data_RJQ # _chem_comp.id RJQ _chem_comp.name "(3~{S},7~{R},10~{R},13~{S})-4-[(3~{S},6~{R},8~{a}~{S})-1'-[(2~{S})-2-acetamido-3-(2-chlorophenyl)propanoyl]-5-oxidanylidene-spiro[1,2,3,8~{a}-tetrahydroindolizine-6,2'-pyrrolidine]-3-yl]carbonyl-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H41 Cl N6 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-30 _chem_comp.pdbx_modified_date 2020-11-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 677.190 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RJQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AKI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RJQ N N1 N 0 1 N N N -1.620 19.415 19.563 5.677 0.383 1.021 N RJQ 1 RJQ CA C1 C 0 1 N N S -0.172 19.336 19.199 4.821 0.713 -0.122 CA RJQ 2 RJQ C C2 C 0 1 N N N 0.546 20.606 19.630 3.480 1.186 0.375 C RJQ 3 RJQ O O1 O 0 1 N N N 0.022 21.706 19.484 3.119 0.914 1.501 O RJQ 4 RJQ CB C3 C 0 1 N N N 0.060 19.217 17.663 4.632 -0.531 -0.993 CB RJQ 5 RJQ CG C4 C 0 1 Y N N -0.793 18.087 17.096 5.950 -0.913 -1.616 CG RJQ 6 RJQ CD1 C5 C 0 1 Y N N -0.401 16.760 17.096 6.715 -1.920 -1.055 CD1 RJQ 7 RJQ CD2 C6 C 0 1 Y N N -2.028 18.453 16.597 6.392 -0.260 -2.751 CD2 RJQ 8 RJQ CE1 C7 C 0 1 Y N N -1.218 15.753 16.571 7.924 -2.270 -1.629 CE1 RJQ 9 RJQ CE2 C8 C 0 1 Y N N -2.845 17.462 16.098 7.598 -0.615 -3.327 CE2 RJQ 10 RJQ CZ C9 C 0 1 Y N N -2.472 16.128 16.103 8.368 -1.614 -2.761 CZ RJQ 11 RJQ CAK C10 C 0 1 N N N -2.272 18.346 20.080 5.305 -0.582 1.885 CAK RJQ 12 RJQ CAM C11 C 0 1 N N N -3.746 18.598 20.342 6.188 -0.925 3.057 CAM RJQ 13 RJQ CAQ C12 C 0 1 N N N 2.636 19.214 20.294 2.993 2.315 -1.815 CAQ RJQ 14 RJQ CAR C13 C 0 1 N N N 4.043 19.777 20.248 2.135 3.581 -2.065 CAR RJQ 15 RJQ CAS C14 C 0 1 N N N 3.866 20.990 21.101 0.833 3.232 -1.297 CAS RJQ 16 RJQ CAT C15 C 0 1 N N R 2.628 21.622 20.445 1.352 2.441 -0.079 CAT RJQ 17 RJQ CAU C16 C 0 1 N N N 2.887 22.236 19.231 0.414 1.297 0.205 CAU RJQ 18 RJQ CAX C17 C 0 1 N N N 1.995 22.517 21.325 1.462 3.358 1.104 CAX RJQ 19 RJQ CAY C18 C 0 1 N N N 2.208 23.889 21.280 0.535 3.467 2.011 CAY RJQ 20 RJQ CAZ C19 C 0 1 N N S 3.064 24.404 20.338 -0.733 2.667 1.939 CAZ RJQ 21 RJQ CBA C20 C 0 1 N N N 2.487 25.658 19.668 -1.182 2.231 3.353 CBA RJQ 22 RJQ CBB C21 C 0 1 N N N 3.516 25.751 18.619 -2.045 0.982 3.016 CBB RJQ 23 RJQ CBC C22 C 0 1 N N S 3.364 24.374 18.021 -1.276 0.342 1.838 CBC RJQ 24 RJQ CBD C23 C 0 1 N N N 4.690 24.054 17.391 -2.249 -0.197 0.822 CBD RJQ 25 RJQ CBG C24 C 0 1 N N S 6.075 24.165 15.314 -4.206 -1.687 0.347 CBG RJQ 26 RJQ CBH C25 C 0 1 N N N 7.258 24.609 15.910 -4.746 -0.814 -0.690 CBH RJQ 27 RJQ CBK C26 C 0 1 N N S 9.789 24.654 15.886 -6.510 0.187 -2.102 CBK RJQ 28 RJQ CBL C27 C 0 1 N N N 10.174 26.064 15.485 -6.451 1.453 -1.286 CBL RJQ 29 RJQ CBN C28 C 0 1 N N N 10.638 23.598 15.162 -7.973 -0.176 -2.391 CBN RJQ 30 RJQ CBO C29 C 0 1 N N N 10.077 23.733 13.784 -8.196 -1.532 -1.695 CBO RJQ 31 RJQ CBP C30 C 0 1 N N R 8.634 23.506 14.142 -6.761 -2.097 -1.523 CBP RJQ 32 RJQ CBQ C31 C 0 1 N N N 7.856 23.870 13.032 -6.785 -3.082 -0.418 CBQ RJQ 33 RJQ CBR C32 C 0 1 N N N 6.617 24.496 12.983 -6.211 -3.140 0.704 CBR RJQ 34 RJQ CBS C33 C 0 1 N N R 5.814 24.925 14.036 -5.240 -2.232 1.324 CBS RJQ 35 RJQ CBT C34 C 0 1 N N N 4.406 24.486 13.828 -4.346 -2.875 2.404 CBT RJQ 36 RJQ CBU C35 C 0 1 N N N 3.850 24.967 15.155 -3.139 -1.903 2.453 CBU RJQ 37 RJQ NAP N2 N 0 1 N N N 1.802 20.445 20.090 2.681 1.914 -0.431 NAP RJQ 38 RJQ NAW N3 N 0 1 N N N 3.121 23.523 19.194 -0.462 1.406 1.222 NAW RJQ 39 RJQ NBF N4 N 0 1 N N N 4.845 24.405 16.125 -3.117 -1.168 1.169 NBF RJQ 40 RJQ NBJ N5 N 0 1 N N N 8.446 24.346 15.390 -5.905 -0.928 -1.339 NBJ RJQ 41 RJQ NBV N6 N 0 1 N N N 11.214 26.504 16.155 -6.948 2.601 -1.787 NBV RJQ 42 RJQ OAL O2 O 0 1 N N N -1.805 17.223 20.315 4.260 -1.174 1.719 OAL RJQ 43 RJQ OAV O3 O 0 1 N N N 2.883 21.619 18.172 0.447 0.292 -0.473 OAV RJQ 44 RJQ OBE O4 O 0 1 N N N 5.581 23.560 18.081 -2.252 0.243 -0.309 OBE RJQ 45 RJQ OBI O5 O 0 1 N N N 7.203 25.324 16.918 -4.055 0.133 -1.000 OBI RJQ 46 RJQ OBM O6 O 0 1 N N N 9.547 26.714 14.651 -5.955 1.439 -0.179 OBM RJQ 47 RJQ CL1 CL1 CL 0 0 N N N 1.117 16.327 17.678 6.157 -2.744 0.367 CL1 RJQ 48 RJQ H H1 H 0 1 N N N -2.116 20.272 19.422 6.513 0.857 1.153 H RJQ 49 RJQ HA H2 H 0 1 N N N 0.289 18.470 19.697 5.290 1.501 -0.711 HA RJQ 50 RJQ HB1 H3 H 0 1 N N N 1.122 19.005 17.470 4.270 -1.354 -0.377 HB1 RJQ 51 RJQ HB2 H4 H 0 1 N N N -0.219 20.164 17.177 3.907 -0.318 -1.778 HB2 RJQ 52 RJQ HD2 H5 H 0 1 N N N -2.344 19.486 16.598 5.795 0.526 -3.189 HD2 RJQ 53 RJQ HE1 H6 H 0 1 N N N -0.888 14.726 16.531 8.522 -3.056 -1.191 HE1 RJQ 54 RJQ HE2 H7 H 0 1 N N N -3.807 17.734 15.690 7.945 -0.102 -4.212 HE2 RJQ 55 RJQ HZ H8 H 0 1 N N N -3.158 15.376 15.742 9.310 -1.890 -3.211 HZ RJQ 56 RJQ HAM H9 H 0 1 N N N -4.212 17.680 20.729 5.913 -0.308 3.912 HAM RJQ 57 RJQ HZL H10 H 0 1 N N N -3.854 19.404 21.082 6.060 -1.977 3.312 HZL RJQ 58 RJQ HZM H11 H 0 1 N N N -4.240 18.893 19.404 7.229 -0.739 2.794 HZM RJQ 59 RJQ HAQ H12 H 0 1 N N N 2.425 18.744 21.266 2.714 1.524 -2.511 HAQ RJQ 60 RJQ HZN H13 H 0 1 N N N 2.472 18.482 19.490 4.052 2.550 -1.912 HZN RJQ 61 RJQ HAR H14 H 0 1 N N N 4.776 19.079 20.678 2.612 4.465 -1.644 HAR RJQ 62 RJQ HZO H15 H 0 1 N N N 4.344 20.039 19.223 1.937 3.714 -3.129 HZO RJQ 63 RJQ HAS H16 H 0 1 N N N 3.676 20.723 22.151 0.318 4.138 -0.978 HAS RJQ 64 RJQ HZP H17 H 0 1 N N N 4.739 21.656 21.044 0.177 2.614 -1.911 HZP RJQ 65 RJQ HAX H18 H 0 1 N N N 1.316 22.122 22.066 2.354 3.956 1.207 HAX RJQ 66 RJQ HAY H19 H 0 1 N N N 1.706 24.543 21.978 0.682 4.150 2.836 HAY RJQ 67 RJQ HAZ H20 H 0 1 N N N 4.066 24.612 20.740 -1.519 3.234 1.441 HAZ RJQ 68 RJQ HZQ H21 H 0 1 N N N 2.479 26.532 20.336 -0.325 1.962 3.971 HZQ RJQ 69 RJQ HBA H22 H 0 1 N N N 1.478 25.498 19.262 -1.780 3.006 3.832 HBA RJQ 70 RJQ HZR H23 H 0 1 N N N 4.520 25.910 19.039 -2.086 0.301 3.866 HZR RJQ 71 RJQ HBB H24 H 0 1 N N N 3.293 26.544 17.891 -3.049 1.277 2.711 HBB RJQ 72 RJQ HBC H25 H 0 1 N N N 2.541 24.332 17.292 -0.634 -0.459 2.204 HBC RJQ 73 RJQ HBG H26 H 0 1 N N N 6.145 23.093 15.079 -3.807 -2.563 -0.164 HBG RJQ 74 RJQ HBK H27 H 0 1 N N N 9.858 24.524 16.976 -5.973 0.327 -3.039 HBK RJQ 75 RJQ HBN H28 H 0 1 N N N 10.478 22.590 15.573 -8.640 0.578 -1.972 HBN RJQ 76 RJQ HZV H29 H 0 1 N N N 11.710 23.841 15.194 -8.135 -0.269 -3.465 HZV RJQ 77 RJQ HBO H30 H 0 1 N N N 10.464 22.967 13.096 -8.671 -1.391 -0.724 HBO RJQ 78 RJQ HZU H31 H 0 1 N N N 10.251 24.731 13.356 -8.795 -2.192 -2.323 HZU RJQ 79 RJQ HBP H32 H 0 1 N N N 8.483 22.446 14.394 -6.470 -2.612 -2.439 HBP RJQ 80 RJQ HBQ H33 H 0 1 N N N 8.285 23.627 