data_RU8 # _chem_comp.id RU8 _chem_comp.name "bis(2,2'-bipyridine-kappa~2~N~1~,N~1'~)[2-iodo-N-(1,10-phenanthrolin-5-yl-kappa~2~N~1~,N~10~)acetamide]ruthenium(2+)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H26 I N7 O Ru" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2010-07-20 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 776.591 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RU8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RU8 C01 C01 C 0 1 Y N N N N N -67.953 21.263 -15.502 ? ? ? C01 RU8 1 RU8 C02 C02 C 0 1 Y N N N N N -66.721 21.230 -14.833 ? ? ? C02 RU8 2 RU8 C03 C03 C 0 1 Y N N N N N -65.531 21.764 -15.396 ? ? ? C03 RU8 3 RU8 C05 C05 C 0 1 Y N N N N N -64.271 21.735 -14.736 ? ? ? C05 RU8 4 RU8 C06 C06 C 0 1 Y N N N N N -69.069 20.722 -14.840 ? ? ? C06 RU8 5 RU8 C08 C08 C 0 1 Y N N N N N -68.946 20.154 -13.552 ? ? ? C08 RU8 6 RU8 N10 N10 N 0 1 Y N N N N N -67.798 20.146 -12.974 ? ? ? N10 RU8 7 RU8 C11 C11 C 0 1 Y N N N N N -66.715 20.641 -13.551 ? ? ? C11 RU8 8 RU8 RU1 RU1 RU 2 0 N N N N N N -67.275 19.388 -11.106 ? ? ? RU1 RU8 9 RU8 N13 N13 N 0 1 Y N N N N N -65.353 20.043 -11.635 ? ? ? N13 RU8 10 RU8 C14 C14 C 0 1 Y N N N N N -65.384 20.606 -12.821 ? ? ? C14 RU8 11 RU8 C15 C15 C 0 1 Y N N N N N -64.272 19.986 -10.923 ? ? ? C15 RU8 12 RU8 C17 C17 C 0 1 Y N N N N N -63.145 20.455 -11.383 ? ? ? C17 RU8 13 RU8 C19 C19 C 0 1 Y N N N N N -63.058 21.056 -12.653 ? ? ? C19 RU8 14 RU8 C21 C21 C 0 1 Y N N N N N -64.222 21.148 -13.429 ? ? ? C21 RU8 15 RU8 N22 N22 N 0 1 Y N N N N N -66.700 18.634 -9.283 ? ? ? N22 RU8 16 RU8 C23 C23 C 0 1 Y N N N N N -66.706 19.300 -8.169 ? ? ? C23 RU8 17 RU8 C24 C24 C 0 1 Y N N N N N -66.250 18.689 -6.994 ? ? ? C24 RU8 18 RU8 C25 C25 C 0 1 Y N N N N N -65.751 17.377 -7.080 ? ? ? C25 RU8 19 RU8 C26 C26 C 0 1 Y N N N N N -65.738 16.733 -8.327 ? ? ? C26 RU8 20 RU8 C27 C27 C 0 1 Y N N N N N -66.217 17.430 -9.447 ? ? ? C27 RU8 21 RU8 C28 C28 C 0 1 Y N N N N N -66.228 16.846 -10.761 ? ? ? C28 RU8 22 RU8 C29 C29 C 0 1 Y N N N N N -65.756 15.549 -10.970 ? ? ? C29 RU8 23 RU8 C30 C30 C 0 1 Y N N N N N -65.800 15.041 -12.262 ? ? ? C30 RU8 24 RU8 C31 C31 C 0 1 Y N N N N N -66.312 15.844 -13.279 ? ? ? C31 RU8 25 RU8 C32 C32 C 0 1 Y N N N N N -66.756 17.128 -12.968 ? ? ? C32 RU8 26 RU8 N33 N33 N 0 1 Y N N N N N -66.656 17.551 -11.773 ? ? ? N33 RU8 27 RU8 N34 N34 N 0 1 Y N N N N N -69.186 18.792 -10.603 ? ? ? N34 RU8 28 RU8 C35 C35 C 0 1 Y N N N N N -69.692 17.620 -10.797 ? ? ? C35 RU8 29 RU8 C36 C36 C 0 1 Y N N N N N -71.007 17.382 -10.407 ? ? ? C36 RU8 30 RU8 C37 C37 C 0 1 Y N N N N N -71.747 18.417 -9.840 ? ? ? C37 RU8 31 RU8 C38 C38 C 0 1 Y N N N N N -71.152 19.671 -9.681 ? ? ? C38 RU8 32 RU8 C39 C39 C 0 1 Y N N N N N -69.830 19.827 -10.102 ? ? ? C39 RU8 33 RU8 C40 C40 C 0 1 Y N N N N N -69.167 21.087 -9.977 ? ? ? C40 RU8 34 RU8 N41 N41 N 0 1 Y N N N N N -67.930 21.211 -10.392 ? ? ? N41 RU8 35 RU8 C42 C42 C 0 1 Y N N N N N -69.831 22.198 -9.429 ? ? ? C42 RU8 36 RU8 C43 C43 C 0 1 Y N N N N N -69.155 23.422 -9.323 ? ? ? C43 RU8 37 RU8 C44 C44 C 0 1 Y N N N N N -67.829 23.475 -9.767 ? ? ? C44 RU8 38 RU8 C45 C45 C 0 1 Y N N N N N -67.249 22.308 -10.298 ? ? ? C45 RU8 39 RU8 N46 N46 N 0 1 N N N N N N -63.239 22.265 -15.356 ? ? ? N46 RU8 40 RU8 C47 C47 C 0 1 N N N N N N -62.126 21.689 -15.749 ? ? ? C47 RU8 41 RU8 O48 O48 O 0 1 N N N N N N -61.868 20.401 -15.511 ? ? ? O48 RU8 42 RU8 C49 C49 C 0 1 N N N N N N -61.132 22.449 -16.413 ? ? ? C49 RU8 43 RU8 H01 H01 H 0 1 N N N N N N -68.041 21.689 -16.491 ? ? ? H01 RU8 44 RU8 H03 H03 H 0 1 N N N N N N -65.586 22.215 -16.376 ? ? ? H03 RU8 45 RU8 H06 H06 H 0 1 N N N N N N -70.035 20.741 -15.323 ? ? ? H06 RU8 46 RU8 H08 H08 H 0 1 N N N N N N -69.808 19.731 -13.058 ? ? ? H08 RU8 47 RU8 H15 H15 H 0 1 N N N N N N -64.304 19.545 -9.938 ? ? ? H15 RU8 48 RU8 H17 H17 H 0 1 N N N N N N -62.256 20.380 -10.774 ? ? ? H17 RU8 49 RU8 H19 H19 H 0 1 N N N N N N -62.117 21.437 -13.021 ? ? ? H19 RU8 50 RU8 H23 H23 H 0 1 N N N N N N -67.061 20.320 -8.148 ? ? ? H23 RU8 51 RU8 H24 H24 H 0 1 N N N N N N -66.281 19.211 -6.049 ? ? ? H24 RU8 52 RU8 H25 H25 H 0 1 N N N N N N -65.383 16.872 -6.199 ? ? ? H25 RU8 53 RU8 H26 H26 H 0 1 N N N N N N -65.367 15.723 -8.423 ? ? ? H26 RU8 54 RU8 H29 H29 H 0 1 N N N N N N -65.369 14.959 -10.153 ? ? ? H29 RU8 55 RU8 H30 H30 H 0 1 N N N N N N -65.444 14.043 -12.474 ? ? ? H30 RU8 56 RU8 H31 H31 H 0 1 N N N N N N -66.364 15.477 -14.293 ? ? ? H31 RU8 57 RU8 H32 H32 H 0 1 N N N N N N -67.181 17.758 -13.735 ? ? ? H32 RU8 58 RU8 H35 H35 H 0 1 N N N N N N -69.105 16.837 -11.254 ? ? ? H35 RU8 59 RU8 H36 H36 H 0 1 N N N N N N -71.449 16.406 -10.543 ? ? ? H36 RU8 60 RU8 H37 H37 H 0 1 N N N N N N -72.768 18.252 -9.527 ? ? ? H37 RU8 61 RU8 H38 H38 H 0 1 N N N N N N -71.698 20.495 -9.246 ? ? ? H38 RU8 62 RU8 H42 H42 H 0 1 N N N N N N -70.853 22.110 -9.092 ? ? ? H42 RU8 63 RU8 H43 H43 H 0 1 N N N N N N -69.641 24.295 -8.912 ? ? ? H43 RU8 64 RU8 H44 H44 H 0 1 N N N N N N -67.263 24.392 -9.703 ? ? ? H44 RU8 65 RU8 H45 H45 H 0 1 N N N N N N -66.222 22.328 -10.632 ? ? ? H45 RU8 66 RU8 HN46 HN46 H 0 0 N N N N N N -63.312 23.242 -15.556 ? ? ? HN46 RU8 67 RU8 I1 I1 I 0 1 N Y N N N N -59.477 21.226 -16.831 ? ? ? I1 RU8 68 RU8 H49 H49 H 0 1 N N N N N N -61.541 22.846 -17.354 ? ? ? H49 RU8 69 RU8 H49A H49A H 0 0 N N N N N N -60.818 23.284 -15.769 ? ? ? H49A RU8 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RU8 C01 C06 DOUB Y N 1 RU8 C01 C02 SING Y N 2 RU8 C01 H01 SING N N 3 RU8 C02 C11 DOUB Y N 4 RU8 C03 C02 SING Y N 5 RU8 C03 C05 DOUB Y N 6 RU8 C03 H03 SING N N 7 RU8 C05 C21 SING Y N 8 RU8 C06 C08 SING Y N 9 RU8 C06 H06 SING N N 10 RU8 C08 N10 DOUB Y N 11 RU8 C08 H08 SING N N 12 RU8 N10 RU1 SING N N 13 RU8 C11 N10 SING Y N 14 RU8 C11 C14 SING Y N 15 RU8 RU1 N34 SING N N 16 RU8 RU1 N41 SING N N 17 RU8 RU1 N22 SING N N 18 RU8 N13 RU1 SING N N 19 RU8 N13 C15 DOUB Y N 