data_RT5 # _chem_comp.id RT5 _chem_comp.name "(8S)-6-(2-amino-7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)-8-fluoro-6-azaspiro[3.4]octane-8-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H17 F2 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-23 _chem_comp.pdbx_modified_date 2022-07-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 373.357 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RT5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5SSO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RT5 C1 C1 C 0 1 Y N N -49.593 -28.906 0.827 -0.881 3.448 -0.065 C1 RT5 1 RT5 C2 C2 C 0 1 Y N N -49.845 -28.739 3.065 -2.598 1.904 -0.057 C2 RT5 2 RT5 C3 C3 C 0 1 Y N N -48.443 -28.882 3.281 -1.641 0.878 0.002 C3 RT5 3 RT5 O1 O1 O 0 1 N N N -43.843 -33.064 2.860 2.654 -1.988 -1.997 O1 RT5 4 RT5 O2 O2 O 0 1 N N N -42.972 -31.237 3.620 4.695 -1.801 -1.172 O2 RT5 5 RT5 C10 C4 C 0 1 Y N N -47.640 -29.030 2.106 -0.283 1.219 0.026 C10 RT5 6 RT5 C11 C5 C 0 1 N N N -45.473 -29.161 0.882 1.571 0.431 1.267 C11 RT5 7 RT5 C12 C6 C 0 1 N N N -44.605 -30.419 0.993 2.847 -0.336 0.881 C12 RT5 8 RT5 C13 C7 C 0 1 N N S -44.966 -31.083 2.339 2.990 -0.101 -0.628 C13 RT5 9 RT5 C14 C8 C 0 1 N N N -45.567 -29.934 3.138 1.577 0.300 -1.100 C14 RT5 10 RT5 C15 C9 C 0 1 N N N -43.817 -31.853 2.996 3.434 -1.366 -1.316 C15 RT5 11 RT5 C16 C10 C 0 1 N N N -43.080 -30.316 0.676 2.920 -1.786 1.345 C16 RT5 12 RT5 C17 C11 C 0 1 N N N -43.187 -31.651 -0.066 3.669 -1.258 2.583 C17 RT5 13 RT5 C18 C12 C 0 1 N N N -44.679 -31.391 -0.225 4.082 -0.046 1.727 C18 RT5 14 RT5 C4 C13 C 0 1 Y N N -48.250 -28.812 4.717 -2.386 -0.390 0.026 C4 RT5 15 RT5 C5 C14 C 0 1 Y N N -49.533 -28.645 5.283 -3.747 -0.048 -0.021 C5 RT5 16 RT5 C6 C15 C 0 1 Y N N -49.710 -28.546 6.659 -4.704 -1.057 -0.012 C6 RT5 17 RT5 C7 C16 C 0 1 Y N N -48.597 -28.606 7.455 -4.313 -2.380 0.043 C7 RT5 18 RT5 C8 C17 C 0 1 Y N N -47.321 -28.764 6.938 -2.967 -2.716 0.089 C8 RT5 19 RT5 C9 C18 C 0 1 Y N N -47.143 -28.856 5.575 -2.005 -1.729 0.081 C9 RT5 20 RT5 F1 F1 F 0 1 N N N -48.744 -28.510 8.807 -5.248 -3.355 0.051 F1 RT5 21 RT5 F2 F2 F 0 1 N N N -45.916 -32.006 2.085 3.900 0.932 -0.876 F2 RT5 22 RT5 N1 N1 N 0 1 N N N -50.129 -28.919 -0.411 -0.487 4.775 -0.106 N1 RT5 23 RT5 N2 N2 N 0 1 Y N N -50.437 -28.749 1.862 -2.174 3.167 -0.089 N2 RT5 24 RT5 N3 N3 N 0 1 Y N N -50.475 -28.598 4.267 -3.847 1.333 -0.070 N3 RT5 25 RT5 N4 N4 N 0 1 N N N -46.311 -29.260 2.082 0.690 0.238 0.084 N4 RT5 26 RT5 N5 N5 N 0 1 Y N N -48.243 -29.061 0.911 0.050 2.507 -0.009 N5 RT5 27 RT5 H17 H1 H 0 1 N N N -42.339 -31.846 3.983 4.933 -2.618 -1.633 H17 RT5 28 RT5 H8 H2 H 0 1 N N N -44.858 -28.249 0.898 1.118 -0.002 2.159 H8 RT5 29 RT5 H7 H3 H 0 1 N N N -46.083 -29.176 -0.033 1.788 1.488 1.418 H7 RT5 30 RT5 H9 H4 H 0 1 N N N -44.790 -29.285 3.569 1.592 1.314 -1.499 H9 RT5 31 RT5 H10 H5 H 0 1 N N N -46.229 -30.295 3.939 1.230 -0.395 -1.864 H10 RT5 32 RT5 H12 H6 H 0 1 N N N -42.428 -30.339 1.562 1.948 -2.222 1.575 H12 RT5 33 RT5 H11 H7 H 0 1 N N N -42.804 -29.462 0.040 3.528 -2.422 0.702 H11 RT5 34 RT5 H13 H8 H 0 1 N N N -42.941 -32.532 