data_RKF # _chem_comp.id RKF _chem_comp.name "(11,12-difluorodipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H20 F2 N12 Ru" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2013-11-01 _chem_comp.pdbx_modified_date 2014-10-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 783.713 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RKF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 4MS5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RKF F2 F2 F 0 1 N N N 7.005 -19.883 -7.081 ? ? ? F2 RKF 1 RKF C17 C17 C 0 1 Y N N 6.310 -19.101 -6.248 ? ? ? C17 RKF 2 RKF C18 C18 C 0 1 Y N N 6.883 -17.900 -5.983 ? ? ? C18 RKF 3 RKF F1 F1 F 0 1 N N N 8.072 -17.679 -6.566 ? ? ? F1 RKF 4 RKF C14 C14 C 0 1 Y N N 6.240 -16.992 -5.146 ? ? ? C14 RKF 5 RKF C13 C13 C 0 1 Y N N 5.004 -17.330 -4.575 ? ? ? C13 RKF 6 RKF N4 N4 N 0 1 Y N N 4.396 -16.459 -3.742 ? ? ? N4 RKF 7 RKF C7 C7 C 0 1 Y N N 3.195 -16.749 -3.196 ? ? ? C7 RKF 8 RKF C8 C8 C 0 1 Y N N 2.578 -15.808 -2.365 ? ? ? C8 RKF 9 RKF C9 C9 C 0 1 Y N N 3.131 -14.557 -2.099 ? ? ? C9 RKF 10 RKF C11 C11 C 0 1 Y N N 2.429 -13.690 -1.275 ? ? ? C11 RKF 11 RKF C12 C12 C 0 1 Y N N 1.189 -14.067 -0.733 ? ? ? C12 RKF 12 RKF C10 C10 C 0 1 Y N N 1.343 -16.099 -1.792 ? ? ? C10 RKF 13 RKF N1 N1 N 0 1 Y N N 0.675 -15.282 -0.947 ? ? ? N1 RKF 14 RKF C16 C16 C 0 1 Y N N 5.076 -19.457 -5.689 ? ? ? C16 RKF 15 RKF C15 C15 C 0 1 Y N N 4.412 -18.559 -4.842 ? ? ? C15 RKF 16 RKF N3 N3 N 0 1 Y N N 3.218 -18.880 -4.275 ? ? ? N3 RKF 17 RKF C6 C6 C 0 1 Y N N 2.589 -17.984 -3.463 ? ? ? C6 RKF 18 RKF C5 C5 C 0 1 Y N N 1.357 -18.270 -2.879 ? ? ? C5 RKF 19 RKF C1 C1 C 0 1 Y N N 0.765 -17.314 -2.052 ? ? ? C1 RKF 20 RKF C4 C4 C 0 1 Y N N 0.690 -19.470 -3.079 ? ? ? C4 RKF 21 RKF C3 C3 C 0 1 Y N N -0.530 -19.667 -2.458 ? ? ? C3 RKF 22 RKF C2 C2 C 0 1 Y N N -1.061 -18.656 -1.663 ? ? ? C2 RKF 23 RKF N2 N2 N 0 1 Y N N -0.421 -17.466 -1.479 ? ? ? N2 RKF 24 RKF RU RU RU 2 0 N N N -0.952 -15.957 -0.598 ? ? ? RU RKF 25 RKF N12 N12 N 0 1 Y N N -2.579 -16.632 -0.310 ? ? ? N12 RKF 26 RKF C36 C36 C 0 1 Y N N -3.372 -16.308 -1.335 ? ? ? C36 RKF 27 RKF C38 C38 C 0 1 Y N N -3.116 -17.398 0.625 ? ? ? C38 RKF 28 RKF N5 N5 N 0 1 Y N N -0.360 -16.612 1.000 ? ? ? N5 RKF 29 RKF C20 C20 C 0 1 Y N N 0.230 -17.763 1.342 ? ? ? C20 RKF 30 RKF C21 C21 C 0 1 Y N N 0.611 -18.010 2.681 ? ? ? C21 RKF 31 RKF N6 N6 N 0 1 Y N N 0.402 -17.128 3.671 ? ? ? N6 RKF 32 RKF C19 C19 C 0 1 Y N N -0.573 -15.763 2.006 ? ? ? C19 RKF 33 RKF C22 C22 C 0 1 Y N N -0.218 -15.981 3.342 ? ? ? C22 RKF 34 RKF C23 C23 C 0 1 Y N N -0.504 -15.004 4.289 ? ? ? C23 RKF 35 RKF C24 C24 C 0 1 Y N N -1.114 -13.817 