20 RU8 C14 N13 SING Y N 21 RU8 C15 H15 SING N N 22 RU8 C17 C15 SING Y N 23 RU8 C17 H17 SING N N 24 RU8 C19 C17 DOUB Y N 25 RU8 C19 H19 SING N N 26 RU8 C21 C14 DOUB Y N 27 RU8 C21 C19 SING Y N 28 RU8 N22 C23 SING Y N 29 RU8 C23 C24 DOUB Y N 30 RU8 C23 H23 SING N N 31 RU8 C24 H24 SING N N 32 RU8 C25 C24 SING Y N 33 RU8 C25 H25 SING N N 34 RU8 C26 C25 DOUB Y N 35 RU8 C26 H26 SING N N 36 RU8 C27 N22 DOUB Y N 37 RU8 C27 C26 SING Y N 38 RU8 C28 C27 SING Y N 39 RU8 C29 C28 SING Y N 40 RU8 C29 H29 SING N N 41 RU8 C30 C29 DOUB Y N 42 RU8 C30 H30 SING N N 43 RU8 C31 C30 SING Y N 44 RU8 C31 C32 DOUB Y N 45 RU8 C31 H31 SING N N 46 RU8 C32 N33 SING Y N 47 RU8 C32 H32 SING N N 48 RU8 N33 RU1 SING N N 49 RU8 N33 C28 DOUB Y N 50 RU8 N34 C39 SING Y N 51 RU8 C35 N34 DOUB Y N 52 RU8 C35 C36 SING Y N 53 RU8 C35 H35 SING N N 54 RU8 C36 C37 DOUB Y N 55 RU8 C36 H36 SING N N 56 RU8 C37 C38 SING Y N 57 RU8 C37 H37 SING N N 58 RU8 C38 H38 SING N N 59 RU8 C39 C38 DOUB Y N 60 RU8 C39 C40 SING Y N 61 RU8 C40 C42 SING Y N 62 RU8 N41 C40 DOUB Y N 63 RU8 N41 C45 SING Y N 64 RU8 C42 C43 DOUB Y N 65 RU8 C42 H42 SING N N 66 RU8 C43 H43 SING N N 67 RU8 C44 C43 SING Y N 68 RU8 C44 H44 SING N N 69 RU8 C45 C44 DOUB Y N 70 RU8 C45 H45 SING N N 71 RU8 N46 C05 SING N N 72 RU8 N46 HN46 SING N N 73 RU8 C47 N46 SING N N 74 RU8 C47 O48 DOUB N N 75 RU8 C49 C47 SING N N 76 RU8 C49 I1 SING N N 77 RU8 C49 H49 SING N N 78 RU8 C49 H49A SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RU8 SMILES ACDLabs 12.01 "ICC(=O)Nc1cc7c6c2c1cccn2[Ru+2]%105(n3ccccc3c4ccccn45)(n6ccc7)n8ccccc8c9ccccn9%10" RU8 SMILES_CANONICAL CACTVS 3.370 "[Ru++]|1|2|3(|n4ccccc4c5ccccn|15)(|n6ccccc6c7ccccn|27)|n8cccc9cc(NC(=O)CI)c%10cccn|3c%10c89" RU8 SMILES CACTVS 3.370 "[Ru++]|1|2|3(|n4ccccc4c5ccccn|15)(|n6ccccc6c7ccccn|27)|n8cccc9cc(NC(=O)CI)c%10cccn|3c%10c89" RU8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1c2c3c4c(c1NC(=O)CI)C=CC=[N]4[Ru+2]56([N]3=CC=C2)([N]7=C(C=CC=C7)C8=[N]5C=CC=C8)[N]9=C(C=CC=C9)C1=CC=CC=[N]61" RU8 SMILES "OpenEye OEToolkits" 1.7.0 "c1c2c3c4c(c1NC(=O)CI)C=CC=[N]4[Ru+2]56([N]3=CC=C2)([N]7=C(C=CC=C7)C8=[N]5C=CC=C8)[N]9=C(C=CC=C9)C1=CC=CC=[N]61" RU8 InChI InChI 1.03 "InChI=1S/C14H10IN3O.2C10H8N2.Ru/c15-8-12(19)18-11-7-9-3-1-5-16-13(9)14-10(11)4-2-6-17-14;2*1-3-7-11-9(5-1)10-6-2-4-8-12-10;/h1-7H,8H2,(H,18,19);2*1-8H;/q;;;+2" RU8 InChIKey InChI 1.03 IMVNBPJSKRZLRT-UHFFFAOYSA-N # _pdbx_chem_comp_identifier.comp_id RU8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "bis(2,2'-bipyridine-kappa~2~N~1~,N~1'~)[2-iodo-N-(1,10-phenanthrolin-5-yl-kappa~2~N~1~,N~10~)acetamide]ruthenium(2+)" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RU8 "Create component" 2010-07-20 RCSB RU8 "Modify aromatic_flag" 2011-06-04 RCSB RU8 "Modify descriptor" 2011-06-04 RCSB RU8 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id RU8 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C49 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #