data_RLT
#
_chem_comp.id RLT
_chem_comp.name
;N-(4-fluorobenzyl)-5-hydroxy-1-methyl-2-(1-methyl-1-{[(5-methyl-1,3,4-oxadiazol-2-yl)carbonyl]amino}ethyl)-6-oxo-1,6-di
hydropyrimidine-4-carboxamide
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAD
_chem_comp.formula "C20 H21 F N6 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "RALTEGRAVIR, MK0518"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-12-28
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 444.416
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RLT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3L2T
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RLT CAA CAA C 0 1 N N N -41.777 23.422 -19.563 7.458 3.450 -1.241 CAA RLT 1
RLT CAB CAB C 0 1 N N N -36.627 27.309 -19.717 2.855 -2.595 0.918 CAB RLT 2
RLT CAC CAC C 0 1 N N N -38.253 29.880 -23.082 1.979 -0.485 2.630 CAC RLT 3
RLT CAD CAD C 0 1 N N N -36.082 28.644 -23.206 0.513 1.022 1.281 CAD RLT 4
RLT OAE OAE O 0 1 N N N -36.294 33.708 -18.628 -3.248 -3.017 -1.022 OAE RLT 5
RLT OAF OAF O 0 1 N N N -39.691 28.529 -20.670 3.174 1.885 1.665 OAF RLT 6
RLT OAG OAG O 0 1 N N N -35.958 28.788 -17.548 1.433 -4.672 -0.113 OAG RLT 7
RLT OAH OAH O 0 1 N N N -35.766 31.244 -17.222 -1.258 -4.557 -0.880 OAH RLT 8
RLT FAI FAI F 0 1 N N N -40.957 38.250 -20.731 -6.167 4.586 0.336 FAI RLT 9
RLT CAJ CAJ C 0 1 Y N N -39.680 36.769 -22.081 -5.273 2.986 -1.166 CAJ RLT 10
RLT CAK CAK C 0 1 Y N N -38.918 37.358 -19.850 -5.933 2.338 1.046 CAK RLT 11
RLT CAL CAL C 0 1 Y N N -38.539 35.966 -22.213 -4.892 1.685 -1.432 CAL RLT 12
RLT CAM CAM C 0 1 Y N N -37.785 36.554 -19.995 -5.551 1.037 0.778 CAM RLT 13
RLT CAN CAN C 0 1 N N N -36.393 34.975 -21.393 -4.615 -0.708 -0.753 CAN RLT 14
RLT NAO NAO N 0 1 Y N N -39.537 23.984 -20.630 5.955 1.510 -1.777 NAO RLT 15
RLT NAP NAP N 0 1 Y N N -38.895 24.980 -20.999 4.913 0.936 -1.287 NAP RLT 16
RLT NAQ NAQ N 0 1 N N N -36.786 30.908 -20.800 -0.488 -1.245 0.319 NAQ RLT 17
RLT NAR NAR N 0 1 N N N -36.426 33.574 -20.939 -3.208 -0.890 -0.387 NAR RLT 18
RLT NAS NAS N 0 1 N N N -37.938 27.655 -21.899 2.615 0.175 0.362 NAS RLT 19
RLT OAT OAT O 0 1 Y N N -40.791 25.813 -20.194 5.420 2.576 -0.003 OAT RLT 20
RLT CAU CAU C 0 1 N N N -36.379 33.067 -19.671 -2.615 -2.088 -0.561 CAU RLT 21
RLT CAV CAV C 0 1 N N N -39.070 27.560 -21.113 3.405 1.221 0.673 CAV RLT 22
RLT CAW CAW C 0 1 Y N N -40.704 24.415 -20.129 6.294 2.519 -1.017 CAW RLT 23
RLT CAX CAX C 0 1 Y N N -39.863 37.466 -20.887 -5.794 3.314 0.075 CAX RLT 24
