data_RTL
#
_chem_comp.id RTL
_chem_comp.name RETINOL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H30 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2020-09-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 286.452
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RTL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1AQB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RTL C1 C1 C 0 1 N N N 0.507 4.585 -7.709 -4.435 0.902 -0.408 C1 RTL 1
RTL C2 C2 C 0 1 N N N 0.780 6.020 -8.208 -5.583 0.142 -1.075 C2 RTL 2
RTL C3 C3 C 0 1 N N N -0.086 7.022 -7.465 -6.084 -0.934 -0.103 C3 RTL 3
RTL C4 C4 C 0 1 N N N -0.682 7.049 -6.069 -4.993 -1.997 0.049 C4 RTL 4
RTL C5 C5 C 0 1 N N N -0.603 5.593 -5.622 -3.675 -1.345 0.349 C5 RTL 5
RTL C6 C6 C 0 1 N N N -0.146 4.500 -6.320 -3.427 -0.064 0.143 C6 RTL 6
RTL C7 C7 C 0 1 N N N -0.288 3.138 -5.805 -2.095 0.442 0.470 C7 RTL 7
RTL C8 C8 C 0 1 N N N -1.467 2.550 -5.517 -0.998 -0.125 -0.091 C8 RTL 8
RTL C9 C9 C 0 1 N N N -1.531 1.175 -5.043 0.288 0.334 0.257 C9 RTL 9
RTL C10 C10 C 0 1 N N N -2.732 0.697 -4.592 1.388 -0.234 -0.306 C10 RTL 10
RTL C11 C11 C 0 1 N N N -3.071 -0.664 -4.129 2.674 0.225 0.042 C11 RTL 11
RTL C12 C12 C 0 1 N N N -4.419 -0.846 -4.040 3.772 -0.341 -0.519 C12 RTL 12
RTL C13 C13 C 0 1 N N N -5.257 -2.000 -3.734 5.106 0.135 -0.158 C13 RTL 13
RTL C14 C14 C 0 1 N N N -6.485 -2.094 -3.147 6.186 -0.423 -0.711 C14 RTL 14
RTL C15 C15 C 0 1 N N N -6.895 -3.403 -2.612 7.561 0.068 -0.338 C15 RTL 15
RTL O1 O1 O 0 1 N N N -7.316 -3.327 -1.315 8.418 -1.051 -0.102 O1 RTL 16
RTL C16 C16 C 0 1 N N N 1.944 4.031 -7.690 -4.989 1.762 0.730 C16 RTL 17
RTL C17 C17 C 0 1 N N N -0.274 3.923 -8.847 -3.759 1.807 -1.441 C17 RTL 18
RTL C18 C18 C 0 1 N N N -1.516 5.371 -4.416 -2.572 -2.200 0.917 C18 RTL 19
RTL C19 C19 C 0 1 N N N -0.216 0.485 -4.685 0.445 1.455 1.252 C19 RTL 20
RTL C20 C20 C 0 1 N N N -4.209 -3.037 -3.331 5.262 1.255 0.837 C20 RTL 21
RTL H21 H21 H 0 1 N N N 1.839 6.265 -8.041 -6.395 0.832 -1.306 H21 RTL 22
RTL H22 H22 H 0 1 N N N 0.556 6.077 -9.283 -5.228 -0.329 -1.991 H22 RTL 23
RTL H31 H31 H 0 1 N N N 0.509 7.946 -7.503 -6.293 -0.483 0.867 H31 RTL 24
RTL H32 H32 H 0 1 N N N -0.966 7.126 -8.117 -6.989 -1.393 -0.500 H32 RTL 25
RTL H41 H41 H 0 1 N N N -0.094 7.698 -5.403 -5.257 -2.671 0.864 H41 RTL 26
RTL H42 H42 H 0 1 N N N -1.725 7.397 -6.093 -4.913 -2.567 -0.876 H42 RTL 27
RTL H7 H7 H 0 1 N N N 0.613 2.564 -5.645 -1.984 1.267 1.158 H7 RTL 28
RTL H8 H8 H 0 1 N N N -2.382 3.110 -5.640 -1.110 -0.928 -0.805 H8 RTL 29
RTL H10 H10 H 0 1 N N N -3.541 1.412 -4.572 1.276 -1.037 -1.019 H10 RTL 30
RTL H11 H11 H 0 1 N N N -2.340 -1.422 -3.890 2.787 1.028 0.756 H11 RTL 31
RTL H12 H12 H 0 1 N N N -4.985 0.052 -4.237 3.659 -1.144 -1.232 H12 RTL 32
RTL H14 H14 H 0 1 N N N -7.136 -1.235 -3.077 6.074 -1.226 -1.424 H14 RTL 33
RTL H151 H151 H 0 0 N N N -7.718 -3.794 -3.228 7.965 0.669 -1.153 H151 RTL 34
RTL H152 H152 H 0 0 N N N -6.038 -4.091 -2.665 7.498 0.674 0.565 H152 RTL 35
RTL HO1 HO1 H 0 1 N N N -7.570 -4.191 -1.013 9.322 -0.809 0.142 HO1 RTL 36
RTL H161 H161 H 0 0 N N N 1.930 2.986 -7.347 -5.477 1.121 1.465 H161 RTL 37
RTL H162 H162 H 0 0 N N N 2.369 4.079 -8.704 -4.173 2.305 1.206 H162 RTL 38
RTL H163 H163 H 0 0 N N N 2.560 4.633 -7.006 -5.713 2.472 0.330 H163 RTL 39
