data_RQK
#
_chem_comp.id RQK
_chem_comp.name "(2~{R})-2-oxidanyl-2-[(6~{S},9~{S},12~{S},15~{S},17~{S})-6,10,12,17-tetramethyl-3-methylidene-7-oxidanyl-2,5,8,11,14-pentakis(oxidanylidene)-13-oxa-1,4,7,10-tetrazabicyclo[13.3.0]octadecan-9-yl]ethanamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H29 N5 O9"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-10-20
_chem_comp.pdbx_modified_date 2021-02-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 483.472
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RQK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7ALR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RQK C12 C1 C 0 1 N N N 19.877 6.159 14.838 0.168 -2.690 0.561 C12 RQK 1
RQK C15 C2 C 0 1 N N N 17.523 5.456 15.064 -1.827 -3.981 -0.123 C15 RQK 2
RQK C20 C3 C 0 1 N N S 18.328 9.674 14.976 -3.141 0.636 0.432 C20 RQK 3
RQK N24 N1 N 0 1 N N N 15.849 10.822 15.347 -5.515 2.294 -0.507 N24 RQK 4
RQK C30 C4 C 0 1 N N S 22.244 9.126 14.814 0.265 2.266 0.160 C30 RQK 5
RQK C01 C5 C 0 1 N N N 25.825 8.611 9.700 6.724 0.874 -1.454 C01 RQK 6
RQK C02 C6 C 0 1 N N S 25.424 7.627 10.637 5.917 0.423 -0.238 C02 RQK 7
RQK C03 C7 C 0 1 N N N 25.455 8.091 12.145 5.132 1.597 0.376 C03 RQK 8
RQK C04 C8 C 0 1 N N S 24.694 7.201 12.749 3.796 0.986 0.826 C04 RQK 9
RQK C06 C9 C 0 1 N N N 23.879 7.316 10.450 4.847 -0.597 -0.658 C06 RQK 10
RQK C07 C10 C 0 1 N N N 22.217 6.357 11.924 2.509 -1.014 0.199 C07 RQK 11
RQK C09 C11 C 0 1 N N N 21.845 5.957 13.345 2.115 -2.072 -0.736 C09 RQK 12
RQK C10 C12 C 0 1 N N N 22.651 5.299 14.234 2.926 -2.467 -1.725 C10 RQK 13
RQK C14 C13 C 0 1 N N S 18.484 6.661 14.941 -1.342 -2.733 0.614 C14 RQK 14
RQK C18 C14 C 0 1 N N N 17.986 8.878 13.742 -2.379 -0.592 0.840 C18 RQK 15
RQK C21 C15 C 0 1 N N R 18.272 11.155 14.825 -3.984 0.376 -0.820 C21 RQK 16
RQK C23 C16 C 0 1 N N N 16.801 11.587 14.661 -5.360 0.961 -0.629 C23 RQK 17
RQK C27 C17 C 0 1 N N N 20.080 9.445 16.842 -2.685 2.955 -0.547 C27 RQK 18
RQK C28 C18 C 0 1 N N N 20.797 9.296 14.387 -0.997 1.735 0.772 C28 RQK 19
RQK C31 C19 C 0 1 N N N 22.735 10.506 15.184 0.296 2.089 -1.357 C31 RQK 20
RQK C33 C20 C 0 1 N N N 24.080 7.865 13.962 2.656 1.910 0.447 C33 RQK 21
RQK N05 N2 N 0 1 N N N 23.516 6.906 11.639 3.642 -0.299 0.117 N05 RQK 22
RQK N11 N3 N 0 1 N N N 20.474 6.401 13.612 0.842 -2.655 -0.591 N11 RQK 23
RQK N16 N4 N 0 1 N N N 18.082 7.407 13.767 -1.852 -1.492 -0.045 N16 RQK 24
RQK N26 N5 N 0 1 N N N 19.746 9.443 15.415 -2.229 1.777 0.210 N26 RQK 25
RQK O08 O1 O 0 1 N N N 21.387 6.259 11.058 1.748 -0.725 1.112 O08 RQK 26
RQK O13 O2 O 0 1 N N N 20.457 5.669 15.720 0.761 -2.740 1.631 O13 RQK 27
RQK O17 O3 O 0 1 N N N 17.805 6.704 12.582 -1.744 -1.308 -1.448 O17 RQK 28
RQK O19 O4 O 0 1 N N N 17.612 9.440 12.772 -2.220 -0.787 2.043 O19 RQK 29
