data_RN9 # _chem_comp.id RN9 _chem_comp.name "3-[3-[[1-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-2,5-bis(oxidanylidene)pyrrol-3-yl]amino]phenyl]-~{N}-(3-chloranyl-4-methyl-phenyl)propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H23 Cl N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-12 _chem_comp.pdbx_modified_date 2021-05-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 494.927 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RN9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LPS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RN9 N N1 N 0 1 N N N 61.114 10.628 46.459 6.002 0.403 -0.209 N RN9 1 RN9 C C1 C 0 1 N N N 59.960 10.732 47.391 5.653 1.621 0.241 C RN9 2 RN9 O O1 O 0 1 N N N 58.815 10.306 47.079 6.415 2.448 0.705 O RN9 3 RN9 C1 C2 C 0 1 N N S 61.143 9.963 45.162 7.364 -0.135 -0.211 C1 RN9 4 RN9 C10 C3 C 0 1 Y N N 61.170 13.060 52.493 -0.784 1.873 0.156 C10 RN9 5 RN9 C11 C4 C 0 1 N N N 59.887 12.841 53.261 -2.121 1.456 0.713 C11 RN9 6 RN9 C12 C5 C 0 1 N N N 59.472 14.030 54.143 -3.067 1.108 -0.438 C12 RN9 7 RN9 C13 C6 C 0 1 N N N 59.398 15.331 53.381 -4.403 0.691 0.119 C13 RN9 8 RN9 C14 C7 C 0 1 Y N N 60.468 17.598 53.387 -6.672 0.051 -0.206 C14 RN9 9 RN9 C15 C8 C 0 1 Y N N 61.293 18.415 54.151 -7.150 0.743 0.898 C15 RN9 10 RN9 C16 C9 C 0 1 Y N N 61.699 19.645 53.664 -8.405 0.458 1.400 C16 RN9 11 RN9 C17 C10 C 0 1 Y N N 61.303 20.107 52.409 -9.185 -0.515 0.804 C17 RN9 12 RN9 C18 C11 C 0 1 N N N 61.749 21.459 51.915 -10.554 -0.823 1.355 C18 RN9 13 RN9 C19 C12 C 0 1 Y N N 60.474 19.261 51.662 -8.712 -1.207 -0.297 C19 RN9 14 RN9 C2 C13 C 0 1 N N N 60.108 10.708 44.340 7.372 -1.482 -0.885 C2 RN9 15 RN9 C20 C14 C 0 1 Y N N 60.051 18.030 52.131 -7.459 -0.923 -0.807 C20 RN9 16 RN9 C21 C15 C 0 1 Y N N 62.269 13.670 53.083 -0.542 3.203 -0.138 C21 RN9 17 RN9 C22 C16 C 0 1 Y N N 63.437 13.874 52.367 0.683 3.590 -0.650 C22 RN9 18 RN9 C23 C17 C 0 1 Y N N 63.528 13.460 51.049 1.670 2.649 -0.868 C23 RN9 19 RN9 C24 C18 C 0 1 N N N 60.410 11.391 48.482 4.206 1.790 0.082 C24 RN9 20 RN9 C3 C19 C 0 1 N N N 59.140 8.599 43.524 7.008 -2.617 1.144 C3 RN9 21 RN9 C4 C20 C 0 1 N N N 60.265 7.824 44.137 6.980 -1.336 1.935 C4 RN9 22 RN9 C5 C21 C 0 1 N N N 60.830 8.471 45.396 7.855 -0.292 1.232 C5 RN9 23 RN9 C6 C22 C 0 1 N N N 62.187 11.257 47.020 4.912 -0.249 -0.652 C6 RN9 24 RN9 C7 C23 C 0 1 N N N 61.775 11.722 48.257 3.735 0.642 -0.469 C7 RN9 25 RN9 C8 C24 C 0 1 Y N N 62.442 12.844 50.441 1.431 1.312 -0.574 