data_RR7 # _chem_comp.id RR7 _chem_comp.name 2-deoxy-beta-D-arabino-hexopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 2-deoxy-alpha-D-glucopyranose _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-02-24 _chem_comp.pdbx_modified_date 2021-02-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 164.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RR7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BYD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RR7 _pdbx_chem_comp_synonyms.name 2-deoxy-alpha-D-glucopyranose _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RR7 C1 C1 C 0 1 N N R 0.039 33.775 24.774 -0.523 1.666 0.342 C1 RR7 1 RR7 C2 C2 C 0 1 N N N -0.852 32.694 24.341 -1.725 0.845 -0.134 C2 RR7 2 RR7 C3 C3 C 0 1 N N R -0.028 31.464 24.195 -1.546 -0.611 0.307 C3 RR7 3 RR7 C4 C4 C 0 1 N N S 1.064 31.660 23.104 -0.222 -1.143 -0.250 C4 RR7 4 RR7 C5 C5 C 0 1 N N R 2.055 32.570 23.854 0.922 -0.246 0.230 C5 RR7 5 RR7 C6 C6 C 0 1 N N N 3.055 33.000 22.805 2.241 -0.735 -0.371 C6 RR7 6 RR7 O1 O1 O 0 1 N N N -0.666 34.965 24.497 -0.655 3.013 -0.115 O1 RR7 7 RR7 O3 O3 O 0 1 N N N -0.898 30.357 24.021 -2.627 -1.398 -0.196 O3 RR7 8 RR7 O4 O4 O 0 1 N N N 1.769 30.434 22.792 -0.010 -2.477 0.215 O4 RR7 9 RR7 O5 O5 O 0 1 N N N 1.327 33.794 24.145 0.678 1.099 -0.187 O5 RR7 10 RR7 O6 O6 O 0 1 N N N 2.424 33.823 21.839 3.322 0.028 0.168 O6 RR7 11 RR7 H1 H1 H 0 1 N N N 0.180 33.689 25.861 -0.482 1.653 1.431 H1 RR7 12 RR7 H21 H21 H 0 1 N N N -1.638 32.532 25.093 -2.638 1.249 0.304 H21 RR7 13 RR7 H22 H22 H 0 1 N N N -1.314 32.952 23.377 -1.790 0.891 -1.221 H22 RR7 14 RR7 H3 H3 H 0 1 N N N 0.509 31.323 25.145 -1.532 -0.663 1.396 H3 RR7 15 RR7 H4 H4 H 0 1 N N N 0.654 32.158 22.213 -0.257 -1.137 -1.339 H4 RR7 16 RR7 H5 H5 H 0 1 N N N 2.512 32.086 24.730 0.982 -0.284 1.318 H5 RR7 17 RR7 H61 H61 H 0 1 N N N 3.868 33.562 23.287 2.382 -1.788 -0.127 H61 RR7 18 RR7 H62 H62 H 0 1 N N N 3.468 32.109 22.310 2.214 -0.613 -1.454 H62 RR7 19 RR7 HO1 HO1 H 0 1 N N N -0.140 35.713 24.756 0.073 3.592 0.151 HO1 RR7 20 RR7 HO3 HO3 H 0 1 N N N -0.386 29.563 23.926 -3.498 -1.113 0.112 HO3 RR7 21 RR7 HO4 HO4 H 0 1 N Y N 2.422 30.605 22.124 -0.701 -3.100 -0.049 HO4 RR7 22 RR7 HO6 HO6 H 0 1 N N N 3.059 34.088 21.184 4.191 -0.228 -0.170 HO6 RR7 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RR7 O4 C4 SING N N 1 RR7 C1 C2 SING N N 2 RR7 C1 O1 SING N N 3 RR7 C1 O5 SING N N 4 RR7 C2 C3 SING N N 5 RR7 C3 O3 SING N N 6 RR7 C3 C4 SING N N 7 RR7 C4 C5 SING N N 8 RR7 C5 C6 SING N N 9 RR7 C5 O5 SING N N 10 RR7 C6 O6 SING N N 11 RR7 C1 H1 SING N N 12 RR7 C2 H21 SING N N 13 RR7 C2 H22 SING N N 14 RR7 C3 H3 SING N N 15 RR7 C4 H4 SING N N 16 RR7 C5 H5 SING N N 17 RR7 C6 H61 SING N N 18 RR7 C6 H62 SING N N 19 RR7 O1 HO1 SING N N 20 RR7 O3 HO3 SING N N 21 RR7 O6 HO6 SING N N 22 RR7 O4 HO4 SING N N 23 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RR7 SMILES ACDLabs 12.01 "C1(CC(O)C(C(CO)O1)O)O" RR7 InChI InChI 1.03 "InChI=1S/C6H12O5/c7-2-4-6(10)3(8)1-5(9)11-4/h3-10H,1-2H2/t3-,4-,5-,6+/m1/s1" RR7 InChIKey InChI 1.03 PMMURAAUARKVCB-KAZBKCHUSA-N RR7 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](O)C[C@@H](O)[C@@H]1O" RR7 SMILES CACTVS 3.385 "OC[CH]1O[CH](O)C[CH](O)[CH]1O" RR7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O)O" RR7 SMILES "OpenEye OEToolkits" 1.7.6 "C1C(C(C(OC1O)CO)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RR7 "SYSTEMATIC NAME" ACDLabs 12.01 2-deoxy-beta-D-arabino-hexopyranose RR7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,4R,5S,6R)-6-(hydroxymethyl)oxane-2,4,5-triol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support RR7 "CARBOHYDRATE ISOMER" D PDB ? RR7 "CARBOHYDRATE RING" pyranose PDB ? RR7 "CARBOHYDRATE ANOMER" beta PDB ? RR7 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RR7 "Create component" 2020-02-24 RCSB RR7 "Other modification" 2020-06-10 RCSB RR7 "Initial release" 2020-07-29 RCSB RR7 "Other modification" 2021-02-23 RCSB ##