RLT CAY CAY C 0 1 Y N N -37.605 35.855 -21.194 -5.031 0.711 -0.461 CAY RLT 25
RLT CAZ CAZ C 0 1 N N N -36.138 30.788 -18.481 -0.579 -3.500 -0.369 CAZ RLT 26
RLT CBA CBA C 0 1 Y N N -39.588 26.122 -20.768 4.550 1.562 -0.191 CBA RLT 27
RLT CBB CBB C 0 1 N N N -36.436 31.532 -19.646 -1.194 -2.271 -0.191 CBB RLT 28
RLT CBC CBC C 0 1 N N N -36.882 29.575 -20.949 0.762 -1.364 0.656 CBC RLT 29
RLT CBD CBD C 0 1 N N N -36.221 29.422 -18.576 0.833 -3.619 0.016 CBD RLT 30
RLT NBE NBE N 0 1 N N N -36.588 28.791 -19.791 1.447 -2.526 0.520 NBE RLT 31
RLT CBF CBF C 0 1 N N N -37.296 28.946 -22.329 1.477 -0.164 1.221 CBF RLT 32
RLT HAA HAA H 0 1 N N N -41.407 22.390 -19.654 7.136 4.295 -1.850 HAA RLT 33
RLT HAAA HAAA H 0 0 N N N -41.966 23.651 -18.504 7.824 3.812 -0.281 HAAA RLT 34
RLT HAAB HAAB H 0 0 N N N -42.711 23.528 -20.134 8.257 2.915 -1.756 HAAB RLT 35
RLT HAB HAB H 0 1 N N N -36.355 26.985 -18.702 2.922 -2.890 1.965 HAB RLT 36
RLT HABA HABA H 0 0 N N N -37.642 26.957 -19.954 3.371 -3.329 0.299 HABA RLT 37
RLT HABB HABB H 0 0 N N N -35.914 26.887 -20.440 3.319 -1.618 0.785 HABB RLT 38
RLT HAC HAC H 0 1 N N N -39.127 30.097 -22.450 1.133 -0.737 3.269 HAC RLT 39
RLT HACA HACA H 0 0 N N N -37.734 30.819 -23.324 2.666 -1.330 2.587 HACA RLT 40
RLT HACB HACB H 0 0 N N N -38.584 29.394 -24.011 2.497 0.383 3.038 HACB RLT 41
RLT HAD HAD H 0 1 N N N -35.396 27.975 -22.666 1.030 1.891 1.689 HAD RLT 42
RLT HADA HADA H 0 0 N N N -36.413 28.157 -24.135 0.155 1.251 0.277 HADA RLT 43
RLT HADB HADB H 0 0 N N N -35.562 29.583 -23.448 -0.334 0.770 1.920 HADB RLT 44
RLT HOAH HOAH H 0 0 N N N -35.634 30.503 -16.643 -0.730 -5.363 -0.959 HOAH RLT 45
RLT HAJ HAJ H 0 1 N N N -40.399 36.846 -22.883 -5.161 3.748 -1.923 HAJ RLT 46
RLT HAK HAK H 0 1 N N N -39.071 37.904 -18.931 -6.339 2.592 2.014 HAK RLT 47
RLT HAL HAL H 0 1 N N N -38.383 35.420 -23.132 -4.486 1.428 -2.400 HAL RLT 48
RLT HAM HAM H 0 1 N N N -37.062 36.473 -19.197 -5.659 0.275 1.536 HAM RLT 49
RLT HAN HAN H 0 1 N N N -35.571 35.456 -20.843 -4.743 -0.913 -1.816 HAN RLT 50
RLT HANA HANA H 0 0 N N N -36.213 34.942 -22.478 -5.232 -1.394 -0.173 HANA RLT 51
RLT HNAR HNAR H 0 0 N N N -36.493 32.892 -21.668 -2.703 -0.148 -0.019 HNAR RLT 52
RLT HNAS HNAS H 0 0 N N N -37.514 26.803 -22.205 2.799 -0.354 -0.430 HNAS RLT 53
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RLT CAA CAW SING N N 1
RLT CAB NBE SING N N 2
RLT CAC CBF SING N N 3
RLT CAD CBF SING N N 4
RLT OAE CAU DOUB N N 5
RLT OAF CAV DOUB N N 6
RLT OAG CBD DOUB N N 7
RLT OAH CAZ SING N N 8
RLT FAI CAX SING N N 9
RLT CAJ CAL DOUB Y N 10
RLT CAJ CAX SING Y N 11
RLT CAK CAM SING Y N 12
RLT CAK CAX DOUB Y N 13
RLT CAL CAY SING Y N 14
RLT CAM CAY DOUB Y N 15
RLT CAN NAR SING N N 16
RLT CAN CAY SING N N 17
RLT NAO NAP SING Y N 18
RLT NAO CAW DOUB Y N 19
RLT NAP CBA DOUB Y N 20
RLT NAQ CBB SING N N 21
RLT NAQ CBC DOUB N N 22
RLT NAR CAU SING N N 23
RLT NAS CAV SING N N 24
RLT NAS CBF SING N N 25
RLT OAT CAW SING Y N 26
RLT OAT CBA SING Y N 27
RLT CAU CBB SING N N 28
RLT CAV CBA SING N N 29
RLT CAZ CBB DOUB N N 30
RLT CAZ CBD SING N N 31
RLT CBC NBE SING N N 32
RLT CBC CBF SING N N 33
RLT CBD NBE SING N N 34
RLT CAA HAA SING N N 35
RLT CAA HAAA SING N N 36
RLT CAA HAAB SING N N 37
RLT CAB HAB SING N N 38
RLT CAB HABA SING N N 39
RLT CAB HABB SING N N 40
RLT CAC HAC SING N N 41
RLT CAC HACA SING N N 42
RLT CAC HACB SING N N 43
RLT CAD HAD SING N N 44
RLT CAD HADA SING N N 45
RLT CAD HADB SING N N 46
RLT OAH HOAH SING N N 47
RLT CAJ HAJ SING N N 48
RLT CAK HAK SING N N 49
RLT CAL HAL SING N N 50
RLT CAM HAM SING N N 51
RLT CAN HAN SING N N 52
RLT CAN HANA SING N N 53
RLT NAR HNAR SING N N 54
RLT NAS HNAS SING N N 55
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RLT SMILES_CANONICAL CACTVS 3.352 "CN1C(=O)C(=C(N=C1C(C)(C)NC(=O)c2oc(C)nn2)C(=O)NCc3ccc(F)cc3)O"
RLT SMILES CACTVS 3.352 "CN1C(=O)C(=C(N=C1C(C)(C)NC(=O)c2oc(C)nn2)C(=O)NCc3ccc(F)cc3)O"
RLT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1nnc(o1)C(=O)NC(C)(C)C2=NC(=C(C(=O)N2C)O)C(=O)NCc3ccc(cc3)F"
RLT SMILES "OpenEye OEToolkits" 1.7.0 "Cc1nnc(o1)C(=O)NC(C)(C)C2=NC(=C(C(=O)N2C)O)C(=O)NCc3ccc(cc3)F"
RLT InChI InChI 1.03 "InChI=1S/C20H21FN6O5/c1-10-25-26-17(32-10)16(30)24-20(2,3)19-23-13(14(28)18(31)27(19)4)15(29)22-9-11-5-7-12(21)8-6-11/h5-8,28H,9H2,1-4H3,(H,22,29)(H,24,30)"
RLT InChIKey InChI 1.03 CZFFBEXEKNGXKS-UHFFFAOYSA-N
#
_pdbx_chem_comp_identifier.comp_id RLT
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.6.1
_pdbx_chem_comp_identifier.identifier "N-[2-[4-[(4-fluorophenyl)methylcarbamoyl]-5-hydroxy-1-methyl-6-oxo-pyrimidin-2-yl]propan-2-yl]-5-methyl-1,3,4-oxadiazole-2-carboxamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RLT "Create component" 2009-12-28 PDBJ
RLT "Modify aromatic_flag" 2011-06-04 RCSB
RLT "Modify descriptor" 2011-06-04 RCSB
RLT "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id RLT
_pdbx_chem_comp_synonyms.name "RALTEGRAVIR, MK0518"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##