data_RNX # _chem_comp.id RNX _chem_comp.name "1-(4-{[2-(4-{(4P)-4-[2-amino-4-(difluoromethyl)pyrimidin-5-yl]-6-[(3S)-3-methylmorpholin-4-yl]-1,3,5-triazin-2-yl}piperazin-1-yl)-2-oxoethoxy]methyl}piperidin-1-yl)prop-2-en-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H38 F2 N10 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-22 _chem_comp.pdbx_modified_date 2024-08-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 616.663 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RNX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8TWY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RNX C10 C1 C 0 1 Y N N N N N -16.360 7.663 26.539 4.876 -1.750 -0.825 C10 RNX 1 RNX N12 N1 N 0 1 Y N N N N N -18.246 8.841 27.592 3.092 -0.457 0.216 N12 RNX 2 RNX C13 C2 C 0 1 Y N N N N N -18.792 9.802 28.301 2.597 0.679 0.697 C13 RNX 3 RNX C15 C3 C 0 1 N N N N N N -21.247 9.260 27.617 0.831 -0.652 1.490 C15 RNX 4 RNX C21 C4 C 0 1 N N N N N N -26.857 10.913 29.097 -5.784 0.827 -0.598 C21 RNX 5 RNX C22 C5 C 0 1 N N N N N N -28.160 11.704 29.128 -7.073 0.017 -0.752 C22 RNX 6 RNX C24 C6 C 0 1 N N N N N N -30.303 12.072 30.371 -9.322 -0.053 -1.836 C24 RNX 7 RNX C26 C7 C 0 1 N N N N N N -32.398 11.544 28.902 -11.142 -0.096 -0.200 C26 RNX 8 RNX C28 C8 C 0 1 N N N N N N -33.260 13.990 28.798 -13.314 0.707 -0.926 C28 RNX 9 RNX C02 C9 C 0 1 Y N N N N N -15.356 5.626 25.124 5.876 -4.041 -1.794 C02 RNX 10 RNX C04 C10 C 0 1 Y N N N N N -16.816 6.347 26.714 4.809 -2.933 -0.082 C04 RNX 11 RNX C05 C11 C 0 1 N N N N N N -17.908 6.129 27.740 4.172 -2.943 1.284 C05 RNX 12 RNX C09 C12 C 0 1 Y N N N N N -15.337 7.892 25.611 5.472 -1.794 -2.089 C09 RNX 13 RNX C11 C13 C 0 1 Y N N N N N -16.937 8.827 27.358 4.323 -0.485 -0.290 C11 RNX 14 RNX C16 C14 C 0 1 N N N N N N -22.553 8.944 28.345 -0.505 -0.572 2.236 C16 RNX 15 RNX C18 C15 C 0 1 N N N N N N -24.183 10.839 28.608 -2.662 -0.149 1.147 C18 RNX 16 RNX C19 C16 C 0 1 N N N N N N -25.131 10.283 27.535 -3.585 0.738 0.352 C19 RNX 17 RNX C23 C17 C 0 1 N N N N N N -28.823 11.700 30.465 -8.047 0.776 -1.656 C23 RNX 18 RNX C27 C18 C 0 1 N N N N N N -33.190 12.670 29.572 -12.046 0.441 -1.228 C27 RNX 19 RNX C30 C19 C 0 1 N N N N N N -30.132 10.241 28.750 -8.982 -1.034 0.469 C30 RNX 20 RNX C31 C20 C 0 1 N N N N N N -29.002 11.046 28.104 -7.710 -0.193 0.623 C31 RNX 21 RNX C33 C21 C 0 1 N N N N N N -22.113 10.622 29.946 -0.950 1.604 1.035 C33 RNX 22 RNX C34 C22 C 0 1 N N N N N N -20.793 10.976 29.301 0.404 1.439 0.338 C34 RNX 23 RNX C36 C23 C 0 1 Y N N N N N -16.721 10.758 28.535 4.560 1.760 0.167 C36 RNX 24 RNX C38 C24 C 0 1 N N N N N N -14.902 12.460 28.149 6.551 2.746 0.929 C38 RNX 25 RNX C39 C25 C 0 1 N N N N N N -13.947 13.368 28.930 7.334 4.062 0.924 C39 RNX 26 RNX C41 C26 C 0 1 N N N N N N -15.672 