C8 RN9 26 RN9 C9 C25 C 0 1 Y N N 61.269 12.647 51.166 0.200 0.928 -0.055 C9 RN9 27 RN9 N1 N2 N 0 1 N N N 59.185 9.965 43.639 7.192 -2.612 -0.184 N1 RN9 28 RN9 N2 N3 N 0 1 N N N 62.575 12.462 49.082 2.427 0.359 -0.794 N2 RN9 29 RN9 N3 N4 N 0 1 N N N 60.137 16.329 53.925 -5.400 0.337 -0.716 N3 RN9 30 RN9 O1 O2 O 0 1 N N N 58.187 8.056 42.973 6.862 -3.674 1.720 O1 RN9 31 RN9 O2 O3 O 0 1 N N N 60.115 11.933 44.298 7.543 -1.546 -2.083 O2 RN9 32 RN9 O3 O4 O 0 1 N N N 58.734 15.437 52.354 -4.582 0.674 1.318 O3 RN9 33 RN9 O4 O5 O 0 1 N N N 63.289 11.424 46.475 4.892 -1.368 -1.121 O4 RN9 34 RN9 CL CL1 CL 0 0 N N N 59.972 19.744 50.073 -9.697 -2.424 -1.046 CL RN9 35 RN9 H1 H1 H 0 1 N N N 62.134 10.063 44.695 8.024 0.545 -0.748 H1 RN9 36 RN9 H2 H2 H 0 1 N N N 59.080 12.649 52.538 -1.991 0.583 1.353 H2 RN9 37 RN9 H3 H3 H 0 1 N N N 60.017 11.961 53.907 -2.543 2.275 1.295 H3 RN9 38 RN9 H4 H4 H 0 1 N N N 58.482 13.819 54.573 -3.196 1.980 -1.079 H4 RN9 39 RN9 H5 H5 H 0 1 N N N 60.208 14.139 54.953 -2.644 0.289 -1.021 H5 RN9 40 RN9 H6 H6 H 0 1 N N N 61.618 18.089 55.128 -6.542 1.503 1.365 H6 RN9 41 RN9 H7 H7 H 0 1 N N N 62.341 20.265 54.273 -8.778 0.997 2.259 H7 RN9 42 RN9 H8 H8 H 0 1 N N N 61.019 22.222 52.224 -11.293 -0.189 0.865 H8 RN9 43 RN9 H9 H9 H 0 1 N N N 62.734 21.699 52.343 -10.793 -1.870 1.168 H9 RN9 44 RN9 H10 H10 H 0 1 N N N 61.820 21.443 50.817 -10.566 -0.633 2.428 H10 RN9 45 RN9 H11 H11 H 0 1 N N N 59.404 17.410 51.528 -7.089 -1.463 -1.666 H11 RN9 46 RN9 H12 H12 H 0 1 N N N 62.212 13.989 54.113 -1.313 3.940 0.031 H12 RN9 47 RN9 H13 H13 H 0 1 N N N 64.280 14.358 52.839 0.868 4.629 -0.878 H13 RN9 48 RN9 H14 H14 H 0 1 N N N 64.442 13.616 50.495 2.626 2.953 -1.268 H14 RN9 49 RN9 H15 H15 H 0 1 N N N 59.836 11.624 49.366 3.626 2.660 0.352 H15 RN9 50 RN9 H16 H16 H 0 1 N N N 59.897 6.820 44.396 5.956 -0.969 1.997 H16 RN9 51 RN9 H17 H17 H 0 1 N N N 61.074 7.738 43.396 7.365 -1.518 2.938 H17 RN9 52 RN9 H18 H18 H 0 1 N N N 60.093 8.382 46.207 8.893 -0.625 1.232 H18 RN9 53 RN9 H19 H19 H 0 1 N N N 61.756 7.951 45.683 7.774 0.663 1.752 H19 RN9 54 RN9 H20 H20 H 0 1 N N N 60.425 12.168 50.693 0.011 -0.110 0.175 H20 RN9 55 RN9 H21 H21 H 0 1 N N N 58.470 10.477 43.162 7.196 -3.459 -0.657 H21 RN9 56 RN9 H22 H22 H 0 1 N N N 63.410 12.797 48.646 2.197 -0.502 -1.175 H22 RN9 57 RN9 H23 H23 H 0 1 N N N 60.501 16.143 54.838 -5.237 0.281 -1.671 H23 RN9 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RN9 O1 C3 DOUB N N 1 RN9 C3 N1 SING N N 2 RN9 C3 C4 