data_RTP
#
_chem_comp.id RTP
_chem_comp.name "RIBAVIRIN TRIPHOSPHATE"
_chem_comp.type "RNA LINKING"
_chem_comp.pdbx_type ATOMN
_chem_comp.formula "C8 H15 N4 O14 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-09-09
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 484.144
_chem_comp.one_letter_code N
_chem_comp.three_letter_code RTP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1MN9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RTP PG PG P 0 1 N N N 70.020 29.191 2.189 6.341 1.148 0.141 PG RTP 1
RTP O1G O1G O 0 1 N N N 70.409 30.443 2.901 5.797 1.641 -1.144 O1G RTP 2
RTP O2G O2G O 0 1 N N N 70.177 27.903 2.924 7.228 2.304 0.827 O2G RTP 3
RTP O3G O3G O 0 1 N N N 70.685 29.321 0.861 7.260 -0.146 -0.126 O3G RTP 4
RTP O3B O3B O 0 1 N N N 68.437 29.314 1.886 5.126 0.751 1.121 O3B RTP 5
RTP PB PB P 0 1 N N R 67.311 29.181 0.737 4.074 -0.090 0.239 PB RTP 6
RTP O1B O1B O 0 1 N N N 67.584 27.980 -0.098 3.958 0.520 -1.104 O1B RTP 7
RTP O2B O2B O 0 1 N N N 65.983 29.325 1.375 4.585 -1.610 0.097 O2B RTP 8
RTP O3A O3A O 0 1 N N N 67.487 30.449 -0.215 2.635 -0.073 0.962 O3A RTP 9
RTP PA PA P 0 1 N N R 68.207 30.674 -1.621 1.560 -0.567 -0.130 PA RTP 10
RTP O1A O1A O 0 1 N N N 67.190 30.730 -2.704 2.088 -1.754 -0.840 O1A RTP 11
RTP O2A O2A O 0 1 N N N 69.352 29.735 -1.730 1.289 0.615 -1.189 O2A RTP 12
RTP "O5'" O5* O 0 1 N N N 68.785 32.135 -1.384 0.182 -0.952 0.608 "O5'" RTP 13
RTP "C5'" C5* C 0 1 N N N 69.785 32.353 -0.404 -0.685 -1.491 -0.391 "C5'" RTP 14
RTP "C4'" C4* C 0 1 N N R 69.334 33.411 0.564 -2.020 -1.879 0.249 "C4'" RTP 15
RTP "O4'" O4* O 0 1 N N N 69.362 34.711 -0.084 -2.718 -0.702 0.709 "O4'" RTP 16
RTP "C1'" C1* C 0 1 N N R 68.201 35.460 0.267 -4.102 -1.100 0.823 "C1'" RTP 17
RTP N1 N1 N 0 1 Y N N 67.387 35.609 -0.934 -4.975 0.077 0.801 N1 RTP 18
RTP N2 N2 N 0 1 Y N N 66.752 36.747 -1.340 -5.093 0.908 -0.176 N2 RTP 19
RTP N3 N3 N 0 1 N N N 65.275 38.586 -2.723 -7.288 3.861 -0.204 N3 RTP 20
RTP C6 C6 C 0 1 N N N 65.313 37.310 -3.290 -6.381 2.981 -0.673 C6 RTP 21
RTP O3 O3 O 0 1 N N N 64.696 37.078 -4.335 -5.909 3.129 -1.783 O3 RTP 22
RTP C3 C3 C 0 1 Y N N 66.101 36.421 -2.524 -5.961 1.836 0.163 C3 RTP 23
RTP N4 N4 N 0 1 Y N N 66.346 35.087 -2.837 -6.403 1.556 1.402 N4 RTP 24
RTP C5 C5 C 0 1 Y N N 67.106 34.651 -1.873 -5.792 0.468 1.796 C5 RTP 25
RTP "C2'" C2* C 0 1 N N R 67.472 34.699 1.377 -4.363 -1.986 -0.415 "C2'" RTP 26
RTP "O2'" O2* O 0 1 N N N 67.955 35.138 2.635 -5.230 -3.074 -0.087 "O2'" RTP 27
RTP "C3'" C3* C 0 1 N N S 67.903 33.287 1.044 -2.960 -2.509 -0.803 "C3'" RTP 28
RTP "O3'" O3* O 0 1 N N N 67.799 32.412 2.159 -2.917 -3.935 -0.723 "O3'" RTP 29
RTP HOG2 2HOG H 0 0 N N N 69.929 27.106 2.471 7.942 2.512 0.210 HOG2 RTP 30
RTP HOG3 3HOG H 0 0 N N N 70.437 28.524 0.408 7.594 -0.435 0.735 HOG3 RTP 31
RTP HOB2 2HOB H 0 0 N N N 65.320 29.247 0.699 4.647 -1.969 0.993 HOB2 RTP 32
RTP HOA2 2HOA H 0 0 N N N 69.781 29.869 -2.567 0.947 1.367 -0.687 HOA2 RTP 33
RTP "H5'1" 1H5* H 0 0 N N N 70.772 32.598 -0.861 -0.225 -2.374 -0.834 "H5'1" RTP 34
RTP "H5'2" 2H5* H 0 0 N N N 70.076 31.409 0.114 -0.857 -0.743 -1.165 "H5'2" RTP 35