14.002 30.338 6.425 4.617 -1.221 C41 RNX 27 RNX C42 C27 C 0 1 N N S N N N -16.554 12.938 29.694 5.634 3.307 -1.238 C42 RNX 28 RNX C43 C28 C 0 1 N N N N N N -17.371 12.393 30.873 4.333 3.506 -2.020 C43 RNX 29 RNX F06 F1 F 0 1 N N N N N N -17.972 4.925 28.439 4.610 -4.066 1.995 F06 RNX 30 RNX F07 F2 F 0 1 N N N N N N -19.130 6.386 27.199 4.533 -1.782 1.976 F07 RNX 31 RNX N01 N2 N 0 1 N N N N N N -14.824 4.511 24.353 6.391 -5.221 -2.294 N01 RNX 32 RNX N03 N3 N 0 1 Y N N N N N -16.317 5.350 25.992 5.313 -4.041 -0.594 N03 RNX 33 RNX N08 N4 N 0 1 Y N N N N N -14.888 6.845 24.944 5.949 -2.943 -2.533 N08 RNX 34 RNX N14 N5 N 0 1 N N N N N N -20.222 9.793 28.582 1.321 0.707 1.222 N14 RNX 35 RNX N17 N6 N 0 1 N N N N N N -22.985 10.127 28.966 -1.422 0.278 1.460 N17 RNX 36 RNX N25 N7 N 0 1 N N N N N N -31.033 11.282 29.330 -9.863 -0.384 -0.511 N25 RNX 37 RNX N35 N8 N 0 1 Y N N N N N -18.024 10.764 28.769 3.330 1.787 0.672 N35 RNX 38 RNX N37 N9 N 0 1 N N N N N N -15.872 11.825 29.046 5.320 2.912 0.143 N37 RNX 39 RNX N44 N10 N 0 1 Y N N N N N -16.176 9.790 27.821 5.056 0.625 -0.314 N44 RNX 40 RNX O20 O1 O 0 1 N N N N N N -26.450 10.709 27.751 -4.832 0.069 0.150 O20 RNX 41 RNX O29 O2 O 0 1 N N N N N N -32.895 10.865 28.065 -11.549 -0.281 0.932 O29 RNX 42 RNX O32 O3 O 0 1 N N N N N N -24.371 11.846 29.200 -3.034 -1.246 1.506 O32 RNX 43 RNX O40 O4 O 0 1 N N N N N N -14.592 14.414 29.578 7.602 4.446 -0.427 O40 RNX 44 RNX H151 H1 H 0 0 N N N N N N -20.862 8.342 27.150 1.558 -1.185 2.103 H151 RNX 45 RNX H152 H2 H 0 0 N N N N N N -21.439 10.014 26.840 0.691 -1.181 0.548 H152 RNX 46 RNX H212 H3 H 0 0 N N N N N N -27.010 9.939 29.584 -5.377 1.053 -1.583 H212 RNX 47 RNX H211 H4 H 0 0 N N N N N N -26.077 11.473 29.634 -6.000 1.758 -0.072 H211 RNX 48 RNX H221 H5 H 0 0 N N N N N N -27.955 12.742 28.825 -6.843 -0.950 -1.197 H221 RNX 49 RNX H242 H6 H 0 0 N N N N N N -30.382 13.140 30.121 -10.057 0.524 -2.397 H242 RNX 50 RNX H241 H7 H 0 0 N N N N N N -30.775 11.888 31.347 -9.088 -0.971 -2.377 H241 RNX 51 RNX H282 H8 H 0 0 N N N N N N -32.768 14.082 27.841 -13.977 1.102 -1.681 H282 RNX 52 RNX H281 H9 H 0 0 N N N N N N -33.802 14.829 29.209 -13.679 0.529 0.075 H281 RNX 53 RNX H051 H11 H 0 0 N N N N N N -17.736 6.908 28.497 3.087 -2.981 1.178 H051 RNX 54 RNX H091 H12 H 0 0 N N N N N N -14.933 8.880 25.448 5.542 -0.901 -2.693 H091 RNX 55 RNX H162 H13 H 0 0 N N N N N N -23.310 8.599 27.626 -0.929 -1.571 2.336 H162 RNX 56 RNX H161 H14 H 0 0 N N N N N N -22.383 8.163 29.101 -0.349 -0.136 3.223 H161 RNX 57 RNX H191 H15 H 0 0 N N N N N N -25.100 9.184 27.564 -3.756 1.667 0.897 H191 RNX 58 RNX H192 H16 H 0 0 N N N N N N -24.799 10.633 26.547 -3.132 0.961 -0.614 H192 RNX 59 RNX H231 H17 H 0 0 N N N N N N -28.737 10.694 30.901 -8.297 1.734 -1.199 H231 RNX 60 