data_RTY
#
_chem_comp.id RTY
_chem_comp.name "4-{4-[(2S,3R)-2-amino-4-bromo-3-hydroxybutyl]phenoxy}butanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H20 Br N O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-07-01
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 346.217
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RTY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1CPI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RTY C C C 0 1 N N R Y N Y 5.173 -0.735 15.582 -3.859 -0.085 -0.363 C RTY 1
RTY N N N 0 1 N N N Y Y N 4.898 0.645 13.559 -2.297 -0.959 1.309 N RTY 2
RTY O O O 0 1 N N N Y N Y 5.266 0.425 16.428 -4.409 -1.391 -0.549 O RTY 3
RTY C1 C1 C 0 1 N N N N N N 7.128 4.345 9.883 4.655 0.123 -0.206 C1 RTY 4
RTY O1 O1 O 0 1 N N N N N N 4.114 4.270 11.300 8.689 -0.034 0.837 O1 RTY 5
RTY C2 C2 C 0 1 N N N N N N 4.249 3.344 10.491 8.377 0.932 0.182 C2 RTY 6
RTY C3 C3 C 0 1 N N N N N N 4.829 3.571 9.112 6.949 1.112 -0.262 C3 RTY 7
RTY C4 C4 C 0 1 N N N N N N 5.869 4.658 9.057 6.106 -0.060 0.245 C4 RTY 8
RTY C6 C6 C 0 1 N N N Y N N 3.727 -1.168 15.494 -4.640 0.646 0.730 C6 RTY 9
RTY CA CA C 0 1 N N S Y N N 5.695 -0.438 14.171 -2.391 -0.204 0.051 CA RTY 10
RTY CB CB C 0 1 N N N N N N 7.140 0.047 14.283 -1.610 -0.936 -1.042 CB RTY 11
RTY CG CG C 0 1 Y N N N N N 7.524 0.813 13.056 -0.145 -0.946 -0.692 CG RTY 12
RTY OH OH O 0 1 N N N N N N 7.736 3.077 9.583 3.868 -0.972 0.267 OH RTY 13
RTY CZ CZ C 0 1 Y N N N N N 7.753 2.299 10.730 2.546 -0.963 -0.049 CZ RTY 14
RTY CD1 CD1 C 0 1 Y N N N N N 7.643 0.183 11.822 0.672 0.087 -1.113 CD1 RTY 15
RTY CD2 CD2 C 0 1 Y N N N N N 7.555 2.193 13.097 0.380 -1.984 0.056 CD2 RTY 16
RTY CE1 CE1 C 0 1 Y N N N N N 7.751 0.918 10.655 2.016 0.080 -0.794 CE1 RTY 17
RTY CE2 CE2 C 0 1 Y N N N N N 7.669 2.932 11.965 1.723 -1.995 0.379 CE2 RTY 18
RTY H5 H H 0 1 N N N Y N Y 5.790 -1.534 16.019 -3.929 0.474 -1.296 H RTY 19
RTY H HN H 0 1 N N N Y Y N 5.243 0.834 12.640 -2.751 -0.463 2.062 HN RTY 20
RTY H2 HNA H 0 1 N Y N Y Y N 3.940 0.364 13.504 -2.680 -1.886 1.203 HNA RTY 21
RTY HO HO H 0 1 N N N Y N Y 6.173 0.702 16.487 -4.380 -1.946 0.243 HO RTY 22
RTY H1 H1 H 0 1 N N N N N N 7.870 5.131 9.679 4.263 1.055 0.200 H1 RTY 23
RTY H1A H1A H 0 1 N N N N N N 6.842 4.339 10.945 4.614 0.155 -1.295 H1A RTY 24
RTY O2 O2 O 0 1 N Y N N N N 3.846 2.025 10.869 9.303 1.846 -0.150 O2 RTY 25
RTY H3 H3 H 0 1 N N N N N N 5.300 2.633 8.783 6.556 2.044 0.144 H3 RTY 26
RTY H3A H3A H 0 1 N N N N N N 4.006 3.854 8.439 6.908 1.145 -1.351 H3A RTY 27
RTY H4 H4 H 0 1 N N N N N N 5.421 5.581 9.452 6.146 -0.093 1.333 H4 RTY 28
RTY H4A H4A H 0 1 N N N N N N 6.172 4.790 8.008 6.498 -0.992 -0.162 H4A RTY 29
RTY BR1 BR1 BR 0 0 N Y N Y N N 3.632 -3.066 15.489 -6.489 0.941 0.130 BR1 RTY 30
RTY H6 H6 H 0 1 N N N Y N N 3.174 -0.776 16.360 -4.645 0.044 1.638 H6 RTY 31
RTY H6A H6A H 0 1 N N N Y N N 3.283 -0.776 14.567 -4.167 1.607 0.934 H6A RTY 32
