data_RKS # _chem_comp.id RKS _chem_comp.name "methyl N~6~-acetyl-N~2~-[(2,3-dihydroxyphenyl)carbonyl]-N~6~-hydroxy-D-lysyl-N~6~-acetyl-N~6~-hydroxy-L-lysinate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H36 N4 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2,3-catecholamide bis-lysine(hydroxamate) methyl ester" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-06-19 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 540.563 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RKS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3HWE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RKS C1 C1 C 0 1 Y N N 31.300 75.971 67.415 4.240 -1.606 0.252 C1 RKS 1 RKS N1 N1 N 0 1 N N N 30.411 77.333 69.264 2.360 -1.024 -1.201 N1 RKS 2 RKS O1 O1 O 0 1 N N N 29.423 77.373 66.866 3.969 -1.477 2.623 O1 RKS 3 RKS C2 C2 C 0 1 Y N N 30.356 76.453 66.503 4.751 -1.748 1.548 C2 RKS 4 RKS N4 N4 N 0 1 N N N 28.222 78.890 71.230 -1.257 -1.603 -1.123 N4 RKS 5 RKS O2 O2 O 0 1 N N N 29.394 76.480 64.332 6.568 -2.310 2.983 O2 RKS 6 RKS C4 C4 C 0 1 Y N N 30.333 75.998 65.193 6.065 -2.169 1.727 C4 RKS 7 RKS O3 O3 O 0 1 N N N 32.244 76.091 69.583 2.142 -0.915 1.007 O3 RKS 8 RKS C5 C5 C 0 1 Y N N 31.259 75.057 64.760 6.860 -2.445 0.627 C5 RKS 9 RKS N2 N2 N 0 1 N N N 25.534 76.829 66.985 -6.669 1.584 0.832 N2 RKS 10 RKS C6 C6 C 0 1 Y N N 32.212 74.575 65.652 6.354 -2.305 -0.654 C6 RKS 11 RKS C7 C7 C 0 1 Y N N 32.235 75.033 66.969 5.053 -1.894 -0.848 C7 RKS 12 RKS O4 O4 O 0 1 N N N 29.327 79.949 69.555 0.443 -2.306 0.117 O4 RKS 13 RKS C8 C8 C 0 1 N N N 31.349 76.473 68.847 2.849 -1.160 0.048 C8 RKS 14 RKS O5 O5 O 0 1 N N N 27.184 79.249 73.725 -2.829 -4.917 -0.766 O5 RKS 15 RKS O6 O6 O 0 1 N N N 26.315 77.936 66.653 -6.956 2.703 0.014 O6 RKS 16 RKS O7 O7 O 0 1 N N N 26.621 75.665 65.422 -7.413 0.023 2.222 O7 RKS 17 RKS O8 O8 O 0 1 N N N 26.435 81.379 73.236 -1.319 -4.028 -2.113 O8 RKS 18 RKS C9 C9 C 0 1 N N R 30.267 77.991 70.565 0.978 -0.581 -1.402 C9 RKS 19 RKS C10 C10 C 0 1 N N N 29.699 77.061 71.657 0.790 0.804 -0.779 C10 RKS 20 RKS C11 C11 C 0 1 N N N 29.235 79.063 70.391 0.037 -1.559 -0.748 C11 RKS 21 RKS C12 C12 C 0 1 N N S 27.026 79.681 71.403 -2.172 -2.553 -0.486 C12 RKS 22 RKS C13 C13 C 0 1 N N N 30.627 76.716 72.818 1.655 1.821 -1.527 C13 RKS 23 RKS C14 C14 C 0 1 N N N 29.805 76.355 74.055 1.467 3.206 -0.904 C14 RKS 24 RKS C15 C15 C 0 1 N N N 26.895 80.055 