data_RR1 # _chem_comp.id RR1 _chem_comp.name "5-(4,6-DIAMINO-[1,3,5]TRIAZIN-2-YLAMINO)-4-HYDROXY-3-(2-SULFO-PHENYLAZO)-NAPHTHALENE-2,7-DISULFONIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H16 N8 O10 S3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "REACTIVE RED 1 DYE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-03-07 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 612.573 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RR1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1I3U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RR1 O89 O89 O 0 1 N N N 26.342 17.267 56.443 3.292 0.895 -3.289 O89 RR1 1 RR1 O90 O90 O 0 1 N N N 26.854 19.433 57.123 3.758 -1.087 -4.455 O90 RR1 2 RR1 O92 O92 O 0 1 N N N 25.243 18.193 58.258 2.128 -0.996 -2.529 O92 RR1 3 RR1 S85 S85 S 0 1 N N N 25.811 18.464 56.988 2.733 -0.459 -3.698 S85 RR1 4 RR1 C10 C10 C 0 1 Y N N 24.493 19.163 55.843 1.414 -0.166 -4.828 C10 RR1 5 RR1 C11 C11 C 0 1 Y N N 23.195 19.440 56.336 1.667 -0.094 -6.182 C11 RR1 6 RR1 C12 C12 C 0 1 Y N N 22.207 19.964 55.470 0.632 0.135 -7.072 C12 RR1 7 RR1 C13 C13 C 0 1 Y N N 22.513 20.213 54.115 -0.663 0.289 -6.611 C13 RR1 8 RR1 C14 C14 C 0 1 Y N N 23.813 19.935 53.616 -0.932 0.214 -5.261 C14 RR1 9 RR1 C4 C4 C 0 1 Y N N 24.807 19.410 54.481 0.107 -0.017 -4.356 C4 RR1 10 RR1 C5 C5 C 0 1 Y N N 28.888 18.695 53.077 -0.572 -0.257 -0.351 C5 RR1 11 RR1 C3 C3 C 0 1 Y N N 27.772 18.917 52.257 -1.616 -0.025 -1.249 C3 RR1 12 RR1 C9 C9 C 0 1 Y N N 27.888 18.739 50.868 -2.935 0.131 -0.780 C9 RR1 13 RR1 C8 C8 C 0 1 Y N N 29.078 18.353 50.273 -3.216 0.060 0.544 C8 RR1 14 RR1 C7 C7 C 0 1 Y N N 30.202 18.123 51.071 -2.185 -0.172 1.476 C7 RR1 15 RR1 C6 C6 C 0 1 Y N N 30.117 18.288 52.485 -0.851 -0.327 1.024 C6 RR1 16 RR1 C15 C15 C 0 1 Y N N 31.204 18.030 53.261 0.174 -0.566 1.963 C15 RR1 17 RR1 C16 C16 C 0 1 Y N N 32.430 17.652 52.674 -0.138 -0.634 3.306 C16 RR1 18 RR1 C17 C17 C 0 1 Y N N 32.495 17.503 51.285 -1.450 -0.475 3.737 C17 RR1 19 RR1 C18 C18 C 0 1 Y N N 31.365 17.728 50.489 -2.460 -0.248 2.850 C18 RR1 20 RR1 O28 O28 O 0 1 N N N 28.761 18.861 54.423 0.696 -0.408 -0.802 O28 RR1 21 RR1 O37 O37 O 0 1 N N N 33.832 15.615 50.420 -1.693 0.838 6.026 O37 RR1 22 RR1 O38 O38 O 0 1 N N N 35.143 16.981 51.286 -3.192 -0.903 5.545 O38 RR1 23 RR1 O41 O41 O 0 1 N N N 34.088 17.421 49.127 -0.749 -1.310 6.038 O41 RR1 24 RR1 S36 S36 S 0 1 N N N 34.000 17.022 50.473 -1.813 -0.568 5.459 S36 RR1 25 RR1 O39 O39 O 0 1 N N N 25.834 20.304 50.050 -4.361 1.928 -2.106 O39 RR1 26 RR1 O40 O40 O 0 1 N N N 26.778 18.860 48.451 -3.770 -0.074 -3.177 O40 RR1 27 RR1 O42 O42 O 0 1 N N N 25.462 17.979 50.156 -5.430 0.010 -1.276 O42 RR1 28 RR1 S35 S35 S 0 1 N N N 26.392 19.001 49.803 -4.237 0.422 -1.930 S35 RR1 29 RR1 N1 N1 N 0 1 N N N 26.164 19.093 53.969 -0.151 -0.093 -3.016 N1 RR1 30 RR1 N2 N2 N 0 1 N N N 26.454 19.317 52.815 -1.358 0.049 -2.584 N2 RR1 31 RR1 N19 N19 N 0 1 N N N 30.992 18.165 54.694 1.491 -0.726 1.539 N19 RR1 32 RR1 C20 C20 C 0 1 Y N N 31.854 17.766 55.723 2.520 -0.118 2.234 C20 RR1 33 RR1 N21 N21 N 0 1 Y N N 31.415 18.000 57.021 3.782 -0.338 1.880 N21 RR1 34 RR1 C22 C22 C 0 1 Y N N 32.161 17.596 58.113 4.771 0.247 2.548 C22 RR1 35 RR1 N23 N23 N 0 1 Y N N 33.411 16.914 57.921 4.498 1.053 3.569 N23 RR1 36 RR1 C24 C24 C 0 1 Y N N 33.882 16.657 56.568 3.235 1.273 3.922 C24 RR1 37 RR1 N25 N25 N 0 1 Y N N 33.090 17.087 55.464 2.246 0.684 3.258 N25 RR1 38 RR1 NL1 NL1 N 0 1 N N N 35.069 15.972 56.337 2.951 2.110 4.983 NL1 RR1 39 RR1 NL2 NL2 N 0 1 N N N 31.682 17.862 59.382 6.082 0.017 2.182 NL2 RR1 40 RR1 H89 H89 H 0 1 N N N 25.649 16.623 56.353 4.014 0.724 -2.670 H89 RR1 41 RR1 H11 H11 H 0 1 N N N 22.953 19.247 57.394 2.675 -0.214 -6.549 H11 RR1 42 RR1 H12 H12 H 0 1 N N N 21.195 20.179 55.852 0.836 0.194 -8.131 H12 RR1 43 RR1 H13 H13 H 0 1 N N N 21.737 20.624 53.447 -1.466 0.468 -7.311 H13 RR1 44 RR1 H14 H14 H 0 1 N N N 24.050 20.126 52.556 -1.944 0.334 -4.903 H14 RR1 45 RR1 HC8 HC8 H 0 1 N N N 29.129 18.230 49.178 -4.233 0.182 0.885 HC8 RR1 46 RR1 H16 H16 H 0 1 N N N 33.325 17.475 53.292 0.643 -0.812 4.029 H16 RR1 47 RR1 H18 H18 H 0 1 N N N 31.391 17.593 49.394 -3.473 -0.127 3.205 H18 RR1 48 RR1 H28 H28 H 0 1 N N N 29.516 18.710 54.978 1.094 0.473 -0.817 H28 RR1 49 RR1 H37 H37 H 0 1 N N N 34.636 15.357 49.985 -1.894 0.777 6.970 H37 RR1 50 RR1 H39 H39 H 0 1 N N N 25.067 20.438 49.504 -5.077 2.078 -2.738 H39 RR1 51 RR1 H19 H19 H 0 1 N N N 30.097 17.715 54.888 1.687 -1.266 0.757 H19 RR1 52 RR1 HL11 1HL1 H 0 0 N N N 35.399 15.791 55.388 3.673 2.537 5.470 HL11 RR1 53 RR1 HL12 2HL1 H 0 0 N N N 35.019 15.079 56.828 2.030 2.274 5.238 HL12 RR1 54 RR1 HL21 1HL2 H 0 0 N N N 32.232 17.564 60.187 6.803 0.444 2.669 HL21 RR1 55 RR1 HL22 2HL2 H 0 0 N N N 30.740 17.478 59.466 6.281 -0.570 1.437 HL22 RR1 56 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RR1 O89 S85 SING N N 1 RR1 O89 H89 SING N N 2 RR1 O90 S85 DOUB N N 3 RR1 O92 S85 DOUB N N 4 RR1 S85 C10 SING N N 5 RR1 C10 C11 DOUB Y N 6 RR1 C10 C4 SING Y N 7 RR1 C11 C12 SING Y N 8 RR1 C11 H11 SING N N 9 RR1 C12 C13 DOUB Y N 10 RR1 C12 H12 SING N N 11 RR1 C13 C14 SING Y N 12 RR1 C13 H13 SING N N 13 RR1 C14 C4 DOUB Y N 14 RR1 C14 H14 SING N N 15 RR1 C4 N1 SING N N 16 RR1 C5 C3 DOUB