data_RNG # _chem_comp.id RNG _chem_comp.name "(6,10-DIOXO-OCTAHYDRO-PYRIDAZINO[1,2-A][1,2]DIAZEPIN-1-YL)-ACETALDEHYDE FRAGMENT" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H16 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "FUSED RING FRAGMENT OF INHIBITOR" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-06-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 240.256 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RNG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3HAT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RNG O O O 0 1 N N N N Y Y 17.916 -17.710 24.014 3.637 0.522 0.895 O RNG 1 RNG C C C 0 1 N N N N Y Y 17.134 -16.920 24.684 3.444 -0.412 0.154 C RNG 2 RNG CA CA C 0 1 N N N N N N 17.518 -16.708 26.145 2.042 -0.751 -0.282 CA RNG 3 RNG CH CH C 0 1 N N R N N N 18.753 -15.724 26.308 1.077 0.325 0.220 CH RNG 4 RNG CG CG C 0 1 N N N N N N 19.756 -16.368 27.325 1.401 1.657 -0.464 CG RNG 5 RNG CF CF C 0 1 N N N N N N 20.861 -16.961 26.695 0.367 2.703 -0.032 CF RNG 6 RNG CE CE C 0 1 N N N N N N 21.549 -16.059 25.593 -1.014 2.277 -0.540 CE RNG 7 RNG N1 N1 N 0 1 N N N N N N 20.742 -14.814 25.231 -1.333 0.949 -0.053 N1 RNG 8 RNG C1 C1 C 0 1 N N N N N N ? ? ? -2.465 0.497 0.377 C1 RNG 9 RNG O1 O1 O 0 1 N N N N N N ? ? ? -3.453 1.160 0.142 O1 RNG 10 RNG CD CD C 0 1 N N N N N N ? ? ? -2.660 -0.774 1.136 CD RNG 11 RNG CC CC C 0 1 N N N N N N ? ? ? -3.137 -1.880 0.078 CC RNG 12 RNG CB CB C 0 1 N N N N N N ? ? ? -2.065 -1.446 -1.023 CB RNG 13 RNG C2 C2 C 0 1 N N N N N N ? ? ? -0.766 -1.245 -0.319 C2 RNG 14 RNG O2 O2 O 0 1 N N N N N N ? ? ? -0.139 -2.220 0.040 O2 RNG 15 RNG N2 N2 N 0 1 N N N N N N 19.488 -15.119 25.007 -0.282 -0.071 -0.079 N2 RNG 16 RNG HA1 HA1 H 0 1 N N N N N N 16.655 -16.284 26.679 2.000 -0.796 -1.371 HA1 RNG 17 RNG HA2 HA2 H 0 1 N N N N N N 17.780 -17.681 26.586 1.756 -1.717 0.132 HA2 RNG 18 RNG HH HH H 0 1 N N N N N N 18.345 -14.845 26.829 1.190 0.437 1.299 HH RNG 19 RNG HG1 HG1 H 0 1 N N N N N N 20.118 -15.584 28.006 2.397 1.986 -0.170 HG1 RNG 20 RNG HG2 HG2 H 0 1 N N N N N N 19.225 -17.139 27.903 1.361 1.531 -1.546 HG2 RNG 21 RNG HF1 HF1 H 0 1 N N N N N N 21.611 -17.195 27.465 0.350 2.771 1.056 HF1 RNG 22 RNG HF2 HF2 H 0 1 N N N N N N 20.525 -17.892 26.216 0.629 3.672 -0.456 HF2 RNG 23 RNG HE1 HE1 H 0 1 N N N N N N 22.532 -15.739 25.969 -1.764 2.983 -0.184 HE1 RNG 24 RNG HE2 HE2 H 0 1 N N N N N N 21.683 -16.663 24.683 -1.013 2.272 -1.630 HE2 RNG 25 RNG HD1 HD1 H 0 1 N N N N N N ? ? ? -1.720 -1.080 1.597 HD1 RNG 26 RNG HD2 HD2 H 0 1 N N N N N N ? ? ? -3.424 -0.637 1.902 HD2 RNG 27 RNG HC1 HC1 H 0 1 N N N N N N ? ? ? -2.975 -2.896 0.438 HC1 RNG 28 RNG HC2 HC2 H 0 1 N N N N N N ? ? ? -4.163 -1.722 -0.255 HC2 RNG 29 RNG HB1 HB1 H 0 1 N N N N N N ? ? ? -1.964 -2.231 -1.772 HB1 RNG 30 RNG HB2 HB2 H 0 1 N N N N N N ? ? ? -2.377 -0.516 -1.498 HB2 RNG 31 RNG OXT OXT O 0 1 N Y N N Y Y ? ? ? 4.479 -1.145 -0.286 O3 RNG 32 RNG HXT HXT H 0 1 N Y N N Y Y ? ? ? 5.360 -0.887 0.018 H1 RNG 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RNG O C DOUB N N 1 RNG C CA SING N N 2 RNG CA CH SING N N 3 RNG CA HA1 SING N N 4 RNG CA HA2 SING N N 5 RNG CH CG SING N N 6 RNG CH N2 SING N N 7 RNG CH HH SING N N 8 RNG CG CF SING N N 9 RNG CG HG1 SING N N 10 RNG CG HG2 SING N N 11 RNG CF CE SING N N 12 RNG CF HF1 SING N N 13 RNG CF HF2 SING N N 14 RNG CE N1 SING N N 15 RNG CE HE1 SING N N 16 RNG CE HE2 SING N N 17 RNG N1 C1 SING N N 18 RNG N1 N2 SING N N 19 RNG C1 O1 DOUB N N 20 RNG C1 CD SING N N 21 RNG CD CC SING N N 22 RNG CD HD1 SING N N 23 RNG CD HD2 SING N N 24 RNG CC CB SING N N 25 RNG CC HC1 SING N N 26 RNG CC HC2 SING N N 27 RNG CB C2 SING N N 28 RNG CB HB1 SING N N 29 RNG CB HB2 SING N N 30 RNG C2 O2 DOUB N N 31 RNG C2 N2 SING N N 32 RNG C OXT SING N N 33 RNG OXT HXT SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RNG SMILES ACDLabs 10.04 "O=C1N2N(C(=O)CCC1)C(CCC2)CC=O" RNG InChI InChI 1.06 "InChI=1S/C11H16N2O4/c14-9-4-1-5-10(15)13-8(7-11(16)17)3-2-6-12(9)13/h8H,1-7H2,(H,16,17)/t8-/m1/s1" RNG InChIKey InChI 1.06 PDRXEYTZAMUQQR-MRVPVSSYSA-N RNG SMILES_CANONICAL CACTVS 3.385 "OC(=O)C[C@H]1CCCN2N1C(=O)CCCC2=O" RNG SMILES CACTVS 3.385 "OC(=O)C[CH]1CCCN2N1C(=O)CCCC2=O" RNG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1C[C@@H](N2C(=O)CCCC(=O)N2C1)CC(=O)O" RNG SMILES "OpenEye OEToolkits" 2.0.7 "C1CC(N2C(=O)CCCC(=O)N2C1)CC(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RNG "SYSTEMATIC NAME" ACDLabs 10.04 "[(1R)-6,10-dioxooctahydro-6H-pyridazino[1,2-a][1,2]diazepin-1-yl]acetaldehyde" RNG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(4~{R})-6,10-bis(oxidanylidene)-2,3,4,7,8,9-hexahydro-1~{H}-pyridazino[1,2-a][1,2]diazepin-4-yl]ethanoic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RNG _pdbx_chem_comp_synonyms.name "FUSED RING FRAGMENT OF INHIBITOR" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RNG "Create component" 1999-07-08 RCSB RNG "Modify descriptor" 2011-06-04 RCSB RNG "Modify synonyms" 2021-03-01 PDBE RNG "Modify backbone" 2023-11-03 PDBE RNG "Other modification" 2024-06-28 PDBE #