12.071 -7.430 -3.927 -0.612 HBQ RJQ 81 RJQ HBR H34 H 0 1 N N N 6.223 24.674 11.993 -6.478 -3.997 1.305 HBR RJQ 82 RJQ HBS H35 H 0 1 N N N 5.873 26.010 14.204 -5.773 -1.397 1.778 HBS RJQ 83 RJQ HZT H36 H 0 1 N N N 3.934 24.987 12.970 -4.859 -2.905 3.365 HZT RJQ 84 RJQ HBT H37 H 0 1 N N N 4.321 23.396 13.709 -4.028 -3.872 2.101 HBT RJQ 85 RJQ HZS H38 H 0 1 N N N 3.821 26.066 15.203 -3.260 -1.202 3.279 HZS RJQ 86 RJQ HBU H39 H 0 1 N N N 2.842 24.565 15.337 -2.214 -2.466 2.573 HBU RJQ 87 RJQ HZW H40 H 0 1 N N N 11.551 27.433 16.002 -7.344 2.613 -2.672 HZW RJQ 88 RJQ HBV H41 H 0 1 N N N 11.669 25.910 16.818 -6.909 3.416 -1.262 HBV RJQ 89 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RJQ CBR CBQ DOUB N N 1 RJQ CBR CBS SING N N 2 RJQ CBQ CBP SING N N 3 RJQ CBO CBP SING N N 4 RJQ CBO CBN SING N N 5 RJQ CBT CBS SING N N 6 RJQ CBT CBU SING N N 7 RJQ CBS CBG SING N N 8 RJQ CBP NBJ SING N N 9 RJQ OBM CBL DOUB N N 10 RJQ CBU NBF SING N N 11 RJQ CBN CBK SING N N 12 RJQ CBG CBH SING N N 13 RJQ CBG NBF SING N N 14 RJQ NBJ CBK SING N N 15 RJQ NBJ CBH SING N N 16 RJQ CBL CBK SING N N 17 RJQ CBL NBV SING N N 18 RJQ CBH OBI DOUB N N 19 RJQ CE2 CZ DOUB Y N 20 RJQ CE2 CD2 SING Y N 21 RJQ CZ CE1 SING Y N 22 RJQ NBF CBD SING N N 23 RJQ CE1 CD1 DOUB Y N 24 RJQ CD2 CG DOUB Y N 25 RJQ CG CD1 SING Y N 26 RJQ CG CB SING N N 27 RJQ CD1 CL1 SING N N 28 RJQ CBD CBC SING N N 29 RJQ CBD OBE DOUB N N 30 RJQ CB CA SING N N 31 RJQ CBC CBB SING N N 32 RJQ CBC NAW SING N N 33 RJQ OAV CAU DOUB N N 34 RJQ CBB CBA SING N N 35 RJQ NAW CAU SING N N 36 RJQ NAW CAZ SING N N 37 RJQ CA N SING N N 38 RJQ CA C SING N N 39 RJQ CAU CAT SING N N 40 RJQ O C DOUB N N 41 RJQ N CAK SING N N 42 RJQ C NAP SING N N 43 RJQ CBA CAZ SING N N 44 RJQ CAK OAL DOUB N N 45 RJQ CAK CAM SING N N 46 RJQ NAP CAQ SING N N 47 RJQ NAP CAT SING N N 48 RJQ CAR CAQ SING N N 49 RJQ CAR CAS SING N N 50 RJQ CAZ CAY SING N N 51 RJQ CAT CAS SING N N 52 RJQ CAT CAX SING N N 53 RJQ CAY CAX DOUB N N 54 RJQ N H SING N N 55 RJQ CA HA SING N N 56 RJQ CB HB1 SING N N 57 RJQ CB HB2 SING N N 58 RJQ CD2 HD2 SING N N 59 RJQ CE1 HE1 SING N N 60 RJQ CE2 HE2 SING N N 61 RJQ CZ HZ SING N N 62 RJQ CAM HAM SING N N 63 RJQ CAM HZL SING N N 64 