SING N N 3 RN9 N1 C2 SING N N 4 RN9 C4 C5 SING N N 5 RN9 O2 C2 DOUB N N 6 RN9 C2 C1 SING N N 7 RN9 C1 C5 SING N N 8 RN9 C1 N SING N N 9 RN9 N C6 SING N N 10 RN9 N C SING N N 11 RN9 O4 C6 DOUB N N 12 RN9 C6 C7 SING N N 13 RN9 O C DOUB N N 14 RN9 C C24 SING N N 15 RN9 C7 C24 DOUB N N 16 RN9 C7 N2 SING N N 17 RN9 N2 C8 SING N N 18 RN9 CL C19 SING N N 19 RN9 C8 C23 DOUB Y N 20 RN9 C8 C9 SING Y N 21 RN9 C23 C22 SING Y N 22 RN9 C9 C10 DOUB Y N 23 RN9 C19 C20 DOUB Y N 24 RN9 C19 C17 SING Y N 25 RN9 C18 C17 SING N N 26 RN9 C20 C14 SING Y N 27 RN9 O3 C13 DOUB N N 28 RN9 C22 C21 DOUB Y N 29 RN9 C17 C16 DOUB Y N 30 RN9 C10 C21 SING Y N 31 RN9 C10 C11 SING N N 32 RN9 C11 C12 SING N N 33 RN9 C13 N3 SING N N 34 RN9 C13 C12 SING N N 35 RN9 C14 N3 SING N N 36 RN9 C14 C15 DOUB Y N 37 RN9 C16 C15 SING Y N 38 RN9 C1 H1 SING N N 39 RN9 C11 H2 SING N N 40 RN9 C11 H3 SING N N 41 RN9 C12 H4 SING N N 42 RN9 C12 H5 SING N N 43 RN9 C15 H6 SING N N 44 RN9 C16 H7 SING N N 45 RN9 C18 H8 SING N N 46 RN9 C18 H9 SING N N 47 RN9 C18 H10 SING N N 48 RN9 C20 H11 SING N N 49 RN9 C21 H12 SING N N 50 RN9 C22 H13 SING N N 51 RN9 C23 H14 SING N N 52 RN9 C24 H15 SING N N 53 RN9 C4 H16 SING N N 54 RN9 C4 H17 SING N N 55 RN9 C5 H18 SING N N 56 RN9 C5 H19 SING N N 57 RN9 C9 H20 SING N N 58 RN9 N1 H21 SING N N 59 RN9 N2 H22 SING N N 60 RN9 N3 H23 SING N N 61 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RN9 InChI InChI 1.03 "InChI=1S/C25H23ClN4O5/c1-14-5-7-17(12-18(14)26)28-21(31)9-6-15-3-2-4-16(11-15)27-19-13-23(33)30(25(19)35)20-8-10-22(32)29-24(20)34/h2-5,7,11-13,20,27H,6,8-10H2,1H3,(H,28,31)(H,29,32,34)/t20-/m0/s1" RN9 InChIKey InChI 1.03 YDYSAFPHVGVORZ-FQEVSTJZSA-N RN9 SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(NC(=O)CCc2cccc(NC3=CC(=O)N([C@H]4CCC(=O)NC4=O)C3=O)c2)cc1Cl" RN9 SMILES CACTVS 3.385 "Cc1ccc(NC(=O)CCc2cccc(NC3=CC(=O)N([CH]4CCC(=O)NC4=O)C3=O)c2)cc1Cl" RN9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1Cl)NC(=O)CCc2cccc(c2)NC3=CC(=O)N(C3=O)[C@H]4CCC(=O)NC4=O" RN9 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1Cl)NC(=O)CCc2cccc(c2)NC3=CC(=O)N(C3=O)C4CCC(=O)NC4=O" # _pdbx_chem_comp_identifier.comp_id RN9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[3-[[1-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-2,5-bis(oxidanylidene)pyrrol-3-yl]amino]phenyl]-~{N}-(3-chloranyl-4-methyl-phenyl)propanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RN9 "Create component" 2021-02-12 RCSB RN9 "Initial release" 2021-06-02 RCSB ##