72.852 -2.075 -3.886 -1.181 C15 RKS 25 RKS C16 C16 C 0 1 N N N 25.891 78.753 70.977 -3.606 -2.027 -0.589 C16 RKS 26 RKS C17 C17 C 0 1 N N N 26.045 78.326 69.517 -3.734 -0.736 0.222 C17 RKS 27 RKS C18 C18 C 0 1 N N N 24.710 78.272 68.777 -5.168 -0.211 0.120 C18 RKS 28 RKS C19 C19 C 0 1 N N N 24.525 76.952 68.037 -5.297 1.081 0.930 C19 RKS 29 RKS C20 C20 C 0 1 N N N 25.767 75.713 66.293 -7.659 0.981 1.521 C20 RKS 30 RKS C21 C21 C 0 1 N N N 24.931 74.515 66.636 -9.070 1.499 1.420 C21 RKS 31 RKS HN1 HN1 H 0 1 N N N 29.707 77.559 68.590 2.924 -1.219 -1.965 HN1 RKS 32 RKS HO1 HO1 H 0 1 N N N 28.873 77.578 66.119 3.471 -2.239 2.949 HO1 RKS 33 RKS HN2 HN2 H 0 1 N N N 28.298 78.095 71.831 -1.582 -1.005 -1.814 HN2 RKS 34 RKS HO2 HO2 H 0 1 N N N 29.508 76.075 63.480 6.443 -3.192 3.360 HO2 RKS 35 RKS H5 H5 H 0 1 N N N 32.936 73.844 65.323 6.982 -2.522 -1.506 H5 RKS 36 RKS H6 H6 H 0 1 N N N 32.984 74.659 67.652 4.665 -1.786 -1.850 H6 RKS 37 RKS C22 C22 C 0 1 N N N 27.530 78.279 73.460 -2.684 -6.171 -1.482 C22 RKS 38 RKS HO7 HO7 H 0 1 N N N 26.916 77.702 65.956 -7.888 2.961 0.013 HO7 RKS 39 RKS HO8 HO8 H 0 1 N N N 31.263 78.341 70.873 0.765 -0.531 -2.470 HO8 RKS 40 RKS H12 H12 H 0 1 N N N 28.819 77.564 72.085 -0.258 1.095 -0.851 H12 RKS 41 RKS H13 H13 H 0 1 N N N 29.429 76.114 71.167 1.088 0.774 0.269 H13 RKS 42 RKS H13A H13A H 0 0 N N N 27.029 80.614 70.821 -1.903 -2.670 0.563 H13A RKS 43 RKS H17 H17 H 0 1 N N N 31.257 75.859 72.537 2.703 1.530 -1.455 H17 RKS 44 RKS H18 H18 H 0 1 N N N 31.263 77.584 73.045 1.357 1.851 -2.575 H18 RKS 45 RKS C23 C23 C 0 1 N N N 29.741 75.221 74.152 2.331 4.223 -1.651 C23 RKS 46 RKS H18A H18A H 0 0 N N N 30.288 76.773 74.951 0.419 3.497 -0.975 H18A RKS 47 RKS H19 H19 H 0 1 N N N 28.792 76.772 73.956 1.765 3.176 0.144 H19 RKS 48 RKS H19A H19A H 0 0 N N N 25.906 77.856 71.614 -3.845 -1.826 -1.633 H19A RKS 49 RKS H19B H19B H 0 0 N N N 24.934 79.283 71.094 -4.295 -2.774 -0.195 H19B RKS 50 RKS H30 H30 H 0 1 N N N 26.695 79.053 69.009 -3.495 -0.937 1.266 H30 RKS 51 RKS H30A H30A H 0 0 N N N 26.497 77.323 69.494 -3.045 0.010 -0.171 H30A RKS 52 RKS H31 H31 H 0 1 N N N 23.896 78.383 69.509 -5.407 -0.009 -0.925 H31 RKS 53 RKS H31A H31A H 0 0 N N N 24.679 79.093 68.046 -5.858 -0.957 0.513 H31A RKS 54 RKS H32 H32 H 0 1 N N N 23.522 76.924 67.586 -4.607 1.827 0.537 H32 RKS 55 RKS H32A H32A H 0 0 N N N 24.633 76.118 68.746 -5.057 0.879 1.974 H32A