data_RSN # _chem_comp.id RSN _chem_comp.name "(3~{S})-3-azanyl-4-[[(2~{R},3~{S},4~{R},5~{R})-5-[7-azanyl-5-(hydroxymethyl)benzimidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxysulfonylamino]-4-oxidanylidene-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H23 N5 O10 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-20 _chem_comp.pdbx_modified_date 2020-12-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 489.457 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RSN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AP4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RSN C1 C1 C 0 1 Y N N -41.228 -24.246 -13.457 6.134 -0.536 0.474 C1 RSN 1 RSN C2 C2 C 0 1 Y N N -41.113 -24.201 -12.071 6.181 -1.875 0.113 C2 RSN 2 RSN C3 C3 C 0 1 Y N N -42.131 -23.621 -11.319 5.061 -2.517 -0.333 C3 RSN 3 RSN C4 C4 C 0 1 Y N N -43.240 -23.086 -11.963 3.849 -1.825 -0.430 C4 RSN 4 RSN C5 C5 C 0 1 Y N N -43.337 -23.133 -13.356 3.795 -0.471 -0.067 C5 RSN 5 RSN C6 C6 C 0 1 Y N N -42.333 -23.729 -14.144 4.945 0.169 0.392 C6 RSN 6 RSN N6 N1 N 0 1 N N N -42.384 -23.795 -15.541 4.902 1.518 0.756 N6 RSN 7 RSN N N2 N 0 1 N N N -49.247 -14.764 -11.833 -3.287 -2.910 0.475 N RSN 8 RSN CA C7 C 0 1 N N S -49.839 -15.821 -12.648 -4.078 -1.826 -0.122 CA RSN 9 RSN C C8 C 0 1 N N N -48.897 -16.999 -12.463 -3.765 -0.530 0.581 C RSN 10 RSN O O1 O 0 1 N N N -47.728 -16.871 -12.087 -3.266 -0.544 1.686 O RSN 11 RSN CB C9 C 0 1 N N N -50.013 -15.482 -14.128 -5.568 -2.140 0.028 CB RSN 12 RSN CG C10 C 0 1 N N N -51.212 -14.588 -14.427 -5.906 -3.369 -0.776 CG RSN 13 RSN OD1 O2 O 0 1 N N N -51.106 -13.733 -15.340 -5.043 -3.936 -1.404 OD1 RSN 14 RSN OD2 O3 O 0 1 N N N -52.240 -14.775 -13.745 -7.165 -3.834 -0.794 OD2 RSN 15 RSN "C1'" C11 C 0 1 N N R -45.009 -22.124 -15.006 1.939 1.264 -0.028 "C1'" RSN 16 RSN "C2'" C12 C 0 1 N N R -46.159 -22.994 -15.535 2.065 2.134 -1.299 "C2'" RSN 17 RSN C2M C13 C 0 1 N N N -39.905 -24.798 -11.390 7.482 -2.629 0.213 C2M RSN 18 RSN "C3'" C14 C 0 1 N N S -47.372 -22.066 -15.376 0.768 2.974 -1.309 "C3'" RSN 19 RSN "C4'" C15 C 0 1 N N R -46.761 -20.695 -15.592 0.013 2.512 -0.043 "C4'" RSN 20 RSN "C5'" C16 C 0 1 N N N -47.542 -19.571 -14.974 -1.493 2.461 -0.310 "C5'" RSN 21 RSN C8 C17 C 0 1 Y N N -45.065 -22.112 -12.477 1.804 -1.153 -0.732 C8 RSN 22 RSN N3S N3 N 0 1 N N N -49.440 -18.306 -12.745 -4.039 0.645 -0.020 N3S RSN 23 RSN N7 N4 N 0 1 Y N N -44.513 -22.481 -13.678 2.487 -0.073 -0.269 N7 RSN 24 RSN N9 N5 N 0 1 Y N N -44.350 -22.435 -11.433 2.599 -2.178 -0.827 N9 RSN 25 RSN O1S O4 