RTP "H4'" H4* H 0 1 N N N 70.031 33.289 1.426 -1.857 -2.571 1.075 "H4'" RTP 36
RTP "H1'" H1* H 0 1 N N N 68.445 36.479 0.648 -4.259 -1.671 1.738 "H1'" RTP 37
RTP HN31 1HN3 H 0 0 N N N 65.784 38.778 -1.860 -7.564 4.612 -0.752 HN31 RTP 38
RTP HN32 2HN3 H 0 0 N N N 64.706 39.228 -3.276 -7.668 3.740 0.680 HN32 RTP 39
RTP H5 H5 H 0 1 N N N 67.464 33.608 -1.854 -5.921 -0.027 2.747 H5 RTP 40
RTP "H2'" H2* H 0 1 N N N 66.366 34.826 1.435 -4.787 -1.393 -1.225 "H2'" RTP 41
RTP "HO2'" *HO2 H 0 0 N N N 67.503 34.666 3.324 -6.086 -2.689 0.146 "HO2'" RTP 42
RTP "H3'" H3* H 0 1 N N N 67.241 32.837 0.268 -2.690 -2.175 -1.805 "H3'" RTP 43
RTP "HO3'" *HO3 H 0 0 N N N 66.901 32.334 2.460 -3.520 -4.272 -1.400 "HO3'" RTP 44
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RTP PG O1G DOUB N N 1
RTP PG O2G SING N N 2
RTP PG O3G SING N N 3
RTP PG O3B SING N N 4
RTP O2G HOG2 SING N N 5
RTP O3G HOG3 SING N N 6
RTP O3B PB SING N N 7
RTP PB O1B DOUB N N 8
RTP PB O2B SING N N 9
RTP PB O3A SING N N 10
RTP O2B HOB2 SING N N 11
RTP O3A PA SING N N 12
RTP PA O1A DOUB N N 13
RTP PA O2A SING N N 14
RTP PA "O5'" SING N N 15
RTP O2A HOA2 SING N N 16
RTP "O5'" "C5'" SING N N 17
RTP "C5'" "C4'" SING N N 18
RTP "C5'" "H5'1" SING N N 19
RTP "C5'" "H5'2" SING N N 20
RTP "C4'" "O4'" SING N N 21
RTP "C4'" "C3'" SING N N 22
RTP "C4'" "H4'" SING N N 23
RTP "O4'" "C1'" SING N N 24
RTP "C1'" N1 SING N N 25
RTP "C1'" "C2'" SING N N 26
RTP "C1'" "H1'" SING N N 27
RTP N1 N2 SING Y N 28
RTP N1 C5 SING Y N 29
RTP N2 C3 DOUB Y N 30
RTP N3 C6 SING N N 31
RTP N3 HN31 SING N N 32
RTP N3 HN32 SING N N 33
RTP C6 O3 DOUB N N 34
RTP C6 C3 SING N N 35
RTP C3 N4 SING Y N 36
RTP N4 C5 DOUB Y N 37
RTP C5 H5 SING N N 38
RTP "C2'" "O2'" SING N N 39
RTP "C2'" "C3'" SING N N 40
RTP "C2'" "H2'" SING N N 41
RTP "O2'" "HO2'" SING N N 42
RTP "C3'" "O3'" SING N N 43
RTP "C3'" "H3'" SING N N 44
RTP "O3'" "HO3'" SING N N 45
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RTP SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(n1nc(nc1)C(=O)N)C(O)C2O"
RTP SMILES_CANONICAL CACTVS 3.341 "NC(=O)c1ncn(n1)[C@@H]2O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]2O"
RTP SMILES CACTVS 3.341 "NC(=O)c1ncn(n1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O"
RTP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(nn1[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)C(=O)N"
RTP SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(nn1C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)C(=O)N"
RTP InChI InChI 1.03 "InChI=1S/C8H15N4O14P3/c9-6(15)7-10-2-12(11-7)8-5(14)4(13)3(24-8)1-23-28(19,20)26-29(21,22)25-27(16,17)18/h2-5,8,13-14H,1H2,(H2,9,15)(H,19,20)(H,21,22)(H2,16,17,18)/t3-,4-,5-,8-/m1/s1"
RTP InChIKey InChI 1.03 MMJOCKKLRMRSEQ-AFCXAGJDSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RTP "SYSTEMATIC NAME" ACDLabs 10.04 "1-{5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}-1H-1,2,4-triazole-3-carboxamide"
RTP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(3-aminocarbonyl-1,2,4-triazol-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RTP "Create component" 2002-09-09 RCSB
RTP "Modify descriptor" 2011-06-04 RCSB
#