RKS 56 RKS H33 H33 H 0 1 N N N 25.224 73.668 65.998 -9.726 0.890 2.042 H33 RKS 57 RKS H33A H33A H 0 0 N N N 25.087 74.249 67.692 -9.103 2.533 1.762 H33A RKS 58 RKS H37 H37 H 0 1 N N N 23.869 74.749 66.470 -9.403 1.449 0.383 H37 RKS 59 RKS N3 N3 N 0 1 N N N 28.963 74.591 75.322 2.151 5.549 -1.055 N3 RKS 60 RKS C24 C24 C 0 1 N N N 29.653 74.290 76.586 2.727 5.839 0.129 C24 RKS 61 RKS O9 O9 O 0 1 N N N 27.532 74.290 75.177 1.372 6.525 -1.722 O9 RKS 62 RKS O10 O10 O 0 1 N N N 29.744 72.873 76.753 3.394 5.002 0.700 O10 RKS 63 RKS C25 C25 C 0 1 N N N 28.861 74.896 77.759 2.541 7.203 0.743 C25 RKS 64 RKS H311 H311 H 0 0 N N N 27.738 77.701 74.373 -2.943 -6.023 -2.530 H311 RKS 65 RKS H321 H321 H 0 0 N N N 26.759 77.764 72.868 -1.652 -6.514 -1.408 H321 RKS 66 RKS H331 H331 H 0 0 N N N 28.451 78.368 72.865 -3.347 -6.918 -1.046 H331 RKS 67 RKS H34 H34 H 0 1 N N N 29.253 74.863 73.233 3.379 3.931 -1.580 H34 RKS 68 RKS H35 H35 H 0 1 N N N 30.777 74.864 74.247 2.033 4.253 -2.699 H35 RKS 69 RKS H36 H36 H 0 1 N N N 27.205 73.908 75.983 1.311 7.368 -1.251 H36 RKS 70 RKS H371 H371 H 0 0 N N N 28.553 74.095 78.447 1.658 7.197 1.381 H371 RKS 71 RKS H38 H38 H 0 1 N N N 29.495 75.617 78.296 3.418 7.455 1.339 H38 RKS 72 RKS H39 H39 H 0 1 N N N 27.969 75.410 77.372 2.414 7.943 -0.047 H39 RKS 73 RKS H4 H4 H 0 1 N N N 31.239 74.703 63.740 7.879 -2.772 0.770 H4 RKS 74 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RKS C1 C8 SING N N 1 RKS N1 C9 SING N N 2 RKS N1 HN1 SING N N 3 RKS O1 HO1 SING N N 4 RKS C2 C1 SING Y N 5 RKS C2 O1 SING N N 6 RKS N4 C12 SING N N 7 RKS N4 HN2 SING N N 8 RKS O2 C4 SING N N 9 RKS O2 HO2 SING N N 10 RKS C4 C2 DOUB Y N 11 RKS C5 C4 SING Y N 12 RKS C5 C6 DOUB Y N 13 RKS N2 C19 SING N N 14 RKS C6 C7 SING Y N 15 RKS C6 H5 SING N N 16 RKS C7 C1 DOUB Y N 17 RKS C7 H6 SING N N 18 RKS O4 C11 DOUB N N 19 RKS C8 N1 SING N N 20 RKS C8 O3 DOUB N N 21 RKS O5 C22 SING N N 22 RKS O6 N2 SING N N 23 RKS O6 HO7 SING N N 24 RKS O7 C20 DOUB N N 25 RKS C9 C10 SING N N 26 RKS C9 HO8 SING N N 27 RKS C10 C13 SING N N 28 RKS C10 H12 SING N N 29 RKS C10 H13 SING N N 30 RKS C11 N4 SING N N 31 RKS C11 C9 SING N N 32 RKS C12 C15 SING N N 33 RKS C12 H13A SING N N 34 RKS C13 C14 SING N N 35 RKS C13 H17 SING N N 36 RKS C13 H18 SING N N 37 RKS C14 C23 SING N N 38 RKS C14 H18A SING N N 39 RKS C14 H19 SING N N 40 RKS C15 O5 SING N N 41 RKS C15 O8 DOUB N N 42 RKS C16 C12 SING N N 43 