data_RN2 # _chem_comp.id RN2 _chem_comp.name Calpeptin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H32 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-09 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 364.479 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RN2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AKU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RN2 C10 C1 C 0 1 N N N N N N 11.656 -1.287 22.778 0.899 2.008 0.027 C10 RN2 1 RN2 C13 C2 C 0 1 N N N N N N 13.635 -1.528 24.257 -0.016 4.206 -0.731 C13 RN2 2 RN2 C15 C3 C 0 1 N N N N N N 10.176 2.019 21.660 -1.643 0.141 -0.437 C15 RN2 3 RN2 C20 C4 C 0 1 Y N N N N N 7.317 4.770 21.750 -6.038 0.356 0.335 C20 RN2 4 RN2 C21 C5 C 0 1 Y N N N N N 6.042 4.819 21.203 -7.216 -0.037 0.941 C21 RN2 5 RN2 C22 C6 C 0 1 Y N N N N N 5.174 3.744 21.340 -7.593 -1.367 0.922 C22 RN2 6 RN2 C24 C7 C 0 1 Y N N N N N 6.852 2.556 22.571 -5.609 -1.911 -0.305 C24 RN2 7 RN2 C01 C8 C 0 1 N N N N N N 5.708 2.429 18.551 6.246 -2.770 -2.655 C01 RN2 8 RN2 C02 C9 C 0 1 N N N N N N 5.617 0.969 18.999 6.477 -1.831 -1.470 C02 RN2 9 RN2 C03 C10 C 0 1 N N N N N N 6.925 0.488 19.655 5.184 -1.699 -0.663 C03 RN2 10 RN2 C04 C11 C 0 1 N N N N N N 7.217 -0.873 19.040 5.415 -0.759 0.522 C04 RN2 11 RN2 C05 C12 C 0 1 N N S N N N 7.883 -1.965 19.975 4.122 -0.628 1.329 C05 RN2 12 RN2 C07 C13 C 0 1 N N N N N N 9.561 -0.826 21.457 1.793 -0.183 0.767 C07 RN2 13 RN2 C09 C14 C 0 1 N N S N N N 11.001 -0.360 21.779 0.741 0.490 -0.077 C09 RN2 14 RN2 C11 C15 C 0 1 N N N N N N 13.128 -0.981 22.917 -0.086 2.690 -0.925 C11 RN2 15 RN2 C12 C16 C 0 1 N N N N N N 13.904 -1.671 21.793 0.277 2.343 -2.370 C12 RN2 16 RN2 C18 C17 C 0 1 N N N N N N 9.128 3.553 23.060 -3.954 -0.149 -0.956 C18 RN2 17 RN2 C19 C18 C 0 1 Y N N N N N 7.727 3.632 22.435 -5.236 -0.580 -0.290 C19 RN2 18 RN2 C23 C19 C 0 1 Y N N N N N 5.581 2.616 22.025 -6.791 -2.303 0.296 C23 RN2 19 RN2 C25 C20 C 0 1 N N N N N N 7.647 -3.208 19.267 4.385 0.211 2.581 C25 RN2 20 RN2 N06 N1 N 0 1 N N N N N N 9.223 -1.558 20.204 3.099 0.027 0.509 N06 RN2 21 RN2 N14 N2 N 0 1 N N N N N N 10.934 0.965 22.340 -0.589 0.104 0.401 N14 RN2 22 RN2 O08 O1 O 0 1 N N N N N N 8.683 -0.581 22.224 1.464 -0.914 1.677 O08 RN2 23 RN2 O16 O2 O 0 1 N N N N N N 9.592 1.779 20.658 -1.491 0.495 -1.590 O16 RN2 24 RN2 O17 O3 O 0 1 N N N N N N 10.124 3.341 22.141 -2.865 -0.214 0.002 O17 RN2 25 RN2 O26 O4 O 0 1 N N N N N N 7.294 -4.338 19.876 4.951 1.467 2.203 O26 RN2 26 RN2 H102 H1 H 0 0 N N N N N N 11.169 -1.163 23.757 0.696 2.326 1.049 H102 RN2 27 RN2 H101 