0.544 3.011 -1.002 3.414 H13 RT5 35 RT5 H14 H9 H 0 1 N N N -42.628 -31.692 -1.013 4.507 -1.885 2.886 H14 RT5 36 RT5 H16 H10 H 0 1 N N N -44.957 -30.909 -1.174 5.021 -0.187 1.193 H16 RT5 37 RT5 H15 H11 H 0 1 N N N -45.314 -32.275 -0.063 4.034 0.903 2.261 H15 RT5 38 RT5 H4 H12 H 0 1 N N N -50.694 -28.426 7.087 -5.753 -0.805 -0.047 H4 RT5 39 RT5 H5 H13 H 0 1 N N N -46.470 -28.815 7.601 -2.672 -3.754 0.132 H5 RT5 40 RT5 H6 H14 H 0 1 N N N -46.149 -28.962 5.167 -0.959 -1.993 0.117 H6 RT5 41 RT5 H2 H15 H 0 1 N N N -49.404 -29.047 -1.087 0.456 5.001 -0.093 H2 RT5 42 RT5 H1 H16 H 0 1 N N N -50.787 -29.669 -0.482 -1.153 5.478 -0.147 H1 RT5 43 RT5 H3 H17 H 0 1 N N N -51.460 -28.480 4.395 -4.681 1.827 -0.108 H3 RT5 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RT5 N1 C1 SING N N 1 RT5 C18 C17 SING N N 2 RT5 C18 C12 SING N N 3 RT5 C17 C16 SING N N 4 RT5 C16 C12 SING N N 5 RT5 C1 N5 DOUB Y N 6 RT5 C1 N2 SING Y N 7 RT5 C11 C12 SING N N 8 RT5 C11 N4 SING N N 9 RT5 N5 C10 SING Y N 10 RT5 C12 C13 SING N N 11 RT5 N2 C2 DOUB Y N 12 RT5 N4 C10 SING N N 13 RT5 N4 C14 SING N N 14 RT5 F2 C13 SING N N 15 RT5 C10 C3 DOUB Y N 16 RT5 C13 C15 SING N N 17 RT5 C13 C14 SING N N 18 RT5 O1 C15 DOUB N N 19 RT5 C15 O2 SING N N 20 RT5 C2 C3 SING Y N 21 RT5 C2 N3 SING Y N 22 RT5 C3 C4 SING Y N 23 RT5 N3 C5 SING Y N 24 RT5 C4 C5 DOUB Y N 25 RT5 C4 C9 SING Y N 26 RT5 C5 C6 SING Y N 27 RT5 C9 C8 DOUB Y N 28 RT5 C6 C7 DOUB Y N 29 RT5 C8 C7 SING Y N 30 RT5 C7 F1 SING N N 31 RT5 O2 H17 SING N N 32 RT5 C11 H8 SING N N 33 RT5 C11 H7 SING N N 34 RT5 C14 H9 SING N N 35 RT5 C14 H10 SING N N 36 RT5 C16 H12 SING N N 37 RT5 C16 H11 SING N N 38 RT5 C17 H13 SING N N 39 RT5 C17 H14 SING N N 40 RT5 C18 H16 SING N N 41 RT5 C18 H15 SING N N 42 RT5 C6 H4 SING N N 43 RT5 C8 H5 SING N N 44 RT5 C9 H6 SING N N 45 RT5 N1 H2 SING N N 46 RT5 N1 H1 SING N N 47 RT5 N3 H3 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RT5 SMILES ACDLabs 12.01 "O=C(O)C1(F)CN(CC21CCC2)c1nc(N)nc2[NH]c3cc(F)ccc3c12" RT5 InChI InChI 1.06 "InChI=1S/C18H17F2N5O2/c19-9-2-3-10-11(6-9)22-13-12(10)14(24-16(21)23-13)25-7-17(4-1-5-17)18(20,8-25)15(26)27/h2-3,6H,1,4-5,7-8H2,(H,26,27)(H3,21,22,23,24)/t18-/m0/s1" RT5 InChIKey InChI 1.06 CDBGIGRGQZLBAF-SFHVURJKSA-N RT5 SMILES_CANONICAL CACTVS 3.385 "Nc1nc2[nH]c3cc(F)ccc3c2c(n1)N4CC5(CCC5)[C@](F)(C4)C(O)=O" RT5 SMILES CACTVS 3.385 "Nc1nc2[nH]c3cc(F)ccc3c2c(n1)N4CC5(CCC5)[C](F)(C4)C(O)=O" RT5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1F)[nH]c3c2c(nc(n3)N)N4C[C@@](C5(C4)CCC5)(C(=O)O)F" RT5 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1F)[nH]c3c2c(nc(n3)N)N4CC5(CCC5)C(C4)(C(=O)O)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RT5 "SYSTEMATIC NAME" ACDLabs 12.01 "(8S)-6-(2-amino-7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)-8-fluoro-6-azaspiro[3.4]octane-8-carboxylic acid" RT5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(8~{S})-6-(2-azanyl-7-fluoranyl-9~{H}-pyrimido[4,5-b]indol-4-yl)-8-fluoranyl-6-azaspiro[3.4]octane-8-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RT5 "Create component" 2022-06-23 RCSB RT5 "Initial release" 2022-07-06 RCSB #