data_RQA # _chem_comp.id RQA _chem_comp.name "5'-O-sulfocytidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H13 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-02-20 _chem_comp.pdbx_modified_date 2021-01-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 323.280 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RQA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VWD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RQA C1 C2 C 0 1 N N N -232.187 257.990 286.192 -2.262 0.865 -0.514 C1 RQA 1 RQA C2 C4 C 0 1 N N N -232.275 260.308 286.704 -4.355 1.709 -0.020 C2 RQA 2 RQA C3 C5 C 0 1 N N N -233.652 260.190 286.933 -4.521 0.716 0.967 C3 RQA 3 RQA C4 C6 C 0 1 N N N -234.237 258.921 286.766 -3.524 -0.178 1.171 C4 RQA 4 RQA C5 C1* C 0 1 N N R -234.154 256.483 286.255 -1.304 -1.055 0.632 C5 RQA 5 RQA C6 C2* C 0 1 N N R -234.684 255.887 287.569 -1.106 -1.941 -0.624 C6 RQA 6 RQA C7 C3* C 0 1 N N S -235.790 254.931 287.081 0.371 -2.380 -0.482 C7 RQA 7 RQA C8 C4* C 0 1 N N R -236.299 255.607 285.800 0.989 -1.329 0.460 C8 RQA 8 RQA C9 C5* C 0 1 N N N -237.611 256.326 285.938 2.159 -0.631 -0.235 C9 RQA 9 RQA N1 N1 N 0 1 N N N -233.514 257.829 286.398 -2.390 -0.095 0.421 N1 RQA 10 RQA N2 N3 N 0 1 N N N -231.603 259.223 286.343 -3.233 1.751 -0.727 N2 RQA 11 RQA N3 N4 N 0 1 N N N -231.595 261.541 286.834 -5.352 2.629 -0.249 N3 RQA 12 RQA O1 O1S O 0 1 N N N -240.209 257.718 286.845 4.612 1.679 1.181 O1 RQA 13 RQA O2 O2 O 0 1 N N N -231.496 257.078 285.864 -1.238 0.927 -1.173 O2 RQA 14 RQA O3 O2* O 0 1 N N N -233.655 255.299 288.350 -1.980 -3.071 -0.594 O3 RQA 15 RQA O4 O2S O 0 1 N N N -238.541 259.948 287.581 4.663 0.091 -0.748 O4 RQA 16 RQA O5 O3* O 0 1 N N N -235.253 253.642 286.748 0.452 -3.684 0.097 O5 RQA 17 RQA O6 O4* O 0 1 N N N -235.276 256.569 285.391 -0.039 -0.372 0.765 O6 RQA 18 RQA O7 O5* O 0 1 N N N -237.426 257.622 286.501 2.798 0.258 0.684 O7 RQA 19 RQA S1 S S 0 1 N N N -238.754 258.548 286.666 3.984 1.010 0.097 S1 RQA 20 RQA H1 H1 H 0 1 N N N -234.244 261.044 287.228 -5.428 0.669 1.551 H1 RQA 21 RQA H2 H2 H 0 1 N N N -235.298 258.810 286.936 -3.627 -0.948 1.922 H2 RQA 22 RQA H3 H3 H 0 1 N N N -233.415 255.785 285.835 -1.504 -1.672 1.509 H3 RQA 23 RQA H4 H4 H 0 1 N N N -235.163 256.696 288.140 -1.255 -1.361 -1.536 H4 RQA 24 RQA H5 H5 H 0 1 N N N -236.595 254.862 287.827 0.869 -2.363 -1.452 H5 RQA 25 RQA H6 H6 H 0 1 N N N -236.401 254.836 285.022 1.335 -1.809 1.376 H6 RQA 26 RQA H7 H7 H 0 1 N N N -238.072 256.428 284.944 2.877 -1.377 -0.576 H7 RQA 27 RQA H8 H8 H 0 1 N N N -238.275 255.741 286.592 1.789 -0.064 -1.089 H8 RQA 28 RQA H9 H9 H 0 1 N N N -230.613 261.592 286.654 -6.171 2.596 0.269 H9 RQA 29 RQA H10 H10 H 0 1 N N N -232.096 262.362 287.106 -5.235 3.312 -0.929 H10 RQA 30 RQA H12 H12 H 0 1 N N N -234.027 254.945 289.149 -1.893 -3.656 -1.360 H12 RQA 31 RQA H14 H14 H 0 1 N N N -234.936 253.217 287.536 0.027 -4.375 -0.429 H14 RQA 32 RQA O3S O3S O 0 1 N Y N -238.693 258.825 285.220 3.423 2.095 -0.812 O3S RQA 33 RQA H15 H15 H 0 1 N Y N -239.466 258.471 284.796 4.099 2.637 -1.241 H15 RQA 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RQA O6 C8 SING N N 1 RQA O6 C5 SING N N 2 RQA C8 C9 SING N N 3 RQA C8 C7 SING N N 4 RQA O2 C1 DOUB N N 5 RQA C9 O7 SING N N 6 RQA C1 N2 SING N N 7 RQA C1 N1 SING N N 8 RQA C5 N1 SING N N 9 RQA C5 C6 SING N N 10 RQA N2 C2 DOUB N N 11 RQA N1 C4 SING N N 12 RQA O7 S1 SING N N 13 RQA S1 O1 DOUB N N 14 RQA S1 O4 DOUB N N 15 RQA C2 N3 SING N N 16 RQA C2 C3 SING N N 17 RQA O5 C7 SING N N 18 RQA C4 C3 DOUB N N 19 RQA C7 C6 SING N N 20 RQA C6 O3 SING N N 21 RQA C3 H1 SING N N 22 RQA C4 H2 SING N N 23 RQA C5 H3 SING N N 24 RQA C6 H4 SING N N 25 RQA C7 H5 SING N N 26 RQA C8 H6 SING N N 27 RQA C9 H7 SING N N 28 RQA C9 H8 SING N N 29 RQA N3 H9 SING N N 30 RQA N3 H10 SING N N 31 RQA O3 H12 SING N N 32 RQA O5 H14 SING N N 33 RQA S1 O3S SING N N 34 RQA O3S H15 SING N N 35 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RQA SMILES ACDLabs 12.01 "C1(N=C(N)C=CN1C2C(O)C(C(COS(=O)(=O)O)O2)O)=O" RQA InChI InChI 1.03 "InChI=1S/C9H13N3O8S/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H2,10,11,15)(H,16,17,18)/t4-,6-,7-,8-/m1/s1" RQA InChIKey InChI 1.03 GSRRMZKNGWBOAT-XVFCMESISA-N RQA SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[S](O)(=O)=O)[C@@H](O)[C@H]2O" RQA SMILES CACTVS 3.385 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[S](O)(=O)=O)[CH](O)[CH]2O" RQA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COS(=O)(=O)O)O)O" RQA SMILES "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COS(=O)(=O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RQA "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-sulfocytidine" RQA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen sulfate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RQA "Create component" 2020-02-20 RCSB RQA "Initial release" 2021-02-03 RCSB ##