O 0 1 N N N -48.197 -19.727 -11.261 -4.063 3.110 -0.143 O1S RSN 26 RSN "O2'" O5 O 0 1 N N N -45.890 -23.314 -16.893 3.211 2.983 -1.213 "O2'" RSN 27 RSN O2M O6 O 0 1 N N N -40.153 -25.168 -10.041 7.592 -3.219 1.510 O2M RSN 28 RSN O2S O7 O 0 1 N N N -49.521 -20.702 -13.121 -4.222 1.951 2.066 O2S RSN 29 RSN "O3'" O8 O 0 1 N N N -48.406 -22.234 -16.334 1.074 4.367 -1.233 "O3'" RSN 30 RSN "O4'" O9 O 0 1 N N N -45.473 -20.783 -14.960 0.520 1.188 0.228 "O4'" RSN 31 RSN "O5'" O10 O 0 1 N N N -47.375 -19.704 -13.528 -2.182 2.147 0.902 "O5'" RSN 32 RSN S S1 S 0 1 N N N -48.666 -19.694 -12.602 -3.694 2.069 0.752 S RSN 33 RSN H1 H1 H 0 1 N N N -40.431 -24.699 -14.027 7.028 -0.043 0.825 H1 RSN 34 RSN H2 H2 H 0 1 N N N -42.059 -23.587 -10.242 5.111 -3.560 -0.611 H2 RSN 35 RSN H3 H3 H 0 1 N N N -43.236 -23.383 -15.864 5.677 1.936 1.163 H3 RSN 36 RSN H4 H4 H 0 1 N N N -41.606 -23.298 -15.927 4.096 2.036 0.603 H4 RSN 37 RSN H5 H5 H 0 1 N N N -49.173 -15.075 -10.885 -3.498 -3.014 1.456 H5 RSN 38 RSN H6 H6 H 0 1 N N N -48.337 -14.543 -12.183 -3.430 -3.777 -0.020 H6 RSN 39 RSN H8 H8 H 0 1 N N N -50.822 -16.091 -12.235 -3.831 -1.735 -1.180 H8 RSN 40 RSN H9 H9 H 0 1 N N N -50.136 -16.422 -14.685 -5.798 -2.318 1.079 H9 RSN 41 RSN H10 H10 H 0 1 N N N -49.104 -14.967 -14.473 -6.156 -1.296 -0.334 H10 RSN 42 RSN H11 H11 H 0 1 N N N -52.920 -14.174 -14.025 -7.333 -4.626 -1.324 H11 RSN 43 RSN H12 H12 H 0 1 N N N -44.178 -22.195 -15.723 2.451 1.738 0.810 H12 RSN 44 RSN H13 H13 H 0 1 N N N -46.279 -23.893 -14.912 2.120 1.505 -2.188 H13 RSN 45 RSN H14 H14 H 0 1 N N N -39.596 -25.694 -11.948 7.508 -3.411 -0.545 H14 RSN 46 RSN H15 H15 H 0 1 N N N -39.092 -24.057 -11.406 8.313 -1.942 0.055 H15 RSN 47 RSN H16 H16 H 0 1 N N N -47.763 -22.143 -14.351 0.182 2.760 -2.203 H16 RSN 48 RSN H17 H17 H 0 1 N N N -46.647 -20.513 -16.671 0.227 3.180 0.791 H17 RSN 49 RSN H18 H18 H 0 1 N N N -47.150 -18.602 -15.315 -1.830 3.431 -0.678 H18 RSN 50 RSN H19 H19 H 0 1 N N N -48.605 -19.652 -15.244 -1.704 1.696 -1.057 H19 RSN 51 RSN H20 H20 H 0 1 N N N -46.012 -21.597 -12.402 0.753 -1.159 -0.985 H20 RSN 52 RSN H21 H21 H 0 1 N N N -50.389 -18.345 -13.059 -4.438 0.657 -0.904 H21 RSN 53 RSN H22 H22 H 0 1 N N N -45.134 -23.888 -16.940 3.305 3.593 -1.957 H22 RSN 54 RSN H23 H23 H 0 1 N N N -39.363 -25.536 -9.663 8.407 -3.721 1.646 H23 RSN 55 RSN H24 H24 H 0 1 N N N -48.807 -23.088 -16.221 1.599 4.696 -1.975 H24 RSN 56 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RSN "O2'" "C2'" SING N N 1 RSN "O3'" "C3'" SING N N 2 RSN "C4'" "C3'" SING N N 3 