RQK O22 O5 O 0 1 N N N 18.892 11.682 13.688 -4.091 -1.032 -1.039 O22 RQK 30
RQK O25 O6 O 0 1 N N N 16.422 12.534 13.988 -6.328 0.231 -0.585 O25 RQK 31
RQK O29 O7 O 0 1 N N N 20.536 9.321 13.252 -0.901 1.270 1.905 O29 RQK 32
RQK O32 O8 O 0 1 N N N 22.968 8.681 13.706 1.397 1.529 0.710 O32 RQK 33
RQK O34 O9 O 0 1 N N N 24.544 7.775 15.068 2.891 2.975 -0.074 O34 RQK 34
RQK H152 H1 H 0 0 N N N 17.794 4.859 15.947 -1.416 -4.870 0.356 H152 RQK 35
RQK H153 H2 H 0 0 N N N 16.490 5.820 15.170 -2.916 -4.023 -0.091 H153 RQK 36
RQK H151 H3 H 0 0 N N N 17.601 4.832 14.162 -1.496 -3.942 -1.161 H151 RQK 37
RQK H201 H4 H 0 0 N N N 17.652 9.372 15.789 -3.851 0.879 1.245 H201 RQK 38
RQK H241 H5 H 0 0 N N N 14.879 11.055 15.281 -4.741 2.877 -0.542 H241 RQK 39
RQK H242 H6 H 0 0 N N N 16.140 10.043 15.903 -6.400 2.670 -0.383 H242 RQK 40
RQK H301 H7 H 0 0 N N N 22.319 8.441 15.672 0.403 3.311 0.420 H301 RQK 41
RQK H012 H8 H 0 0 N N N 26.896 8.827 9.830 7.432 1.647 -1.155 H012 RQK 42
RQK H011 H9 H 0 0 N N N 25.647 8.240 8.680 7.268 0.023 -1.865 H011 RQK 43
RQK H013 H10 H 0 0 N N N 25.244 9.531 9.863 6.049 1.273 -2.211 H013 RQK 44
RQK H021 H11 H 0 0 N N N 26.000 6.697 10.526 6.569 -0.018 0.505 H021 RQK 45
RQK H031 H12 H 0 0 N N N 26.480 8.069 12.544 5.666 2.020 1.222 H031 RQK 46
RQK H032 H13 H 0 0 N N N 25.040 9.104 12.255 4.972 2.358 -0.392 H032 RQK 47
RQK H041 H14 H 0 0 N N N 25.199 6.261 13.014 3.806 0.824 1.900 H041 RQK 48
RQK H061 H15 H 0 0 N N N 23.326 8.221 10.158 4.637 -0.442 -1.724 H061 RQK 49
RQK H062 H16 H 0 0 N N N 23.722 6.531 9.696 5.200 -1.619 -0.490 H062 RQK 50
RQK H102 H17 H 0 0 N N N 22.287 5.068 15.224 3.894 -2.004 -1.848 H102 RQK 51
RQK H101 H18 H 0 0 N N N 23.651 5.011 13.945 2.612 -3.250 -2.401 H101 RQK 52
RQK H141 H19 H 0 0 N N N 18.383 7.287 15.840 -1.655 -2.757 1.652 H141 RQK 53
RQK H211 H20 H 0 0 N N N 18.674 11.626 15.734 -3.508 0.843 -1.682 H211 RQK 54
RQK H272 H21 H 0 0 N N N 19.161 9.565 17.434 -3.127 3.679 0.138 H272 RQK 55
RQK H273 H22 H 0 0 N N N 20.565 8.494 17.106 -1.836 3.410 -1.058 H273 RQK 56
RQK H271 H23 H 0 0 N N N 20.766 10.278 17.057 -3.429 2.649 -1.282 H271 RQK 57
RQK H311 H24 H 0 0 N N N 22.175 10.873 16.057 -0.504 2.675 -1.808 H311 RQK 58
RQK H312 H25 H 0 0 N N N 23.806 10.460 15.429 1.257 2.428 -1.743 H312 RQK 59
RQK H313 H26 H 0 0 N N N 22.582 11.189 14.336 0.157 1.036 -1.603 H313 RQK 60
RQK H111 H27 H 0 0 N N N 19.964 6.884 12.901 0.430 -3.031 -1.413 H111 RQK 61
RQK H171 H28 H 0 0 N N N 17.554 7.317 11.901 -1.173 -0.570 -1.704 H171 RQK 62
RQK H221 H29 H 0 0 N N N 18.287 12.258 13.235 -4.864 -1.437 -0.623 H221 RQK 63
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RQK C01 C02 SING N N 1
RQK C06 C02 SING N N 2
RQK C06 N05 SING N N 3
RQK C02 C03 SING N N 4
RQK O08 C07 DOUB N N 5
RQK N05 C07 SING N N 6
RQK N05 C04 SING N N 7
RQK C07 C09 SING N N 8
RQK C03 C04 SING N N 9
RQK O17 N16 SING N N 10
RQK C04 C33 SING N N 11
RQK O19 C18 DOUB N N 12
RQK O29 C28 DOUB N N 13
RQK C09 N11 SING N N 14
RQK C09 C10 DOUB N N 15
RQK N11 C12 SING N N 16
RQK O22 C21 SING N N 17
RQK O32 C33 SING N N 18
RQK O32 C30 SING N N 19
RQK C18 N16 SING N N 20
RQK C18 C20 SING N N 21
RQK N16 C14 SING N N 22
RQK C33 O34 DOUB N N 23
RQK O25 C23 DOUB N N 24
RQK C28 C30 SING N N 25
RQK C28 N26 SING N N 26
RQK C23 C21 SING N N 27
RQK C23 N24 SING N N 28
RQK C30 C31 SING N N 29
RQK C21 C20 SING N N 30
RQK C12 C14 SING N N 31
RQK C12 O13 DOUB N N 32
RQK C14 C15 SING N N 33
RQK C20 N26 SING N N 34
RQK N26 C27 SING N N 35
RQK C15 H152 SING N N 36
RQK C15 H153 SING N N 37
RQK C15 H151 SING N N 38
RQK C20 H201 SING N N 39
RQK N24 H241 SING N N 40
RQK N24 H242 SING N N 41
RQK C30 H301 SING N N 42
RQK C01 H012 SING N N 43
RQK C01 H011 SING N N 44
RQK C01 H013 SING N N 45
RQK C02 H021 SING N N 46
RQK C03 H031 SING N N 47
RQK C03 H032 SING N N 48
RQK C04 H041 SING N N 49
RQK C06 H061 SING N N 50
RQK C06 H062 SING N N 51
RQK C10 H102 SING N N 52
RQK C10 H101 SING N N 53
RQK C14 H141 SING N N 54
RQK C21 H211 SING N N 55
RQK C27 H272 SING N N 56
RQK C27 H273 SING N N 57
RQK C27 H271 SING N N 58
RQK C31 H311 SING N N 59
RQK C31 H312 SING N N 60
RQK C31 H313 SING N N 61
RQK N11 H111 SING N N 62
RQK O17 H171 SING N N 63
RQK O22 H221 SING N N 64
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RQK InChI InChI 1.03 "InChI=1S/C20H29N5O9/c1-8-6-12-20(32)34-11(4)18(30)23(5)13(14(26)15(21)27)19(31)25(33)10(3)16(28)22-9(2)17(29)24(12)7-8/h8,10-14,26,33H,2,6-7H2,1,3-5H3,(H2,21,27)(H,22,28)/t8-,10-,11-,12-,13-,14+/m0/s1"
RQK InChIKey InChI 1.03 OPGOHWRVFNUNKK-GBIYJBALSA-N
RQK SMILES_CANONICAL CACTVS 3.385 "C[C@H]1C[C@@H]2N(C1)C(=O)C(=C)NC(=O)[C@H](C)N(O)C(=O)[C@H]([C@@H](O)C(N)=O)N(C)C(=O)[C@H](C)OC2=O"
RQK SMILES CACTVS 3.385 "C[CH]1C[CH]2N(C1)C(=O)C(=C)NC(=O)[CH](C)N(O)C(=O)[CH]([CH](O)C(N)=O)N(C)C(=O)[CH](C)OC2=O"
RQK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1C[C@H]2C(=O)O[C@H](C(=O)N([C@H](C(=O)N([C@H](C(=O)NC(=C)C(=O)N2C1)C)O)[C@H](C(=O)N)O)C)C"
RQK SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC2C(=O)OC(C(=O)N(C(C(=O)N(C(C(=O)NC(=C)C(=O)N2C1)C)O)C(C(=O)N)O)C)C"
#
_pdbx_chem_comp_identifier.comp_id RQK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{R})-2-oxidanyl-2-[(6~{S},9~{S},12~{S},15~{S},17~{S})-6,10,12,17-tetramethyl-3-methylidene-7-oxidanyl-2,5,8,11,14-pentakis(oxidanylidene)-13-oxa-1,4,7,10-tetrazabicyclo[13.3.0]octadecan-9-yl]ethanamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RQK "Create component" 2020-10-20 PDBE
RQK "Initial release" 2021-03-03 RCSB
##