RKS C16 H19A SING N N 44 RKS C16 H19B SING N N 45 RKS C17 C16 SING N N 46 RKS C17 H30 SING N N 47 RKS C17 H30A SING N N 48 RKS C18 C17 SING N N 49 RKS C18 H31 SING N N 50 RKS C18 H31A SING N N 51 RKS C19 C18 SING N N 52 RKS C19 H32 SING N N 53 RKS C19 H32A SING N N 54 RKS C20 N2 SING N N 55 RKS C20 C21 SING N N 56 RKS C21 H33 SING N N 57 RKS C21 H33A SING N N 58 RKS C21 H37 SING N N 59 RKS C22 H311 SING N N 60 RKS C22 H321 SING N N 61 RKS C22 H331 SING N N 62 RKS C23 N3 SING N N 63 RKS C23 H34 SING N N 64 RKS C23 H35 SING N N 65 RKS N3 C24 SING N N 66 RKS N3 O9 SING N N 67 RKS C24 O10 DOUB N N 68 RKS C24 C25 SING N N 69 RKS O9 H36 SING N N 70 RKS C25 H371 SING N N 71 RKS C25 H38 SING N N 72 RKS C25 H39 SING N N 73 RKS C5 H4 SING N N 74 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RKS SMILES ACDLabs 11.02 "O=C(OC)C(NC(=O)C(NC(=O)c1cccc(O)c1O)CCCCN(O)C(=O)C)CCCCN(O)C(=O)C" RKS SMILES_CANONICAL CACTVS 3.352 "COC(=O)[C@H](CCCCN(O)C(C)=O)NC(=O)[C@@H](CCCCN(O)C(C)=O)NC(=O)c1cccc(O)c1O" RKS SMILES CACTVS 3.352 "COC(=O)[CH](CCCCN(O)C(C)=O)NC(=O)[CH](CCCCN(O)C(C)=O)NC(=O)c1cccc(O)c1O" RKS SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC(=O)N(CCCC[C@H](C(=O)N[C@@H](CCCCN(C(=O)C)O)C(=O)OC)NC(=O)c1cccc(c1O)O)O" RKS SMILES "OpenEye OEToolkits" 1.7.0 "CC(=O)N(CCCCC(C(=O)NC(CCCCN(C(=O)C)O)C(=O)OC)NC(=O)c1cccc(c1O)O)O" RKS InChI InChI 1.03 "InChI=1S/C24H36N4O10/c1-15(29)27(36)13-6-4-10-18(25-22(33)17-9-8-12-20(31)21(17)32)23(34)26-19(24(35)38-3)11-5-7-14-28(37)16(2)30/h8-9,12,18-19,31-32,36-37H,4-7,10-11,13-14H2,1-3H3,(H,25,33)(H,26,34)/t18-,19+/m1/s1" RKS InChIKey InChI 1.03 WXZHDJXCVBLPHY-MOPGFXCFSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RKS "SYSTEMATIC NAME" ACDLabs 11.02 "methyl N~6~-acetyl-N~2~-[(2,3-dihydroxyphenyl)carbonyl]-N~6~-hydroxy-D-lysyl-N~6~-acetyl-N~6~-hydroxy-L-lysinate" RKS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "methyl (2S)-2-[[(2R)-2-[(2,3-dihydroxyphenyl)carbonylamino]-6-[ethanoyl(hydroxy)amino]hexanoyl]amino]-6-[ethanoyl(hydroxy)amino]hexanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RKS "Create component" 2009-06-19 RCSB RKS "Modify aromatic_flag" 2011-06-04 RCSB RKS "Modify descriptor" 2011-06-04 RCSB RKS "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RKS _pdbx_chem_comp_synonyms.name "2,3-catecholamide bis-lysine(hydroxamate) methyl ester" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##