Y N 17 RR1 C5 C6 SING Y N 18 RR1 C5 O28 SING N N 19 RR1 C3 C9 SING Y N 20 RR1 C3 N2 SING N N 21 RR1 C9 C8 DOUB Y N 22 RR1 C9 S35 SING N N 23 RR1 C8 C7 SING Y N 24 RR1 C8 HC8 SING N N 25 RR1 C7 C6 DOUB Y N 26 RR1 C7 C18 SING Y N 27 RR1 C6 C15 SING Y N 28 RR1 C15 C16 DOUB Y N 29 RR1 C15 N19 SING N N 30 RR1 C16 C17 SING Y N 31 RR1 C16 H16 SING N N 32 RR1 C17 C18 DOUB Y N 33 RR1 C17 S36 SING N N 34 RR1 C18 H18 SING N N 35 RR1 O28 H28 SING N N 36 RR1 O37 S36 SING N N 37 RR1 O37 H37 SING N N 38 RR1 O38 S36 DOUB N N 39 RR1 O41 S36 DOUB N N 40 RR1 O39 S35 SING N N 41 RR1 O39 H39 SING N N 42 RR1 O40 S35 DOUB N N 43 RR1 O42 S35 DOUB N N 44 RR1 N1 N2 DOUB N E 45 RR1 N19 C20 SING N N 46 RR1 N19 H19 SING N N 47 RR1 C20 N21 DOUB Y N 48 RR1 C20 N25 SING Y N 49 RR1 N21 C22 SING Y N 50 RR1 C22 N23 DOUB Y N 51 RR1 C22 NL2 SING N N 52 RR1 N23 C24 SING Y N 53 RR1 C24 N25 DOUB Y N 54 RR1 C24 NL1 SING N N 55 RR1 NL1 HL11 SING N N 56 RR1 NL1 HL12 SING N N 57 RR1 NL2 HL21 SING N N 58 RR1 NL2 HL22 SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RR1 SMILES ACDLabs 10.04 "O=S(=O)(O)c4ccccc4/N=N/c2c(O)c1c(cc(cc1cc2S(=O)(=O)O)S(=O)(=O)O)Nc3nc(nc(n3)N)N" RR1 SMILES_CANONICAL CACTVS 3.341 "Nc1nc(N)nc(Nc2cc(cc3cc(c(N=Nc4ccccc4[S](O)(=O)=O)c(O)c23)[S](O)(=O)=O)[S](O)(=O)=O)n1" RR1 SMILES CACTVS 3.341 "Nc1nc(N)nc(Nc2cc(cc3cc(c(N=Nc4ccccc4[S](O)(=O)=O)c(O)c23)[S](O)(=O)=O)[S](O)(=O)=O)n1" RR1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(c(c1)/N=N/c2c(cc3cc(cc(c3c2O)Nc4nc(nc(n4)N)N)S(=O)(=O)O)S(=O)(=O)O)S(=O)(=O)O" RR1 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(c(c1)N=Nc2c(cc3cc(cc(c3c2O)Nc4nc(nc(n4)N)N)S(=O)(=O)O)S(=O)(=O)O)S(=O)(=O)O" RR1 InChI InChI 1.03 "InChI=1S/C19H16N8O10S3/c20-17-23-18(21)25-19(24-17)22-11-7-9(38(29,30)31)5-8-6-13(40(35,36)37)15(16(28)14(8)11)27-26-10-3-1-2-4-12(10)39(32,33)34/h1-7,28H,(H,29,30,31)(H,32,33,34)(H,35,36,37)(H5,20,21,22,23,24,25)/b27-26+" RR1 InChIKey InChI 1.03 LOCFSBZWHQIILX-CYYJNZCTSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RR1 "SYSTEMATIC NAME" ACDLabs 10.04 "5-[(4,6-diamino-1,3,5-triazin-2-yl)amino]-4-hydroxy-3-[(E)-(2-sulfophenyl)diazenyl]naphthalene-2,7-disulfonic acid" RR1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-[(4,6-diamino-1,3,5-triazin-2-yl)amino]-4-hydroxy-3-(2-sulfophenyl)diazenyl-naphthalene-2,7-disulfonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RR1 "Create component" 2001-03-07 RCSB RR1 "Modify descriptor" 2011-06-04 RCSB RR1 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RR1 _pdbx_chem_comp_synonyms.name "REACTIVE RED 1 DYE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##