RNX H232 H18 H 0 0 N N N N N N -28.315 12.427 31.116 -7.583 0.946 -2.628 H232 RNX 61 RNX H272 H19 H 0 0 N N N N N N -33.670 12.542 30.531 -11.681 0.619 -2.229 H272 RNX 62 RNX H302 H21 H 0 0 N N N N N N -30.663 9.640 27.997 -8.720 -2.032 0.119 H302 RNX 63 RNX H301 H22 H 0 0 N N N N N N -29.740 9.580 29.537 -9.493 -1.106 1.429 H301 RNX 64 RNX H311 H23 H 0 0 N N N N N N -28.375 10.368 27.506 -7.007 -0.713 1.275 H311 RNX 65 RNX H312 H24 H 0 0 N N N N N N -29.438 11.815 27.450 -7.964 0.773 1.059 H312 RNX 66 RNX H331 H25 H 0 0 N N N N N N -22.550 11.520 30.408 -0.837 2.249 1.907 H331 RNX 67 RNX H332 H26 H 0 0 N N N N N N -21.952 9.854 30.717 -1.667 2.047 0.344 H332 RNX 68 RNX H342 H27 H 0 0 N N N N N N -20.087 11.301 30.079 0.269 0.881 -0.589 H342 RNX 69 RNX H341 H28 H 0 0 N N N N N N -20.950 11.794 28.583 0.820 2.421 0.113 H341 RNX 70 RNX H382 H29 H 0 0 N N N N N N -15.442 13.062 27.403 7.162 1.958 0.488 H382 RNX 71 RNX H381 H30 H 0 0 N N N N N N -14.319 11.679 27.638 6.295 2.479 1.954 H381 RNX 72 RNX H391 H31 H 0 0 N N N N N N -13.424 12.760 29.683 6.745 4.838 1.413 H391 RNX 73 RNX H392 H32 H 0 0 N N N N N N -13.214 13.791 28.227 8.275 3.928 1.458 H392 RNX 74 RNX H411 H33 H 0 0 N N N N N N -15.286 13.596 31.285 6.709 4.884 -2.239 H411 RNX 75 RNX H412 H34 H 0 0 N N N N N N -16.298 14.883 30.545 5.810 5.409 -0.795 H412 RNX 76 RNX H421 H35 H 0 0 N N N N N N -17.238 13.423 28.982 6.229 2.528 -1.714 H421 RNX 77 RNX H431 H36 H 0 0 N N N N N N -17.892 13.223 31.373 4.565 3.839 -3.032 H431 RNX 78 RNX H432 H37 H 0 0 N N N N N N -18.109 11.666 30.503 3.788 2.563 -2.064 H432 RNX 79 RNX H433 H38 H 0 0 N N N N N N -16.697 11.899 31.589 3.721 4.257 -1.521 H433 RNX 80 RNX H012 H39 H 0 0 N N N N N N -14.112 4.843 23.734 6.339 -6.034 -1.768 H012 RNX 81 RNX H011 H40 H 0 0 N N N N N N -14.435 3.831 24.975 6.806 -5.237 -3.171 H011 RNX 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RNX N01 C02 SING N N 1 RNX N08 C02 DOUB Y N 2 RNX N08 C09 SING Y N 3 RNX C02 N03 SING Y N 4 RNX C09 C10 DOUB Y N 5 RNX N03 C04 DOUB Y N 6 RNX C10 C04 SING Y N 7 RNX C10 C11 SING N N 8 RNX C04 C05 SING N N 9 RNX F07 C05 SING N N 10 RNX C11 N12 DOUB Y N 11 RNX C11 N44 SING Y N 12 RNX C19 O20 SING N N 13 RNX C19 C18 SING N N 14 RNX N12 C13 SING Y N 15 RNX C15 C16 SING N N 16 RNX C15 N14 SING N N 17 RNX C05 F06 SING N N 18 RNX O20 C21 SING N N 19 RNX N44 C36 DOUB Y N 20 RNX O29 C26 DOUB N N 21 RNX C31 C30 SING N N 22 RNX C31 C22 SING N N 23 RNX C38 C39 SING N N 24 RNX C38 N37 SING N N 25 RNX C13 N14 SING N N 26 RNX C13 N35 DOUB Y N 27 RNX C16 N17 SING N N 28 RNX C36 N35 SING Y N 29 RNX C36 N37 SING N N 30 RNX N14 C34 SING N N 31 RNX C18 N17 SING N N 32 RNX C18 O32 DOUB N N 33 RNX C30 N25 SING N N 34 RNX C28 C27 DOUB N N 35 RNX C26 N25 SING N N 36 RNX C26 C27 SING