data_RQ2 # _chem_comp.id RQ2 _chem_comp.name "Ganciclovir triphosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H16 N5 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[[(2~{R})-2-[(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)methoxy]-3-oxidanyl-propoxy]-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-15 _chem_comp.pdbx_modified_date 2021-05-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 495.170 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RQ2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AOM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RQ2 C02 C1 C 0 1 N N N -5.158 -11.889 17.757 -7.829 -0.306 -0.567 C02 RQ2 1 RQ2 C04 C2 C 0 1 Y N N -6.378 -12.937 16.148 -5.566 -0.285 -0.102 C04 RQ2 2 RQ2 C05 C3 C 0 1 Y N N -6.888 -11.736 15.712 -5.680 -1.504 0.574 C05 RQ2 3 RQ2 C07 C4 C 0 1 Y N N -7.740 -13.246 14.438 -3.599 -0.908 0.671 C07 RQ2 4 RQ2 C09 C5 C 0 1 N N N -6.743 -15.439 15.205 -3.640 1.277 -0.594 C09 RQ2 5 RQ2 C11 C6 C 0 1 N N R -4.509 -16.082 15.496 -1.550 2.429 -0.816 C11 RQ2 6 RQ2 C12 C7 C 0 1 N N N -4.476 -17.215 14.572 -1.044 2.130 -2.228 C12 RQ2 7 RQ2 C14 C8 C 0 1 N N N -3.649 -16.451 16.790 -0.363 2.756 0.092 C14 RQ2 8 RQ2 C28 C9 C 0 1 N N N -6.522 -10.516 16.350 -6.954 -2.113 0.663 C28 RQ2 9 RQ2 N01 N1 N 0 1 N N N -4.304 -11.928 18.768 -8.914 0.303 -1.145 N01 RQ2 10 RQ2 N03 N2 N 0 1 N N N -5.524 -13.031 17.174 -6.652 0.273 -0.651 N03 RQ2 11 RQ2 N06 N3 N 0 1 Y N N -7.732 -11.924 14.642 -4.444 -1.832 1.023 N06 RQ2 12 RQ2 N08 N4 N 0 1 Y N N -6.932 -13.934 15.324 -4.247 0.069 -0.028 N08 RQ2 13 RQ2 N30 N5 N 0 1 N N N -5.638 -10.626 17.366 -8.004 -1.491 0.084 N30 RQ2 14 RQ2 O10 O1 O 0 1 N N N -5.755 -15.912 15.956 -2.241 1.288 -0.305 O10 RQ2 15 RQ2 O13 O2 O 0 1 N N N -3.331 -17.126 13.903 -0.066 1.090 -2.173 O13 RQ2 16 RQ2 O15 O3 O 0 1 N N N -2.540 -15.941 16.706 0.584 1.688 0.041 O15 RQ2 17 RQ2 O17 O4 O 0 1 N N N -0.375 -15.757 17.066 2.722 2.924 0.562 O17 RQ2 18 RQ2 O18 O5 O 0 1 N N N -2.008 -14.346 18.311 1.631 1.657 2.453 O18 RQ2 19 RQ2 O19 O6 O 0 1 N N N -1.718 -16.750 18.975 2.836 0.404 0.481 O19 RQ2 20 RQ2 O21 O7 O 0 1 N N N -1.634 -17.983 21.149 4.573 -0.569 2.198 O21 RQ2 21 RQ2 O22 O8 O 0 1 N N N -1.047 -15.546 21.014 5.241 1.168 0.493 O22 RQ2 22 RQ2 O23 O9 O 0 1 N N N 0.315 -17.306 20.060 4.775 -1.163 -0.355 O23 RQ2 23 RQ2 O25 O10 O 0 1 N N N 1.489 -18.160 22.125 5.954 -2.516 -2.276 O25 RQ2 24 RQ2 O26 O11 O 0 1 N N N 2.719 -17.623 20.038 7.161 -0.685 -1.027 O26 RQ2 25 RQ2 O27 O12 O 0 1 N N N 1.141 -19.565 20.148 6.720 -2.836 0.218 O27 RQ2 26 RQ2 O29 O13 O 0 1 N N N -6.859 -9.372 16.083 -7.099 -3.176 1.244 O29 RQ2 27 RQ2 P16 P1 P 0 1 N N N -1.526 -15.701 17.970 1.960 1.695 0.877 P16 RQ2 28 RQ2 P20 P2 P 0 1 N N N -0.981 -16.891 20.509 4.376 -0.014 0.700 P20 RQ2 29 RQ2 P24 P3 P 0 1 N N N 1.487 -18.210 20.644 6.174 -1.776 -0.864 P24 RQ2 30 RQ2 H1 H1 H 0 1 N N N -8.318 -13.726 13.662 -2.542 -0.914 0.896 H1 RQ2 31 RQ2 H2 H2 H 0 1 N N N -7.678 -15.932 15.510 -3.788 1.285 -1.674 H2 RQ2 32 RQ2 H3 H3 H 0 1 N N N -6.527 -15.680 14.154 -4.108 2.158 -0.156 H3 RQ2 33 RQ2 H4 H4 H 0 1 N N N -4.093 -15.177 15.029 -2.230 3.281 -0.847 H4 RQ2 34 RQ2 H5 H5 H 0 1 N N N -5.327 -17.163 13.877 -1.878 1.811 -2.853 H5 RQ2 35 RQ2 H6 H6 H 0 1 N N N -4.517 -18.162 15.131 -0.596 3.028 -2.652 H6 RQ2 36 RQ2 H7 H7 H 0 1 N N N -4.159 -16.072 17.688 0.110 3.678 -0.246 H7 RQ2 37 RQ2 H8 H8 H 0 1 N N N -3.545 -17.544 16.861 -0.714 2.883 1.117 H8 RQ2 38 RQ2 H9 H9 H 0 1 N N N -3.943 -12.805 19.084 -8.806 1.148 -1.608 H9 RQ2 39 RQ2 H10 H10 H 0 1 N N N -4.020 -11.080 19.216 -9.789 -0.112 -1.091 H10 RQ2 40 RQ2 H11 H11 H 0 1 N N N -5.323 -9.805 17.842 -8.887 -1.890 0.132 H11 RQ2 41 RQ2 H12 H12 H 0 1 N N N -3.267 -17.847 13.287 0.300 0.847 -3.035 H12 RQ2 42 RQ2 H13 H13 H 0 1 N N N -1.471 -13.698 17.870 1.132 0.877 2.732 H13 RQ2 43 RQ2 H14 H14 H 0 1 N N N -2.090 -17.671 21.922 4.035 -1.345 2.404 H14 RQ2 44 RQ2 H15 H15 H 0 1 N N N 2.293 -17.754 22.428 6.757 -2.911 -2.643 H15 RQ2 45 RQ2 H16 H16 H 0 1 N N N 1.784 -19.841 19.506 6.123 -3.580 0.376 H16 RQ2 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RQ2 O13 C12 SING N N 1 RQ2 C07 N06 DOUB Y N 2 RQ2 C07 N08 SING Y N 3 RQ2 C12 C11 SING N N 4 RQ2 N06 C05 SING Y N 5 RQ2 C09 N08 SING N N 6 RQ2 C09 O10 SING N N 7 RQ2 N08 C04 SING Y N 8 RQ2 C11 O10 SING N N 9 RQ2 C11 C14 SING N N 10 RQ2 C05 C04 DOUB Y N 11 RQ2 C05 C28 SING N N 12 RQ2 O29 C28 DOUB N N 13 RQ2 C04 N03 SING N N 14 RQ2 C28 N30 SING N N 15 RQ2 O15 C14 SING N N 16 RQ2 O15 P16 SING N N 17 RQ2 O17 P16 DOUB N N 18 RQ2 N03 C02 DOUB N N 19 RQ2 N30 C02 SING N N 20 RQ2 C02 N01 SING N N 21 RQ2 P16 O18 SING N N 22 RQ2 P16 O19 SING N N 23 RQ2 O19 P20 SING N N 24 RQ2 O26 P24 DOUB N N 25 RQ2 O23 P20 SING N N 26 RQ2 O23 P24 SING N N 27 RQ2 O27 P24 SING N N 28 RQ2 P20 O22 DOUB N N 29 RQ2 P20 O21 SING N N 30 RQ2 P24 O25 SING N N 31 RQ2 C07 H1 SING N N 32 RQ2 C09 H2 SING N N 33 RQ2 C09 H3 SING N N 34 RQ2 C11 H4 SING N N 35 RQ2 C12 H5 SING N N 36 RQ2 C12 H6 SING N N 37 RQ2 C14 H7 SING N N 38 RQ2 C14 H8 SING N N 39 RQ2 N01 H9 SING N N 40 RQ2 N01 H10 SING N N 41 RQ2 N30 H11 SING N N 42 RQ2 O13 H12 SING N N 43 RQ2 O18 H13 SING N N 44 RQ2 O21 H14 SING N N 45 RQ2 O25 H15 SING N N 46 RQ2 O27 H16 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RQ2 InChI InChI 1.03 "InChI=1S/C9H16N5O13P3/c10-9-12-7-6(8(16)13-9)11-3-14(7)4-24-5(1-15)2-25-29(20,21)27-30(22,23)26-28(17,18)19/h3,5,15H,1-2,4H2,(H,20,21)(H,22,23)(H2,17,18,19)(H3,10,12,13,16)/t5-/m1/s1" RQ2 InChIKey InChI 1.03 OBABDJMYPMAQEP-RXMQYKEDSA-N RQ2 SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(CO[C@H](CO)CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)cnc2C(=O)N1" RQ2 SMILES CACTVS 3.385 "NC1=Nc2n(CO[CH](CO)CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)cnc2C(=O)N1" RQ2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1CO[C@H](CO)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N=C(NC2=O)N" RQ2 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1COC(CO)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N=C(NC2=O)N" # _pdbx_chem_comp_identifier.comp_id RQ2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R})-2-[(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)methoxy]-3-oxidanyl-propoxy]-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RQ2 _pdbx_chem_comp_synonyms.name "[[(2~{R})-2-[(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)methoxy]-3-oxidanyl-propoxy]-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RQ2 "Create component" 2020-10-15 PDBE RQ2 "Modify synonyms" 2021-03-01 PDBE RQ2 "Initial release" 2021-06-02 RCSB ##