data_RKO # _chem_comp.id RKO _chem_comp.name "2-(1~{H}-benzimidazol-2-ylsulfanyl)-~{N}-(5-chloranylpyridin-2-yl)ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H11 Cl N4 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-30 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 318.781 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RKO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BUC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RKO C1 C1 C 0 1 N N N -64.194 23.511 -4.474 -0.946 -0.050 0.133 C1 RKO 1 RKO C10 C2 C 0 1 Y N N -63.493 25.126 0.510 5.314 -0.601 -0.058 C10 RKO 2 RKO C11 C3 C 0 1 Y N N -62.650 25.775 1.404 6.688 -0.785 -0.101 C11 RKO 3 RKO C12 C4 C 0 1 Y N N -63.113 26.954 1.942 7.528 0.310 -0.103 C12 RKO 4 RKO C13 C5 C 0 1 Y N N -64.365 27.470 1.605 7.007 1.595 -0.063 C13 RKO 5 RKO C14 C6 C 0 1 Y N N -65.196 26.826 0.718 5.646 1.796 -0.019 C14 RKO 6 RKO C2 C7 C 0 1 Y N N -63.800 23.819 -6.898 -3.200 0.700 0.094 C2 RKO 7 RKO C3 C8 C 0 1 Y N N -63.790 24.693 -9.018 -4.909 -0.848 0.015 C3 RKO 8 RKO C4 C9 C 0 1 Y N N -62.448 24.437 -9.157 -5.862 0.149 -0.059 C4 RKO 9 RKO C5 C10 C 0 1 Y N N -61.760 23.830 -8.122 -5.456 1.478 -0.049 C5 RKO 10 RKO C6 C11 C 0 1 Y N N -62.443 23.515 -6.975 -4.103 1.755 0.029 C6 RKO 11 RKO C7 C12 C 0 1 N N N -65.282 23.168 -3.480 0.532 0.242 0.097 C7 RKO 12 RKO C8 C13 C 0 1 Y N N -64.487 23.797 -0.934 3.102 -0.694 0.004 C8 RKO 13 RKO C9 C14 C 0 1 Y N N -64.749 25.635 0.158 4.781 0.698 -0.017 C9 RKO 14 RKO N1 N1 N 0 1 N N N -64.595 23.548 -5.771 -1.833 0.965 0.173 N1 RKO 15 RKO N2 N2 N 0 1 Y N N -64.475 24.388 -7.901 -3.625 -0.553 0.088 N2 RKO 16 RKO N3 N3 N 0 1 Y N N -65.373 24.783 -0.754 3.429 0.575 0.020 N3 RKO 17 RKO N4 N4 N 0 1 Y N N -63.358 23.952 -0.200 4.230 -1.463 -0.038 N4 RKO 18 RKO O1 O1 O 0 1 N N N -63.044 23.721 -4.119 -1.338 -1.197 0.123 O1 RKO 19 RKO S1 S1 S 0 1 N N N -64.692 22.399 -1.967 1.453 -1.315 0.040 S1 RKO 20 RKO CL1 CL1 CL 0 0 N N N -61.634 24.863 -10.629 -7.548 -0.253 -0.155 CL1 RKO 21 RKO H7 H1 H 0 1 N N N -61.681 25.375 1.663 7.099 -1.783 -0.132 H7 RKO 22 RKO H8 H2 H 0 1 N N N -62.492 27.493 2.642 8.597 0.165 -0.137 H8 RKO 23 RKO H9 H3 H 0 1 N N N -64.690 28.398 2.052 7.675 2.444 -0.065 H9 RKO 24 RKO H10 H4 H 0 1 N N N -66.164 27.232 0.465 5.247 2.799 0.012 H10 RKO 25 RKO H2 H5 H 0 1 N N N -64.317 25.158 -9.838 -5.219 -1.883 0.013 H2 RKO 26 RKO H3 H6 H 0 1 N N N -60.707 23.609 -8.215 -6.181 2.277 -0.106 H3 RKO 27 RKO H4 H7 H 0 1 N N N -61.938 23.040 -6.147 -3.753 2.776 0.038 H4 RKO 28 RKO H5 H8 H 0 1 N N N -65.807 24.096 -3.211 0.763 0.834 -0.789 H5 RKO 29 RKO H6 H9 H 0 1 N N N -65.986 22.476 -3.966 0.814 0.799 0.990 H6 RKO 30 RKO H1 H10 H 0 1 N N N -65.562 23.362 -5.943 -1.520 1.879 0.256 H1 RKO 31 RKO H11 H12 H 0 1 N N N -62.574 23.331 -0.178 4.265 -2.432 -0.058 H11 RKO 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RKO CL1 C4 SING N N 1 RKO C4 C3 DOUB Y N 2 RKO C4 C5 SING Y N 3 RKO C3 N2 SING Y N 4 RKO C5 C6 DOUB Y N 5 RKO N2 C2 DOUB Y N 6 RKO C6 C2 SING Y N 7 RKO C2 N1 SING N N 8 RKO N1 C1 SING N N 9 RKO C1 O1 DOUB N N 10 RKO C1 C7 SING N N 11 RKO C7 S1 SING N N 12 RKO S1 C8 SING N N 13 RKO C8 N3 DOUB Y N 14 RKO C8 N4 SING Y N 15 RKO N3 C9 SING Y N 16 RKO N4 C10 SING Y N 17 RKO C9 C10 DOUB Y N 18 RKO C9 C14 SING Y N 19 RKO C10 C11 SING Y N 20 RKO C14 C13 DOUB Y N 21 RKO C11 C12 DOUB Y N 22 RKO C13 C12 SING Y N 23 RKO C11 H7 SING N N 24 RKO C12 H8 SING N N 25 RKO C13 H9 SING N N 26 RKO C14 H10 SING N N 27 RKO C3 H2 SING N N 28 RKO C5 H3 SING N N 29 RKO C6 H4 SING N N 30 RKO C7 H5 SING N N 31 RKO C7 H6 SING N N 32 RKO N1 H1 SING N N 33 RKO N4 H11 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RKO InChI InChI 1.06 "InChI=1S/C14H11ClN4OS/c15-9-5-6-12(16-7-9)19-13(20)8-21-14-17-10-3-1-2-4-11(10)18-14/h1-7H,8H2,(H,17,18)(H,16,19,20)" RKO InChIKey InChI 1.06 OOYJNUNOVRCHJZ-UHFFFAOYSA-N RKO SMILES_CANONICAL CACTVS 3.385 "Clc1ccc(NC(=O)CSc2[nH]c3ccccc3n2)nc1" RKO SMILES CACTVS 3.385 "Clc1ccc(NC(=O)CSc2[nH]c3ccccc3n2)nc1" RKO SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)[nH]c(n2)SCC(=O)Nc3ccc(cn3)Cl" RKO SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)[nH]c(n2)SCC(=O)Nc3ccc(cn3)Cl" # _pdbx_chem_comp_identifier.comp_id RKO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "2-(1~{H}-benzimidazol-2-ylsulfanyl)-~{N}-(5-chloranylpyridin-2-yl)ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RKO "Create component" 2022-11-30 PDBE RKO "Initial release" 2023-09-13 RCSB #