3.896 ? ? ? C24 RKF 36 RKF C25 C25 C 0 1 Y N N -1.468 -13.630 2.574 ? ? ? C25 RKF 37 RKF N7 N7 N 0 1 Y N N -2.058 -12.509 2.146 ? ? ? N7 RKF 38 RKF C27 C27 C 0 1 Y N N -2.331 -12.331 0.858 ? ? ? C27 RKF 39 RKF C28 C28 C 0 1 Y N N -2.033 -13.329 -0.059 ? ? ? C28 RKF 40 RKF C26 C26 C 0 1 Y N N -1.181 -14.593 1.623 ? ? ? C26 RKF 41 RKF N8 N8 N 0 1 Y N N -1.455 -14.472 0.309 ? ? ? N8 RKF 42 RKF N9 N9 N 0 1 Y N N -1.564 -15.292 -2.158 ? ? ? N9 RKF 43 RKF C29 C29 C 0 1 Y N N -2.838 -15.546 -2.327 ? ? ? C29 RKF 44 RKF C30 C30 C 0 1 Y N N -1.006 -14.546 -3.106 ? ? ? C30 RKF 45 RKF C31 C31 C 0 1 Y N N -1.747 -14.112 -4.214 ? ? ? C31 RKF 46 RKF N10 N10 N 0 1 Y N N -3.041 -14.411 -4.363 ? ? ? N10 RKF 47 RKF C32 C32 C 0 1 Y N N -3.579 -15.136 -3.410 ? ? ? C32 RKF 48 RKF C33 C33 C 0 1 Y N N -4.876 -15.474 -3.518 ? ? ? C33 RKF 49 RKF C34 C34 C 0 1 Y N N -5.437 -16.237 -2.519 ? ? ? C34 RKF 50 RKF C35 C35 C 0 1 Y N N -4.698 -16.660 -1.439 ? ? ? C35 RKF 51 RKF N11 N11 N 0 1 Y N N -5.240 -17.419 -0.492 ? ? ? N11 RKF 52 RKF C37 C37 C 0 1 Y N N -4.466 -17.783 0.531 ? ? ? C37 RKF 53 RKF H1 H1 H 0 1 N N N 6.690 -16.033 -4.937 ? ? ? H1 RKF 54 RKF H2 H2 H 0 1 N N N 4.082 -14.270 -2.524 ? ? ? H2 RKF 55 RKF H3 H3 H 0 1 N N N 2.839 -12.717 -1.048 ? ? ? H3 RKF 56 RKF H4 H4 H 0 1 N N N 0.639 -13.360 -0.130 ? ? ? H4 RKF 57 RKF H5 H5 H 0 1 N N N 4.638 -20.419 -5.910 ? ? ? H5 RKF 58 RKF H6 H6 H 0 1 N N N 1.116 -20.237 -3.709 ? ? ? H6 RKF 59 RKF H7 H7 H 0 1 N N N -1.065 -20.596 -2.589 ? ? ? H7 RKF 60 RKF H8 H8 H 0 1 N N N -2.011 -18.819 -1.176 ? ? ? H8 RKF 61 RKF H9 H9 H 0 1 N N N -2.518 -17.728 1.461 ? ? ? H9 RKF 62 RKF H10 H10 H 0 1 N N N 0.417 -18.512 0.587 ? ? ? H10 RKF 63 RKF H11 H11 H 0 1 N N N 1.091 -18.948 2.917 ? ? ? H11 RKF 64 RKF H12 H12 H 0 1 N N N -0.253 -15.166 5.327 ? ? ? H12 RKF 65 RKF H13 H13 H 0 1 N N N -1.310 -13.043 4.623 ? ? ? H13 RKF 66 RKF H14 H14 H 0 1 N N N -2.785 -11.409 0.525 ? ? ? H14 RKF 67 RKF H15 H15 H 0 1 N N N -2.276 -13.175 -1.100 ? ? ? H15 RKF 68 RKF H16 H16 H 0 1 N N N 0.035 -14.270 -3.021 ? ? ? H16 RKF 69 RKF H17 H17 H 0 1 N N N -1.257 -13.517 -4.971 ? ? ? H17 RKF 70 RKF H18 H18 H 0 1 N N N -5.463 -15.155 -4.367 ? ? ? H18 RKF 71 RKF H19 H19 H 0 1 N N N -6.480 -16.509 -2.585 ? ? ? H19 RKF 72 RKF H20 H20 H 0 1 N N N -4.890 -18.394 1.314 ? ? ? H20 RKF 73 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RKF F2 C17 SING N N 1 RKF F1 C18 SING N N 2 RKF C17 C18 DOUB Y N 3 RKF C17 C16 SING Y N 4 RKF C18 C14 SING Y N 5 RKF C16 C15 DOUB Y N 6 RKF C14 C13 DOUB Y N 7 RKF C15 C13 SING Y N 8 RKF C15 N3 SING Y N 9 RKF C13 N4 SING Y N 10 RKF N10 C31 DOUB Y N 11 RKF N10 C32 SING