RSN "C4'" "C5'" SING N N 4 RSN "C4'" "O4'" SING N N 5 RSN N6 C6 SING N N 6 RSN "C2'" "C3'" SING N N 7 RSN "C2'" "C1'" SING N N 8 RSN OD1 CG DOUB N N 9 RSN "C1'" "O4'" SING N N 10 RSN "C1'" N7 SING N N 11 RSN "C5'" "O5'" SING N N 12 RSN CG CB SING N N 13 RSN CG OD2 SING N N 14 RSN C6 C1 DOUB Y N 15 RSN C6 C5 SING Y N 16 RSN CB CA SING N N 17 RSN N7 C5 SING Y N 18 RSN N7 C8 SING Y N 19 RSN "O5'" S SING N N 20 RSN C1 C2 SING Y N 21 RSN C5 C4 DOUB Y N 22 RSN O2S S DOUB N N 23 RSN N3S S SING N N 24 RSN N3S C SING N N 25 RSN CA C SING N N 26 RSN CA N SING N N 27 RSN S O1S DOUB N N 28 RSN C8 N9 DOUB Y N 29 RSN C O DOUB N N 30 RSN C2 C2M SING N N 31 RSN C2 C3 DOUB Y N 32 RSN C4 N9 SING Y N 33 RSN C4 C3 SING Y N 34 RSN C2M O2M SING N N 35 RSN C1 H1 SING N N 36 RSN C3 H2 SING N N 37 RSN N6 H3 SING N N 38 RSN N6 H4 SING N N 39 RSN N H5 SING N N 40 RSN N H6 SING N N 41 RSN CA H8 SING N N 42 RSN CB H9 SING N N 43 RSN CB H10 SING N N 44 RSN OD2 H11 SING N N 45 RSN "C1'" H12 SING N N 46 RSN "C2'" H13 SING N N 47 RSN C2M H14 SING N N 48 RSN C2M H15 SING N N 49 RSN "C3'" H16 SING N N 50 RSN "C4'" H17 SING N N 51 RSN "C5'" H18 SING N N 52 RSN "C5'" H19 SING N N 53 RSN C8 H20 SING N N 54 RSN N3S H21 SING N N 55 RSN "O2'" H22 SING N N 56 RSN O2M H23 SING N N 57 RSN "O3'" H24 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RSN InChI InChI 1.03 "InChI=1S/C17H23N5O10S/c18-8-1-7(4-23)2-10-13(8)22(6-20-10)17-15(27)14(26)11(32-17)5-31-33(29,30)21-16(28)9(19)3-12(24)25/h1-2,6,9,11,14-15,17,23,26-27H,3-5,18-19H2,(H,21,28)(H,24,25)/t9-,11+,14+,15+,17+/m0/s1" RSN InChIKey InChI 1.03 NPTGVUDUYJMSLG-OULBZCFASA-N RSN SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CC(O)=O)C(=O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3cc(CO)cc(N)c23" RSN SMILES CACTVS 3.385 "N[CH](CC(O)=O)C(=O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3cc(CO)cc(N)c23" RSN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc2c(c1N)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COS(=O)(=O)NC(=O)[C@H](CC(=O)O)N)O)O)CO" RSN SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc2c(c1N)n(cn2)C3C(C(C(O3)COS(=O)(=O)NC(=O)C(CC(=O)O)N)O)O)CO" # _pdbx_chem_comp_identifier.comp_id RSN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S})-3-azanyl-4-[[(2~{R},3~{S},4~{R},5~{R})-5-[7-azanyl-5-(hydroxymethyl)benzimidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxysulfonylamino]-4-oxidanylidene-butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RSN "Create component" 2020-10-20 PDBE RSN "Initial release" 2020-12-09 RCSB ##