N N 37 RNX C39 O40 SING N N 38 RNX N17 C33 SING N N 39 RNX N37 C42 SING N N 40 RNX C21 C22 SING N N 41 RNX C22 C23 SING N N 42 RNX C34 C33 SING N N 43 RNX N25 C24 SING N N 44 RNX O40 C41 SING N N 45 RNX C42 C41 SING N N 46 RNX C42 C43 SING N N 47 RNX C24 C23 SING N N 48 RNX C15 H151 SING N N 49 RNX C15 H152 SING N N 50 RNX C21 H212 SING N N 51 RNX C21 H211 SING N N 52 RNX C22 H221 SING N N 53 RNX C24 H242 SING N N 54 RNX C24 H241 SING N N 55 RNX C28 H282 SING N N 56 RNX C28 H281 SING N N 57 RNX C05 H051 SING N N 58 RNX C09 H091 SING N N 59 RNX C16 H162 SING N N 60 RNX C16 H161 SING N N 61 RNX C19 H191 SING N N 62 RNX C19 H192 SING N N 63 RNX C23 H231 SING N N 64 RNX C23 H232 SING N N 65 RNX C27 H272 SING N N 66 RNX C30 H302 SING N N 67 RNX C30 H301 SING N N 68 RNX C31 H311 SING N N 69 RNX C31 H312 SING N N 70 RNX C33 H331 SING N N 71 RNX C33 H332 SING N N 72 RNX C34 H342 SING N N 73 RNX C34 H341 SING N N 74 RNX C38 H382 SING N N 75 RNX C38 H381 SING N N 76 RNX C39 H391 SING N N 77 RNX C39 H392 SING N N 78 RNX C41 H411 SING N N 79 RNX C41 H412 SING N N 80 RNX C42 H421 SING N N 81 RNX C43 H431 SING N N 82 RNX C43 H432 SING N N 83 RNX C43 H433 SING N N 84 RNX N01 H012 SING N N 85 RNX N01 H011 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RNX SMILES ACDLabs 12.01 "C=CC(=O)N1CCC(CC1)COCC(=O)N1CCN(CC1)c1nc(nc(n1)c1cnc(N)nc1C(F)F)N1CCOCC1C" RNX InChI InChI 1.06 "InChI=1S/C28H38F2N10O4/c1-3-21(41)37-6-4-19(5-7-37)16-44-17-22(42)38-8-10-39(11-9-38)27-34-25(20-14-32-26(31)33-23(20)24(29)30)35-28(36-27)40-12-13-43-15-18(40)2/h3,14,18-19,24H,1,4-13,15-17H2,2H3,(H2,31,32,33)/t18-/m0/s1" RNX InChIKey InChI 1.06 PVVOFYPFCTWUAT-SFHVURJKSA-N RNX SMILES_CANONICAL CACTVS 3.385 "C[C@H]1COCCN1c2nc(nc(n2)c3cnc(N)nc3C(F)F)N4CCN(CC4)C(=O)COCC5CCN(CC5)C(=O)C=C" RNX SMILES CACTVS 3.385 "C[CH]1COCCN1c2nc(nc(n2)c3cnc(N)nc3C(F)F)N4CCN(CC4)C(=O)COCC5CCN(CC5)C(=O)C=C" RNX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1COCCN1c2nc(nc(n2)N3CCN(CC3)C(=O)COCC4CCN(CC4)C(=O)C=C)c5cnc(nc5C(F)F)N" RNX SMILES "OpenEye OEToolkits" 2.0.7 "CC1COCCN1c2nc(nc(n2)N3CCN(CC3)C(=O)COCC4CCN(CC4)C(=O)C=C)c5cnc(nc5C(F)F)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RNX "SYSTEMATIC NAME" ACDLabs 12.01 "1-(4-{[2-(4-{(4P)-4-[2-amino-4-(difluoromethyl)pyrimidin-5-yl]-6-[(3S)-3-methylmorpholin-4-yl]-1,3,5-triazin-2-yl}piperazin-1-yl)-2-oxoethoxy]methyl}piperidin-1-yl)prop-2-en-1-one" RNX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[4-[[2-[4-[4-[2-azanyl-4-[bis(fluoranyl)methyl]pyrimidin-5-yl]-6-[(3~{S})-3-methylmorpholin-4-yl]-1,3,5-triazin-2-yl]piperazin-1-yl]-2-oxidanylidene-ethoxy]methyl]piperidin-1-yl]prop-2-en-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RNX "Create component" 2023-08-22 RCSB RNX "Initial release" 2024-08-28 RCSB #