data_RMP # _chem_comp.id RMP _chem_comp.name "2'-DEOXY-ADENOSINE-5'-RP-MONOMETHYLPHOSPHONATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 N5 O5 P" _chem_comp.mon_nstd_parent_comp_id DA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-10-09 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 329.249 _chem_comp.one_letter_code A _chem_comp.three_letter_code RMP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details "OpenEye OEToolkits" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RMP P P P 0 1 N N S -10.665 1.432 -2.865 3.084 5.145 -3.460 P RMP 1 RMP CMP CMP C 0 1 N N N -12.164 2.349 -3.080 2.991 4.815 -5.208 CMP RMP 2 RMP OP1 O1P O 0 1 N N N -10.746 0.382 -3.900 1.950 5.981 -2.942 OP1 RMP 3 RMP "O5'" O5* O 0 1 N N N -9.308 2.220 -3.081 3.235 3.702 -2.745 "O5'" RMP 4 RMP "C5'" C5* C 0 1 N N N -8.954 3.292 -2.271 2.240 2.706 -2.896 "C5'" RMP 5 RMP "C4'" C4* C 0 1 N N R -7.624 3.888 -2.642 2.219 1.846 -1.646 "C4'" RMP 6 RMP "O4'" O4* O 0 1 N N N -6.624 2.922 -2.395 1.879 2.654 -0.508 "O4'" RMP 7 RMP "C1'" C1* C 0 1 N N R -5.678 2.910 -3.436 1.171 1.827 0.433 "C1'" RMP 8 RMP N9 N9 N 0 1 Y N N -5.012 1.595 -3.539 -0.077 2.488 0.819 N9 RMP 9 RMP C8 C8 C 0 1 Y N N -5.566 0.349 -3.622 -0.847 3.294 0.021 C8 RMP 10 RMP N7 N7 N 0 1 Y N N -4.713 -0.638 -3.667 -1.913 3.746 0.647 N7 RMP 11 RMP C5 C5 C 0 1 Y N N -3.493 0.014 -3.644 -1.833 3.210 1.908 C5 RMP 12 RMP C6 C6 C 0 1 Y N N -2.153 -0.432 -3.618 -2.655 3.315 3.026 C6 RMP 13 RMP N6 N6 N 0 1 N N N -1.787 -1.703 -3.677 -3.826 4.091 2.985 N6 RMP 14 RMP N1 N1 N 0 1 Y N N -1.162 0.460 -3.552 -2.313 2.657 4.159 N1 RMP 15 RMP C2 C2 C 0 1 Y N N -1.472 1.742 -3.510 -1.173 1.925 4.138 C2 RMP 16 RMP N3 N3 N 0 1 Y N N -2.678 2.302 -3.508 -0.299 1.747 3.123 N3 RMP 17 RMP C4 C4 C 0 1 Y N N -3.662 1.372 -3.584 -0.699 2.425 2.036 C4 RMP 18 RMP "C3'" C3* C 0 1 N N S -7.470 4.320 -4.105 1.177 0.741 -1.684 "C3'" RMP 19 RMP "C2'" C2* C 0 1 N N N -6.480 3.287 -4.659 0.970 0.461 -0.212 "C2'" RMP 20 RMP "O3'" O3* O 0 1 N N N -6.948 5.633 -4.096 1.636 -0.408 -2.366 "O3'" RMP 21 RMP OP3 O3P O 0 1 N Y N ? ? ? 4.547 5.805 -3.261 OP3 RMP 22 RMP HMP1 1HMP H 0 0 N N N -12.622 2.539 -2.098 3.311 5.694 -5.773 HMP1 RMP 23 RMP HMP2 2HMP H 0 0 N N N -11.940 3.307 -3.572 3.639 3.974 -5.466 HMP2 RMP 24 RMP HMP3 3HMP H 0 0 N N N -12.861 1.770 -3.704 1.964 4.569 -5.489 HMP3 RMP 25 RMP "H5'" 1H5* H 0 1 N N N -8.894 2.965 -1.252 1.270 3.186 -3.037 "H5'" RMP 26 RMP "H5''" 2H5* H 0 0 N N N -9.697 4.066 -2.356 2.475 2.094 -3.768 "H5''" RMP 27 RMP "H4'" H4* H 0 1 N N N -7.475 4.741 -1.989 3.224 1.436 -1.487 "H4'" RMP 28 RMP "H1'" H1* H 0 1 N N N -4.920 3.682 -3.261 1.753 1.756 1.357 "H1'" RMP 29 RMP H8 H8 H 0 1 N N N -6.633 0.220 -3.611 -0.579 3.514 -1.004 H8 RMP 30 RMP H61 1H6 H 0 1 N N N -0.825 -1.950 -3.597 -4.674 3.685 2.637 H61 RMP 31 RMP H62 2H6 H 0 1 N N N -2.500 -2.392 -3.713 -3.779 5.065 3.215 H62 RMP 32 RMP H2 H2 H 0 1 N N N -0.637 2.413 -3.471 -0.929 1.412 5.062 H2 RMP 33 RMP "H3'" H3* H 0 1 N N N -8.411 4.280 -4.616 0.241 1.086 -2.140 "H3'" RMP 34 RMP "H2'" 1H2* H 0 1 N N N -7.020 2.429 -4.992 -0.002 0.004 0.001 "H2'" RMP 35 RMP "H2''" 2H2* H 0 0 N N N -5.860 3.666 -5.438 1.736 -0.240 0.147 "H2''" RMP 36 RMP "HO3'" H3T H 0 0 N Y N -6.831 5.922 -3.198 1.809 -0.135 -3.280 "HO3'" RMP 37 RMP HOP3 3HOP H 0 0 N N N ? ? ? 4.626 6.639 -2.750 HOP3 RMP 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RMP P CMP SING N N 1 RMP P OP1 DOUB N N 2 RMP P "O5'" SING N N 3 RMP P OP3 SING N N 4 RMP CMP HMP1 SING N N 5 RMP CMP HMP2 SING N N 6 RMP CMP HMP3 SING N N 7 RMP "O5'" "C5'" SING N N 8 RMP "C5'" "C4'" SING N N 9 RMP "C5'" "H5'" SING N N 10 RMP "C5'" "H5''" SING N N 11 RMP "C4'" "O4'" SING N N 12 RMP "C4'" "C3'" SING N N 13 RMP "C4'" "H4'" SING N N 14 RMP "O4'" "C1'" SING N N 15 RMP "C1'" N9 SING N N 16 RMP "C1'" "C2'" SING N N 17 RMP "C1'" "H1'" SING N N 18 RMP N9 C8 SING Y N 19 RMP N9 C4 SING Y N 20 RMP C8 N7 DOUB Y N 21 RMP C8 H8 SING N N 22 RMP N7 C5 SING Y N 23 RMP C5 C6 DOUB Y N 24 RMP C5 C4 SING Y N 25 RMP C6 N6 SING N N 26 RMP C6 N1 SING Y N 27 RMP N6 H61 SING N N 28 RMP N6 H62 SING N N 29 RMP N1 C2 DOUB Y N 30 RMP C2 N3 SING Y N 31 RMP C2 H2 SING N N 32 RMP N3 C4 DOUB Y N 33 RMP "C3'" "C2'" SING N N 34 RMP "C3'" "O3'" SING N N 35 RMP "C3'" "H3'" SING N N 36 RMP "C2'" "H2'" SING N N 37 RMP "C2'" "H2''" SING N N 38 RMP "O3'" "HO3'" SING N N 39 RMP OP3 HOP3 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RMP SMILES ACDLabs 10.04 "O=P(O)(OCC3OC(n2cnc1c(ncnc12)N)CC3O)C" RMP SMILES_CANONICAL CACTVS 3.341 "C[P@@](O)(=O)OC[C@H]1O[C@H](C[C@@H]1O)n2cnc3c(N)ncnc23" RMP SMILES CACTVS 3.341 "C[P](O)(=O)OC[CH]1O[CH](C[CH]1O)n2cnc3c(N)ncnc23" RMP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[P@](=O)(O)OC[C@@H]1[C@H](C[C@@H](O1)n2cnc3c2ncnc3N)O" RMP SMILES "OpenEye OEToolkits" 1.5.0 "CP(=O)(O)OCC1C(CC(O1)n2cnc3c2ncnc3N)O" RMP InChI InChI 1.03 "InChI=1S/C11H16N5O5P/c1-22(18,19)20-3-7-6(17)2-8(21-7)16-5-15-9-10(12)13-4-14-11(9)16/h4-8,17H,2-3H2,1H3,(H,18,19)(H2,12,13,14)/t6-,7+,8+/m0/s1" RMP InChIKey InChI 1.03 YNCYIAAXFUCITC-XLPZGREQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RMP "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxy-5'-O-[(S)-hydroxy(methyl)phosphoryl]adenosine" RMP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-methyl-phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RMP "Create component" 2001-10-09 RCSB RMP "Modify descriptor" 2011-06-04 RCSB #