Y N 12 RKF N3 C6 DOUB Y N 13 RKF C31 C30 SING Y N 14 RKF N4 C7 DOUB Y N 15 RKF C33 C32 DOUB Y N 16 RKF C33 C34 SING Y N 17 RKF C6 C7 SING Y N 18 RKF C6 C5 SING Y N 19 RKF C32 C29 SING Y N 20 RKF C7 C8 SING Y N 21 RKF C30 N9 DOUB Y N 22 RKF C4 C5 DOUB Y N 23 RKF C4 C3 SING Y N 24 RKF C5 C1 SING Y N 25 RKF C34 C35 DOUB Y N 26 RKF C3 C2 DOUB Y N 27 RKF C8 C9 DOUB Y N 28 RKF C8 C10 SING Y N 29 RKF C29 N9 SING Y N 30 RKF C29 C36 DOUB Y N 31 RKF N9 RU SING N N 32 RKF C9 C11 SING Y N 33 RKF C1 C10 SING Y N 34 RKF C1 N2 DOUB Y N 35 RKF C10 N1 DOUB Y N 36 RKF C2 N2 SING Y N 37 RKF N2 RU SING N N 38 RKF C35 C36 SING Y N 39 RKF C35 N11 SING Y N 40 RKF C36 N12 SING Y N 41 RKF C11 C12 DOUB Y N 42 RKF N1 C12 SING Y N 43 RKF N1 RU SING N N 44 RKF RU N12 SING N N 45 RKF RU N8 SING N N 46 RKF RU N5 SING N N 47 RKF N11 C37 DOUB Y N 48 RKF N12 C38 DOUB Y N 49 RKF C28 N8 DOUB Y N 50 RKF C28 C27 SING Y N 51 RKF N8 C26 SING Y N 52 RKF C37 C38 SING Y N 53 RKF C27 N7 DOUB Y N 54 RKF N5 C20 DOUB Y N 55 RKF N5 C19 SING Y N 56 RKF C20 C21 SING Y N 57 RKF C26 C19 DOUB Y N 58 RKF C26 C25 SING Y N 59 RKF C19 C22 SING Y N 60 RKF N7 C25 SING Y N 61 RKF C25 C24 DOUB Y N 62 RKF C21 N6 DOUB Y N 63 RKF C22 N6 SING Y N 64 RKF C22 C23 DOUB Y N 65 RKF C24 C23 SING Y N 66 RKF C14 H1 SING N N 67 RKF C9 H2 SING N N 68 RKF C11 H3 SING N N 69 RKF C12 H4 SING N N 70 RKF C16 H5 SING N N 71 RKF C4 H6 SING N N 72 RKF C3 H7 SING N N 73 RKF C2 H8 SING N N 74 RKF C38 H9 SING N N 75 RKF C20 H10 SING N N 76 RKF C21 H11 SING N N 77 RKF C23 H12 SING N N 78 RKF C24 H13 SING N N 79 RKF C27 H14 SING N N 80 RKF C28 H15 SING N N 81 RKF C30 H16 SING N N 82 RKF C31 H17 SING N N 83 RKF C33 H18 SING N N 84 RKF C34 H19 SING N N 85 RKF C37 H20 SING N N 86 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RKF InChI InChI 1.03 "InChI=1S/C18H8F2N4.2C10H6N4.Ru/c19-11-7-13-14(8-12(11)20)24-18-10-4-2-6-22-16(10)15-9(17(18)23-13)3-1-5-21-15;2*1-2-8-10(14-6-4-12-8)9-7(1)11-3-5-13-9;/h1-8H;2*1-6H;/q;;;+2" RKF InChIKey InChI 1.03 DYCZIOAIFCZYGH-UHFFFAOYSA-N RKF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc2c3c4c1N=CC=[N]4[Ru+2]56([N]3=CC=N2)([N]7=C8C(=CC=C7)c9c(nc1cc(c(cc1n9)F)F)C1=CC=C[N]5=C18)[N]1=CC=Nc2c1c1c(cc2)N=CC=[N]61" RKF SMILES "OpenEye OEToolkits" 1.7.6 "c1cc2c3c4c1N=CC=[N]4[Ru+2]56([N]3=CC=N2)([N]7=C8C(=CC=C7)c9c(nc1cc(c(cc1n9)F)F)C1=CC=C[N]5=C18)[N]1=CC=Nc2c1c1c(cc2)N=CC=[N]61" # _pdbx_chem_comp_identifier.comp_id RKF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(11,12-difluorodipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RKF "Create component" 2013-11-01 RCSB RKF "Initial release" 2014-10-08 RCSB ##