RTY HA HA H 0 1 N N N Y N N 5.625 -1.347 13.556 -1.972 0.792 0.193 HA RTY 33
RTY HB HB H 0 1 N N N N N N 7.236 0.700 15.163 -1.972 -1.962 -1.122 HB RTY 34
RTY HBA HBA H 0 1 N N N N N N 7.806 -0.821 14.391 -1.753 -0.425 -1.994 HBA RTY 35
RTY HD1 HD1 H 0 1 N N N N N N 7.651 -0.896 11.774 0.260 0.899 -1.694 HD1 RTY 36
RTY HD2 HD2 H 0 1 N N N N N N 7.487 2.695 14.051 -0.262 -2.787 0.388 HD2 RTY 37
RTY HE1 HE1 H 0 1 N N N N N N 7.833 0.421 9.700 2.655 0.885 -1.128 HE1 RTY 38
RTY HE2 HE2 H 0 1 N N N N N N 7.694 4.010 12.023 2.133 -2.809 0.958 HE2 RTY 39
RTY H20 H20 H 0 1 N Y N N N N 3.504 2.040 11.755 10.206 1.687 0.158 H20 RTY 40
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RTY C O SING N N 1
RTY C H5 SING N N 2
RTY N CA SING N N 3
RTY N H SING N N 4
RTY N H2 SING N N 5
RTY O HO SING N N 6
RTY C1 H1 SING N N 7
RTY C1 H1A SING N N 8
RTY C2 O1 DOUB N N 9
RTY C2 O2 SING N N 10
RTY C3 C2 SING N N 11
RTY C3 H3 SING N N 12
RTY C3 H3A SING N N 13
RTY C4 C1 SING N N 14
RTY C4 C3 SING N N 15
RTY C4 H4 SING N N 16
RTY C4 H4A SING N N 17
RTY C6 C SING N N 18
RTY C6 BR1 SING N N 19
RTY C6 H6 SING N N 20
RTY C6 H6A SING N N 21
RTY CA C SING N N 22
RTY CA CB SING N N 23
RTY CA HA SING N N 24
RTY CB HB SING N N 25
RTY CB HBA SING N N 26
RTY CG CB SING N N 27
RTY CG CD2 SING Y N 28
RTY OH C1 SING N N 29
RTY OH CZ SING N N 30
RTY CZ CE2 SING Y N 31
RTY CD1 CG DOUB Y N 32
RTY CD1 HD1 SING N N 33
RTY CD2 HD2 SING N N 34
RTY CE1 CZ DOUB Y N 35
RTY CE1 CD1 SING Y N 36
RTY CE1 HE1 SING N N 37
RTY CE2 CD2 DOUB Y N 38
RTY CE2 HE2 SING N N 39
RTY O2 H20 SING N N 40
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RTY SMILES ACDLabs 12.01 "BrCC(O)C(N)Cc1ccc(OCCCC(=O)O)cc1"
RTY SMILES_CANONICAL CACTVS 3.370 "N[C@@H](Cc1ccc(OCCCC(O)=O)cc1)[C@@H](O)CBr"
RTY SMILES CACTVS 3.370 "N[CH](Cc1ccc(OCCCC(O)=O)cc1)[CH](O)CBr"
RTY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1cc(ccc1C[C@@H]([C@H](CBr)O)N)OCCCC(=O)O"
RTY SMILES "OpenEye OEToolkits" 1.7.0 "c1cc(ccc1CC(C(CBr)O)N)OCCCC(=O)O"
RTY InChI InChI 1.03 "InChI=1S/C14H20BrNO4/c15-9-13(17)12(16)8-10-3-5-11(6-4-10)20-7-1-2-14(18)19/h3-6,12-13,17H,1-2,7-9,16H2,(H,18,19)/t12-,13-/m0/s1"
RTY InChIKey InChI 1.03 PYFHTJYYTRWEBY-STQMWFEESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RTY "SYSTEMATIC NAME" ACDLabs 12.01 "4-{4-[(2S,3R)-2-amino-4-bromo-3-hydroxybutyl]phenoxy}butanoic acid"
RTY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "4-[4-[(2S,3R)-2-azanyl-4-bromo-3-hydroxy-butyl]phenoxy]butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RTY "Create component" 2009-07-01 RCSB
RTY "Modify descriptor" 2011-06-04 RCSB
RTY "Modify backbone" 2023-11-03 PDBE
RTY "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id RTY
_pdbx_chem_comp_pcm.modified_residue_id ?
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Non-standard residue"
_pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#