RJQ CAM HZM SING N N 65 RJQ CAQ HAQ SING N N 66 RJQ CAQ HZN SING N N 67 RJQ CAR HAR SING N N 68 RJQ CAR HZO SING N N 69 RJQ CAS HAS SING N N 70 RJQ CAS HZP SING N N 71 RJQ CAX HAX SING N N 72 RJQ CAY HAY SING N N 73 RJQ CAZ HAZ SING N N 74 RJQ CBA HZQ SING N N 75 RJQ CBA HBA SING N N 76 RJQ CBB HZR SING N N 77 RJQ CBB HBB SING N N 78 RJQ CBC HBC SING N N 79 RJQ CBG HBG SING N N 80 RJQ CBK HBK SING N N 81 RJQ CBN HBN SING N N 82 RJQ CBN HZV SING N N 83 RJQ CBO HBO SING N N 84 RJQ CBO HZU SING N N 85 RJQ CBP HBP SING N N 86 RJQ CBQ HBQ SING N N 87 RJQ CBR HBR SING N N 88 RJQ CBS HBS SING N N 89 RJQ CBT HZT SING N N 90 RJQ CBT HBT SING N N 91 RJQ CBU HZS SING N N 92 RJQ CBU HBU SING N N 93 RJQ NBV HZW SING N N 94 RJQ NBV HBV SING N N 95 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RJQ InChI InChI 1.03 "InChI=1S/C35H41ClN6O6/c1-20(43)38-26(19-22-5-2-3-6-25(22)36)31(45)40-17-4-15-35(40)16-13-24-10-12-28(42(24)34(35)48)32(46)39-18-14-21-7-8-23-9-11-27(30(37)44)41(23)33(47)29(21)39/h2-3,5-8,13,16,21,23-24,26-29H,4,9-12,14-15,17-19H2,1H3,(H2,37,44)(H,38,43)/t21-,23-,24-,26-,27-,28-,29-,35+/m0/s1" RJQ InChIKey InChI 1.03 ITMFJTSTZSWDEK-QHVDBZGRSA-N RJQ SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H](Cc1ccccc1Cl)C(=O)N2CCC[C@]23C=C[C@@H]4CC[C@H](N4C3=O)C(=O)N5CC[C@@H]6C=C[C@H]7CC[C@H](N7C(=O)[C@@H]56)C(N)=O" RJQ SMILES CACTVS 3.385 "CC(=O)N[CH](Cc1ccccc1Cl)C(=O)N2CCC[C]23C=C[CH]4CC[CH](N4C3=O)C(=O)N5CC[CH]6C=C[CH]7CC[CH](N7C(=O)[CH]56)C(N)=O" RJQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H](Cc1ccccc1Cl)C(=O)N2CCC[C@]23C=C[C@@H]4CC[C@H](N4C3=O)C(=O)N5CC[C@H]6[C@H]5C(=O)N7[C@H](CC[C@H]7C(=O)N)C=C6" RJQ SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(Cc1ccccc1Cl)C(=O)N2CCCC23C=CC4CCC(N4C3=O)C(=O)N5CCC6C5C(=O)N7C(CCC7C(=O)N)C=C6" # _pdbx_chem_comp_identifier.comp_id RJQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S},7~{R},10~{R},13~{S})-4-[(3~{S},6~{R},8~{a}~{S})-1'-[(2~{S})-2-acetamido-3-(2-chlorophenyl)propanoyl]-5-oxidanylidene-spiro[1,2,3,8~{a}-tetrahydroindolizine-6,2'-pyrrolidine]-3-yl]carbonyl-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RJQ "Create component" 2020-09-30 PDBE RJQ "Initial release" 2020-11-25 RCSB ##