.529 19.942 7.532 6.529 19.942 H8 RIV 36
RIV H9 H9 H 0 1 N N N 5.581 3.142 21.768 5.581 3.142 21.768 H9 RIV 37
RIV H10 H10 H 0 1 N N N 8.563 5.032 18.286 8.562 5.032 18.286 H10 RIV 38
RIV H11 H11 H 0 1 N N N 6.649 1.627 20.109 6.649 1.627 20.109 H11 RIV 39
RIV H161 H161 H 0 0 N N N 7.199 7.558 22.219 7.199 7.558 22.219 H161 RIV 40
RIV H162 H162 H 0 0 N N N 5.945 7.831 21.044 5.945 7.831 21.044 H162 RIV 41
RIV H18 H18 H 0 1 N N N 4.398 8.397 22.717 4.398 8.397 22.718 H18 RIV 42
RIV H201 H201 H 0 0 N N N 6.319 9.577 23.588 6.319 9.577 23.588 H201 RIV 43
RIV H202 H202 H 0 0 N N N 5.160 8.962 24.909 5.160 8.962 24.909 H202 RIV 44
RIV H21 H21 H 0 1 N N N 6.905 7.446 25.635 6.905 7.446 25.635 H21 RIV 45
RIV H26 H26 H 0 1 N N N 10.984 6.455 28.036 10.984 6.455 28.036 H26 RIV 46
RIV H27 H27 H 0 1 N N N 8.593 7.043 27.157 8.593 7.043 27.157 H27 RIV 47
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RIV C1 N2 SING N N 1
RIV C1 C3 SING N N 2
RIV N2 C4 SING N N 3
RIV N2 C12 SING N N 4
RIV C3 O5 SING N N 5
RIV C4 C6 SING N N 6
RIV C4 O13 DOUB N N 7
RIV O5 C6 SING N N 8
RIV C7 C8 SING Y N 9
RIV C7 C9 DOUB Y N 10
RIV C7 N14 SING N N 11
RIV C8 C10 DOUB Y N 12
RIV C9 C11 SING Y N 13
RIV C10 C12 SING Y N 14
RIV C11 C12 DOUB Y N 15
RIV N14 C15 SING N N 16
RIV N14 C16 SING N N 17
RIV C15 O17 SING N N 18
RIV C15 O19 DOUB N N 19
RIV C16 C18 SING N N 20
RIV O17 C18 SING N N 21
RIV C18 C20 SING N N 22
RIV C20 N21 SING N N 23
RIV N21 C22 SING N N 24
RIV C22 C25 SING N N 25
RIV C22 O28 DOUB N N 26
RIV S23 C24 SING Y N 27
RIV S23 C25 SING Y N 28
RIV C24 C26 DOUB Y N 29
RIV C24 CL SING N N 30
RIV C25 C27 DOUB Y N 31
RIV C26 C27 SING Y N 32
RIV C1 H11C SING N N 33
RIV C1 H12C SING N N 34
RIV C3 H31C SING N N 35
RIV C3 H32C SING N N 36
RIV C6 H61C SING N N 37
RIV C6 H62C SING N N 38
RIV C8 H8 SING N N 39
RIV C9 H9 SING N N 40
RIV C10 H10 SING N N 41
RIV C11 H11 SING N N 42
RIV C16 H161 SING N N 43
RIV C16 H162 SING N N 44
RIV C18 H18 SING N N 45
RIV C20 H201 SING N N 46
RIV C20 H202 SING N N 47
RIV N21 H21 SING N N 48
RIV C26 H26 SING N N 49
RIV C27 H27 SING N N 50
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RIV SMILES ACDLabs 10.04 "O=C(NCC3OC(=O)N(c2ccc(N1C(=O)COCC1)cc2)C3)c4sc(Cl)cc4"
RIV SMILES_CANONICAL CACTVS 3.341 "Clc1sc(cc1)C(=O)NC[C@H]2CN(C(=O)O2)c3ccc(cc3)N4CCOCC4=O"
RIV SMILES CACTVS 3.341 "Clc1sc(cc1)C(=O)NC[CH]2CN(C(=O)O2)c3ccc(cc3)N4CCOCC4=O"
RIV SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1N2CCOCC2=O)N3C[C@@H](OC3=O)CNC(=O)c4ccc(s4)Cl"
RIV SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1N2CCOCC2=O)N3CC(OC3=O)CNC(=O)c4ccc(s4)Cl"
RIV InChI InChI 1.03 "InChI=1S/C19H18ClN3O5S/c20-16-6-5-15(29-16)18(25)21-9-14-10-23(19(26)28-14)13-3-1-12(2-4-13)22-7-8-27-11-17(22)24/h1-6,14H,7-11H2,(H,21,25)/t14-/m0/s1"
RIV InChIKey InChI 1.03 KGFYHTZWPPHNLQ-AWEZNQCLSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RIV "SYSTEMATIC NAME" ACDLabs 10.04 "5-chloro-N-({(5S)-2-oxo-3-[4-(3-oxomorpholin-4-yl)phenyl]-1,3-oxazolidin-5-yl}methyl)thiophene-2-carboxamide"
RIV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-chloro-N-[[(5S)-2-oxo-3-[4-(3-oxomorpholin-4-yl)phenyl]-1,3-oxazolidin-5-yl]methyl]thiophene-2-carboxamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RIV "Create component" 2008-10-24 EBI
RIV "Modify aromatic_flag" 2011-06-04 RCSB
RIV "Modify descriptor" 2011-06-04 RCSB
RIV "Modify synonyms" 2012-06-12 EBI
RIV "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id RIV
_pdbx_chem_comp_synonyms.name Rivaroxaban
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##