H2 H 0 0 N N N N N N 11.535 -2.326 22.437 1.918 2.287 -0.244 H101 RN2 28 RN2 H133 H3 H 0 0 N N N N N N 13.090 -1.045 25.081 0.994 4.553 -0.945 H133 RN2 29 RN2 H131 H4 H 0 0 N N N N N N 13.469 -2.615 24.296 -0.719 4.691 -1.409 H131 RN2 30 RN2 H132 H5 H 0 0 N N N N N N 14.710 -1.317 24.356 -0.275 4.453 0.298 H132 RN2 31 RN2 H201 H6 H 0 0 N N N N N N 7.986 5.611 21.644 -5.746 1.396 0.347 H201 RN2 32 RN2 H211 H7 H 0 0 N N N N N N 5.723 5.700 20.667 -7.843 0.694 1.430 H211 RN2 33 RN2 H221 H8 H 0 0 N N N N N N 4.183 3.790 20.912 -8.513 -1.675 1.396 H221 RN2 34 RN2 H241 H9 H 0 0 N N N N N N 7.167 1.671 23.105 -4.983 -2.642 -0.794 H241 RN2 35 RN2 H013 H10 H 0 0 N N N N N N 4.756 2.731 18.089 5.460 -2.365 -3.292 H013 RN2 36 RN2 H011 H11 H 0 0 N N N N N N 5.912 3.068 19.423 7.167 -2.864 -3.229 H011 RN2 37 RN2 H012 H12 H 0 0 N N N N N N 6.521 2.538 17.819 5.946 -3.752 -2.287 H012 RN2 38 RN2 H022 H13 H 0 0 N N N N N N 4.797 0.870 19.726 7.263 -2.236 -0.832 H022 RN2 39 RN2 H021 H14 H 0 0 N N N N N N 5.407 0.340 18.121 6.777 -0.849 -1.837 H021 RN2 40 RN2 H032 H15 H 0 0 N N N N N N 7.744 1.190 19.439 4.398 -1.294 -1.300 H032 RN2 41 RN2 H031 H16 H 0 0 N N N N N N 6.797 0.398 20.744 4.884 -2.680 -0.295 H031 RN2 42 RN2 H041 H17 H 0 0 N N N N N N 6.263 -1.284 18.679 6.201 -1.164 1.159 H041 RN2 43 RN2 H042 H18 H 0 0 N N N N N N 7.893 -0.712 18.187 5.715 0.222 0.154 H042 RN2 44 RN2 H051 H19 H 0 0 N N N N N N 7.328 -1.975 20.925 3.774 -1.618 1.621 H051 RN2 45 RN2 H091 H20 H 0 0 N N N N N N 11.589 -0.352 20.849 0.857 0.183 -1.116 H091 RN2 46 RN2 H111 H21 H 0 0 N N N N N N 13.294 0.105 22.872 -1.097 2.342 -0.711 H111 RN2 47 RN2 H121 H22 H 0 0 N N N N N N 14.976 -1.447 21.896 0.227 1.263 -2.507 H121 RN2 48 RN2 H123 H23 H 0 0 N N N N N N 13.749 -2.758 21.855 -0.425 2.828 -3.048 H123 RN2 49 RN2 H122 H24 H 0 0 N N N N N N 13.544 -1.304 20.820 1.288 2.690 -2.584 H122 RN2 50 RN2 H181 H25 H 0 0 N N N N N N 9.140 2.725 23.784 -3.741 -0.812 -1.795 H181 RN2 51 RN2 H182 H26 H 0 0 N N N N N N 9.331 4.500 23.582 -4.059 0.873 -1.319 H182 RN2 52 RN2 H231 H27 H 0 0 N N N N N N 4.907 1.779 22.135 -7.085 -3.342 0.281 H231 RN2 53 RN2 H252 H28 H 0 0 N N N N N N 8.581 -3.433 18.731 3.447 0.379 3.110 H252 RN2 54 RN2 H1 H29 H 0 1 N N N N N N 6.850 -2.995 18.540 5.079 -0.319 3.234 H1 RN2 55 RN2 H061 H30 H 0 0 N N N N N N 9.934 -1.761 19.531 3.362 0.611 -0.219 H061 RN2 56 RN2 H141 H31 H 0 0 N N N N N N 11.407 1.167 23.198 -0.710 -0.179 1.321 H141 RN2 57 RN2 H261 H32 H 0 0 N N N N N N 7.191 -5.027 19.230 5.144 2.052 2.948 H261 RN2 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RN2 C01 C02 SING N N 1 RN2 C02 C03 SING N N 2 RN2 C04 C03 SING N N 3 RN2 C04 C05 SING N N 4 RN2 C25 O26 SING N N 5 RN2 C25 C05 SING N N 6 RN2 C05 N06 SING N N 7 RN2 N06 C07 SING N N 8 RN2 O16 C15 DOUB N N 9 RN2 C21 C22 DOUB Y N 10 RN2 C21 C20 SING Y N 11 RN2 C22 C23 SING Y N 12 RN2 C07 C09 SING N N 13 RN2 C07 O08 DOUB N N 14 RN2 C15 O17 SING N N 15 RN2 C15 N14 SING N N 16 RN2 C20 C19 DOUB Y N 17 RN2 C09 N14 SING N N 18 RN2 C09 C10 SING N N 19 RN2 C12 C11 SING N N 20 RN2 C23 C24 DOUB Y N 21 RN2 O17 C18 SING N N 22 RN2 C19 C24 SING Y N 23 RN2 C19 C18 SING N N 24 RN2 C10 C11 SING N N 25 RN2 C11 C13 SING N N 26 RN2 C10 H102 SING N N 27 RN2 C10 H101 SING N N 28 RN2 C13 H133 SING N N 29 RN2 C13 H131 SING N N 30 RN2 C13 H132 SING N N 31 RN2 C20 H201 SING N N 32 RN2 C21 H211 SING N N 33 RN2 C22 H221 SING N N 34 RN2 C24 H241 SING N N 35 RN2 C01 H013 SING N N 36 RN2 C01 H011 SING N N 37 RN2 C01 H012 SING N N 38 RN2 C02 H022 SING N N 39 RN2 C02 H021 SING N N 40 RN2 C03 H032 SING N N 41 RN2 C03 H031 SING N N 42 RN2 C04 H041 SING N N 43 RN2 C04 H042 SING N N 44 RN2 C05 H051 SING N N 45 RN2 C09 H091 SING N N 46 RN2 C11 H111 SING N N 47 RN2 C12 H121 SING N N 48 RN2 C12 H123 SING N N 49 RN2 C12 H122 SING N N 50 RN2 C18 H181 SING N N 51 RN2 C18 H182 SING N N 52 RN2 C23 H231 SING N N 53 RN2 C25 H252 SING N N 54 RN2 C25 H1 SING N N 55 RN2 N06 H061 SING N N 56 RN2 N14 H141 SING N N 57 RN2 O26 H261 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RN2 InChI InChI 1.03 "InChI=1S/C20H32N2O4/c1-4-5-11-17(13-23)21-19(24)18(12-15(2)3)22-20(25)26-14-16-9-7-6-8-10-16/h6-10,15,17-18,23H,4-5,11-14H2,1-3H3,(H,21,24)(H,22,25)/t17-,18-/m0/s1" RN2 InChIKey InChI 1.03 JDNZSBPOIODDLU-ROUUACIJSA-N RN2 SMILES_CANONICAL CACTVS 3.385 "CCCC[C@@H](CO)NC(=O)[C@H](CC(C)C)NC(=O)OCc1ccccc1" RN2 SMILES CACTVS 3.385 "CCCC[CH](CO)NC(=O)[CH](CC(C)C)NC(=O)OCc1ccccc1" RN2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@@H](CO)NC(=O)[C@H](CC(C)C)NC(=O)OCc1ccccc1" RN2 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC(CO)NC(=O)C(CC(C)C)NC(=O)OCc1ccccc1" # _pdbx_chem_comp_identifier.comp_id RN2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(phenylmethyl) ~{N}-[(2~{S})-4-methyl-1-[[(2~{S})-1-oxidanylhexan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RN2 "Create component" 2020-10-09 PDBE RN2 "Initial release" 2020-10-28 RCSB RN2 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id RN2 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C25 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #