data_RNV # _chem_comp.id RNV _chem_comp.name "2-[(4-amino-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-[2-(diethylamino)ethyl]acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H27 N5 O S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-02-17 _chem_comp.pdbx_modified_date 2020-05-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 393.570 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RNV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VUS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RNV C10 C1 C 0 1 N N N 19.872 -11.452 42.024 6.089 -0.955 0.056 C10 RNV 1 RNV C12 C2 C 0 1 N N N 17.808 -12.677 42.307 7.833 0.292 1.183 C12 RNV 2 RNV N01 N1 N 0 1 N N N 22.539 -11.385 37.623 -2.561 -2.386 0.238 N01 RNV 3 RNV C02 C3 C 0 1 Y N N 21.290 -10.881 37.088 -2.523 -1.011 0.099 C02 RNV 4 RNV N03 N2 N 0 1 Y N N 20.741 -9.840 37.693 -1.364 -0.375 0.029 N03 RNV 5 RNV C04 C4 C 0 1 Y N N 19.593 -9.337 37.252 -1.313 0.945 -0.105 C04 RNV 6 RNV S05 S1 S 0 1 N N N 18.908 -7.889 38.121 0.259 1.735 -0.192 S05 RNV 7 RNV C06 C5 C 0 1 N N N 20.234 -7.211 39.206 1.344 0.293 -0.050 C06 RNV 8 RNV C07 C6 C 0 1 N N N 20.143 -7.899 40.596 2.783 0.740 -0.102 C07 RNV 9 RNV N08 N3 N 0 1 N N N 20.303 -9.354 40.755 3.774 -0.169 -0.014 N08 RNV 10 RNV C09 C7 C 0 1 N N N 20.197 -9.944 42.108 5.172 0.264 -0.063 C09 RNV 11 RNV N11 N4 N 0 1 N N N 18.538 -11.717 41.471 7.491 -0.520 0.007 N11 RNV 12 RNV C13 C8 C 0 1 N N N 18.687 -13.686 43.062 9.139 1.044 0.921 C13 RNV 13 RNV C14 C9 C 0 1 N N N 18.617 -12.183 40.083 8.395 -1.671 -0.120 C14 RNV 14 RNV C15 C10 C 0 1 N N N 17.484 -11.593 39.239 8.356 -2.194 -1.557 C15 RNV 15 RNV O16 O1 O 0 1 N N N 19.931 -7.237 41.552 3.048 1.917 -0.222 O16 RNV 16 RNV N17 N5 N 0 1 Y N N 18.935 -9.831 36.210 -2.405 1.684 -0.176 N17 RNV 17 RNV C18 C11 C 0 1 Y N N 19.420 -10.882 35.535 -3.621 1.122 -0.113 C18 RNV 18 RNV C19 C12 C 0 1 Y N N 20.629 -11.444 35.960 -3.726 -0.260 0.022 C19 RNV 19 RNV C20 C13 C 0 1 Y N N 21.065 -12.636 35.110 -5.110 -0.716 0.076 C20 RNV 20 RNV C21 C14 C 0 1 Y N N 20.107 -12.850 34.093 -6.006 0.267 -0.012 C21 RNV 21 RNV C22 C15 C 0 1 N N N 20.244 -13.976 33.042 -7.511 0.060 0.018 C22 RNV 22 RNV C23 C16 C 0 1 N N N 21.580 -14.777 33.156 -7.811 -1.419 -0.234 C23 RNV 23 RNV C24 C17 C 0 1 N N N 22.726 -14.015 33.865 -6.948 -2.269 0.704 C24 RNV 24 RNV C25 C18 C 0 1 N N N 22.300 -13.501 35.237 -5.488 -2.185 0.222 C25 RNV 25 RNV S26 S2 S 0 1 Y N N 18.854 -11.722 34.217 -5.226 1.830 -0.188 S26 RNV 26 RNV H1 H1 H 0 1 N N N 19.924 -11.880 43.036 5.899 -1.460 1.003 H1 RNV 27 RNV H2 H2 H 0 1 N N N 20.621 -11.938 41.382 5.891 -1.640 -0.768 H2 RNV 28 RNV H3 H3 H 0 1 N N N 17.227 -12.110 43.049 7.034 1.008 1.375 H3 RNV 29 RNV H4 H4 H 0 1 N N N 17.122 -13.241 41.658 7.955 -0.358 2.049 H4 RNV 30 RNV H5 H5 H 0 1 N N N 22.809 -10.836 38.414 -1.751 -2.875 0.452 H5 RNV 31 RNV H6 H6 H 0 1 N N N 22.421 -12.338 37.904 -3.398 -2.862 0.121 H6 RNV 32 RNV H7 H7 H 0 1 N N N 21.218 -7.412 38.757 1.154 -0.213 0.896 H7 RNV 33 RNV H8 H8 H 0 1 N N N 20.099 -6.125 39.321 1.147 -0.392 -0.874 H8 RNV 34 RNV H9 H9 H 0 1 N N N 20.481 -9.935 39.961 3.561 -1.111 0.083 H9 RNV 35 RNV H10 H10 H 0 1 N N N 21.153 -9.810 42.636 5.370 0.950 0.761 H10 RNV 36 RNV H11 H11 H 0 1 N N N 19.397 -9.433 42.663 5.362 0.770 -1.010 H11 RNV 37 RNV H13 H13 H 0 1 N N N 18.049 -14.357 43.656 9.338 1.725 1.749 H13 RNV 38 RNV H14 H14 H 0 1 N N N 19.269 -14.278 42.340 9.958 0.330 0.832 H14 RNV 39 RNV H15 H15 H 0 1 N N N 19.373 -13.146 43.731 9.052 1.613 -0.005 H15 RNV 40 RNV H16 H16 H 0 1 N N N 18.543 -13.280 40.068 9.411 -1.363 0.127 H16 RNV 41 RNV H17 H17 H 0 1 N N N 19.582 -11.875 39.655 8.078 -2.459 0.563 H17 RNV 42 RNV H18 H18 H 0 1 N N N 17.568 -11.959 38.205 9.005 -3.066 -1.644 H18 RNV 43 RNV H19 H19 H 0 1 N N N 16.515 -11.901 39.659 7.335 -2.474 -1.814 H19 RNV 44 RNV H20 H20 H 0 1 N N N 17.555 -10.495 39.247 8.702 -1.415 -2.237 H20 RNV 45 RNV H21 H21 H 0 1 N N N 20.193 -13.525 32.040 -7.900 0.351 0.993 H21 RNV 46 RNV H22 H22 H 0 1 N N N 19.406 -14.677 33.172 -7.978 0.665 -0.760 H22 RNV 47 RNV H23 H23 H 0 1 N N N 21.380 -15.700 33.720 -8.865 -1.616 -0.038 H23 RNV 48 RNV H24 H24 H 0 1 N N N 21.915 -15.033 32.140 -7.578 -1.668 -1.269 H24 RNV 49 RNV H25 H25 H 0 1 N N N 23.582 -14.694 33.989 -7.040 -1.893 1.723 H25 RNV 50 RNV H26 H26 H 0 1 N N N 23.024 -13.160 33.241 -7.280 -3.306 0.665 H26 RNV 51 RNV H27 H27 H 0 1 N N N 22.079 -14.356 35.893 -5.372 -2.689 -0.737 H27 RNV 52 RNV H28 H28 H 0 1 N N N 23.117 -12.907 35.672 -4.844 -2.656 0.965 H28 RNV 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RNV C22 C23 SING N N 1 RNV C22 C21 SING N N 2 RNV C23 C24 SING N N 3 RNV C24 C25 SING N N 4 RNV C21 S26 SING Y N 5 RNV C21 C20 DOUB Y N 6 RNV S26 C18 SING Y N 7 RNV C20 C25 SING N N 8 RNV C20 C19 SING Y N 9 RNV C18 C19 DOUB Y N 10 RNV C18 N17 SING Y N 11 RNV C19 C02 SING Y N 12 RNV N17 C04 DOUB Y N 13 RNV C02 N01 SING N N 14 RNV C02 N03 DOUB Y N 15 RNV C04 N03 SING Y N 16 RNV C04 S05 SING N N 17 RNV S05 C06 SING N N 18 RNV C06 C07 SING N N 19 RNV C15 C14 SING N N 20 RNV C14 N11 SING N N 21 RNV C07 N08 SING N N 22 RNV C07 O16 DOUB N N 23 RNV N08 C09 SING N N 24 RNV N11 C10 SING N N 25 RNV N11 C12 SING N N 26 RNV C10 C09 SING N N 27 RNV C12 C13 SING N N 28 RNV C10 H1 SING N N 29 RNV C10 H2 SING N N 30 RNV C12 H3 SING N N 31 RNV C12 H4 SING N N 32 RNV N01 H5 SING N N 33 RNV N01 H6 SING N N 34 RNV C06 H7 SING N N 35 RNV C06 H8 SING N N 36 RNV N08 H9 SING N N 37 RNV C09 H10 SING N N 38 RNV C09 H11 SING N N 39 RNV C13 H13 SING N N 40 RNV C13 H14 SING N N 41 RNV C13 H15 SING N N 42 RNV C14 H16 SING N N 43 RNV C14 H17 SING N N 44 RNV C15 H18 SING N N 45 RNV C15 H19 SING N N 46 RNV C15 H20 SING N N 47 RNV C22 H21 SING N N 48 RNV C22 H22 SING N N 49 RNV C23 H23 SING N N 50 RNV C23 H24 SING N N 51 RNV C24 H25 SING N N 52 RNV C24 H26 SING N N 53 RNV C25 H27 SING N N 54 RNV C25 H28 SING N N 55 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RNV SMILES ACDLabs 12.01 "C(CNC(CSc1nc(N)c2c(n1)sc3c2CCCC3)=O)N(CC)CC" RNV InChI InChI 1.03 "InChI=1S/C18H27N5OS2/c1-3-23(4-2)10-9-20-14(24)11-25-18-21-16(19)15-12-7-5-6-8-13(12)26-17(15)22-18/h3-11H2,1-2H3,(H,20,24)(H2,19,21,22)" RNV InChIKey InChI 1.03 IQQWKKVZCVYLKR-UHFFFAOYSA-N RNV SMILES_CANONICAL CACTVS 3.385 "CCN(CC)CCNC(=O)CSc1nc(N)c2c3CCCCc3sc2n1" RNV SMILES CACTVS 3.385 "CCN(CC)CCNC(=O)CSc1nc(N)c2c3CCCCc3sc2n1" RNV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN(CC)CCNC(=O)CSc1nc(c2c3c(sc2n1)CCCC3)N" RNV SMILES "OpenEye OEToolkits" 2.0.7 "CCN(CC)CCNC(=O)CSc1nc(c2c3c(sc2n1)CCCC3)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RNV "SYSTEMATIC NAME" ACDLabs 12.01 "2-[(4-amino-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-[2-(diethylamino)ethyl]acetamide" RNV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(4-azanyl-5,6,7,8-tetrahydro-[1]benzothiolo[2,3-d]pyrimidin-2-yl)sulfanyl]-~{N}-[2-(diethylamino)ethyl]ethanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RNV "Create component" 2020-02-17 RCSB RNV "Initial release" 2020-06-03 RCSB ##