RTL H171 H171 H 0 0 N N N -0.513 2.885 -8.573 -4.507 2.452 -1.903 H171 RTL 40
RTL H172 H172 H 0 0 N N N -1.206 4.479 -9.024 -3.005 2.420 -0.948 H172 RTL 41
RTL H173 H173 H 0 0 N N N 0.336 3.929 -9.762 -3.285 1.193 -2.207 H173 RTL 42
RTL H181 H181 H 0 0 N N N -1.455 4.320 -4.098 -2.954 -3.201 1.115 H181 RTL 43
RTL H182 H182 H 0 0 N N N -1.197 6.023 -3.590 -1.752 -2.259 0.201 H182 RTL 44
RTL H183 H183 H 0 0 N N N -2.553 5.611 -4.693 -2.212 -1.758 1.847 H183 RTL 45
RTL H191 H191 H 0 0 N N N -0.420 -0.541 -4.345 0.520 1.040 2.257 H191 RTL 46
RTL H192 H192 H 0 0 N N N 0.435 0.455 -5.571 1.348 2.020 1.024 H192 RTL 47
RTL H193 H193 H 0 0 N N N 0.284 1.045 -3.881 -0.421 2.115 1.195 H193 RTL 48
RTL H201 H201 H 0 0 N N N -4.709 -3.981 -3.068 5.337 0.840 1.843 H201 RTL 49
RTL H202 H202 H 0 0 N N N -3.521 -3.209 -4.172 6.166 1.821 0.609 H202 RTL 50
RTL H203 H203 H 0 0 N N N -3.643 -2.668 -2.463 4.396 1.915 0.781 H203 RTL 51
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RTL C1 C2 SING N N 1
RTL C1 C6 SING N N 2
RTL C1 C16 SING N N 3
RTL C1 C17 SING N N 4
RTL C2 C3 SING N N 5
RTL C2 H21 SING N N 6
RTL C2 H22 SING N N 7
RTL C3 C4 SING N N 8
RTL C3 H31 SING N N 9
RTL C3 H32 SING N N 10
RTL C4 C5 SING N N 11
RTL C4 H41 SING N N 12
RTL C4 H42 SING N N 13
RTL C5 C6 DOUB N N 14
RTL C5 C18 SING N N 15
RTL C6 C7 SING N N 16
RTL C7 C8 DOUB N E 17
RTL C7 H7 SING N N 18
RTL C8 C9 SING N N 19
RTL C8 H8 SING N N 20
RTL C9 C10 DOUB N E 21
RTL C9 C19 SING N N 22
RTL C10 C11 SING N N 23
RTL C10 H10 SING N N 24
RTL C11 C12 DOUB N E 25
RTL C11 H11 SING N N 26
RTL C12 C13 SING N N 27
RTL C12 H12 SING N N 28
RTL C13 C14 DOUB N E 29
RTL C13 C20 SING N N 30
RTL C14 C15 SING N N 31
RTL C14 H14 SING N N 32
RTL C15 O1 SING N N 33
RTL C15 H151 SING N N 34
RTL C15 H152 SING N N 35
RTL O1 HO1 SING N N 36
RTL C16 H161 SING N N 37
RTL C16 H162 SING N N 38
RTL C16 H163 SING N N 39
RTL C17 H171 SING N N 40
RTL C17 H172 SING N N 41
RTL C17 H173 SING N N 42
RTL C18 H181 SING N N 43
RTL C18 H182 SING N N 44
RTL C18 H183 SING N N 45
RTL C19 H191 SING N N 46
RTL C19 H192 SING N N 47
RTL C19 H193 SING N N 48
RTL C20 H201 SING N N 49
RTL C20 H202 SING N N 50
RTL C20 H203 SING N N 51
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RTL SMILES ACDLabs 12.01 "C1(CCCC(=C1\C=C\C(=C\C=C\C(=C\CO)C)C)C)(C)C"
RTL InChI InChI 1.03 "InChI=1S/C20H30O/c1-16(8-6-9-17(2)13-15-21)11-12-19-18(3)10-7-14-20(19,4)5/h6,8-9,11-13,21H,7,10,14-15H2,1-5H3/b9-6+,12-11+,16-8+,17-13+"
RTL InChIKey InChI 1.03 FPIPGXGPPPQFEQ-OVSJKPMPSA-N
RTL SMILES_CANONICAL CACTVS 3.385 "CC(=C\CO)/C=C/C=C(C)/C=C/C1=C(C)CCCC1(C)C"
RTL SMILES CACTVS 3.385 "CC(=CCO)C=CC=C(C)C=CC1=C(C)CCCC1(C)C"
RTL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/CO)/C)/C"
RTL SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(C(CCC1)(C)C)C=CC(=CC=CC(=CCO)C)C"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RTL "SYSTEMATIC NAME" ACDLabs 12.01 retinol
RTL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{E},4~{E},6~{E},8~{E})-3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,4,6,8-tetraen-1-ol"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RTL "Create component" 1999-07-08 RCSB
RTL "Modify descriptor" 2011-06-04 RCSB
RTL "Modify coordinates" 2020-06-03 RCSB
RTL "Other modification" 2020-09-03 RCSB
##