data_RUB # _chem_comp.id RUB _chem_comp.name RIBULOSE-1,5-DIPHOSPHATE _chem_comp.type SACCHARIDE _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H12 O11 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 310.090 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RUB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1RXO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RUB C1 C1 C 0 1 N N N -4.438 75.268 30.130 -0.281 -0.292 -2.334 C1 RUB 1 RUB C2 C2 C 0 1 N N N -4.658 74.417 31.386 -1.300 0.120 -1.303 C2 RUB 2 RUB C3 C3 C 0 1 N N R -3.424 74.311 32.371 -1.249 -0.465 0.083 C3 RUB 3 RUB C4 C4 C 0 1 N N R -3.079 75.610 33.099 -0.369 0.412 0.975 C4 RUB 4 RUB C5 C5 C 0 1 N N N -1.932 75.441 34.114 -0.317 -0.182 2.384 C5 RUB 5 RUB O1 O1 O 0 1 N N N -5.418 75.236 29.057 -0.538 0.395 -3.560 O1 RUB 6 RUB O2 O2 O 0 1 N N N -5.729 73.806 31.581 -2.158 0.920 -1.590 O2 RUB 7 RUB O3 O3 O 0 1 N N N -3.689 73.354 33.333 -2.570 -0.522 0.625 O3 RUB 8 RUB O4 O4 O 0 1 N N N -2.710 76.584 32.180 0.951 0.469 0.433 O4 RUB 9 RUB O5 O5 O 0 1 N N N -1.755 76.439 35.134 0.504 0.637 3.217 O5 RUB 10 RUB P1 P1 P 0 1 N N N -5.232 76.163 27.760 0.582 -0.090 -4.609 P1 RUB 11 RUB P2 P2 P 0 1 N N N -0.285 76.805 35.756 0.514 -0.043 4.676 P2 RUB 12 RUB O1P O1P O 0 1 N N N -6.435 76.060 26.935 0.480 -1.555 -4.797 O1P RUB 13 RUB O2P O2P O 0 1 N N N -4.035 75.419 26.993 0.351 0.648 -6.021 O2P RUB 14 RUB O3P O3P O 0 1 N N N -4.755 77.476 28.183 2.043 0.277 -4.043 O3P RUB 15 RUB O4P O4P O 0 1 N N N -0.421 78.108 36.508 1.067 -1.413 4.577 O4P RUB 16 RUB O5P O5P O 0 1 N N N 0.598 77.050 34.462 1.427 0.833 5.671 O5P RUB 17 RUB O6P O6P O 0 1 N N N 0.255 75.598 36.441 -0.989 -0.112 5.247 O6P RUB 18 RUB H11 1H1 H 0 1 N N N -4.288 76.328 30.441 0.717 -0.039 -1.978 H11 RUB 19 RUB H12 2H1 H 0 1 N N N -3.438 75.019 29.704 -0.346 -1.367 -2.499 H12 RUB 20 RUB H3 H3 H 0 1 N N N -2.551 74.048 31.728 -0.831 -1.471 0.038 H3 RUB 21 RUB H4 H4 H 0 1 N N N -3.995 75.911 33.658 -0.786 1.418 1.021 H4 RUB 22 RUB H51 1H5 H 0 1 N N N -2.026 74.442 34.600 -1.324 -0.226 2.798 H51 RUB 23 RUB H52 2H5 H 0 1 N N N -0.973 75.321 33.557 0.100 -1.188 2.339 H52 RUB 24 RUB HO3 HO3 H 0 1 N N N -2.948 73.290 33.924 -2.902 0.385 0.648 HO3 RUB 25 RUB HO4 HO4 H 0 1 N N N -2.495 77.391 32.632 1.284 -0.438 0.410 HO4 RUB 26 RUB HOP2 2HOP H 0 0 N N N -3.924 75.967 26.225 1.041 0.329 -6.619 HOP2 RUB 27 RUB HOP3 3HOP H 0 0 N N N -4.644 78.024 27.415 2.067 1.238 -3.936 HOP3 RUB 28 RUB HOP5 5HOP H 0 0 N N N 1.450 77.262 34.822 1.406 0.391 6.532 HOP5 RUB 29 RUB HOP6 6HOP H 0 0 N N N 1.107 75.810 36.801 -1.311 0.798 5.295 HOP6 RUB 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RUB C1 C2 SING N N 1 RUB C1 O1 SING N N 2 RUB C1 H11 SING N N 3 RUB C1 H12 SING N N 4 RUB C2 C3 SING N N 5 RUB C2 O2 DOUB N N 6 RUB C3 C4 SING N N 7 RUB C3 O3 SING N N 8 RUB C3 H3 SING N N 9 RUB C4 C5 SING N N 10 RUB C4 O4 SING N N 11 RUB C4 H4 SING N N 12 RUB C5 O5 SING N N 13 RUB C5 H51 SING N N 14 RUB C5 H52 SING N N 15 RUB O1 P1 SING N N 16 RUB O3 HO3 SING N N 17 RUB O4 HO4 SING N N 18 RUB O5 P2 SING N N 19 RUB P1 O1P DOUB N N 20 RUB P1 O2P SING N N 21 RUB P1 O3P SING N N 22 RUB P2 O4P DOUB N N 23 RUB P2 O5P SING N N 24 RUB P2 O6P SING N N 25 RUB O2P HOP2 SING N N 26 RUB O3P HOP3 SING N N 27 RUB O5P HOP5 SING N N 28 RUB O6P HOP6 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RUB SMILES ACDLabs 10.04 "O=P(O)(O)OCC(O)C(O)C(=O)COP(=O)(O)O" RUB SMILES_CANONICAL CACTVS 3.341 "O[C@H](CO[P](O)(O)=O)[C@@H](O)C(=O)CO[P](O)(O)=O" RUB SMILES CACTVS 3.341 "O[CH](CO[P](O)(O)=O)[CH](O)C(=O)CO[P](O)(O)=O" RUB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@H]([C@H](C(=O)COP(=O)(O)O)O)O)OP(=O)(O)O" RUB SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(C(=O)COP(=O)(O)O)O)O)OP(=O)(O)O" RUB InChI InChI 1.03 "InChI=1S/C5H12O11P2/c6-3(1-15-17(9,10)11)5(8)4(7)2-16-18(12,13)14/h3,5-6,8H,1-2H2,(H2,9,10,11)(H2,12,13,14)/t3-,5-/m1/s1" RUB InChIKey InChI 1.03 YAHZABJORDUQGO-NQXXGFSBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RUB "SYSTEMATIC NAME" ACDLabs 10.04 1,5-di-O-phosphono-D-ribulose RUB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(3R,4R)-3,4-dihydroxy-2-oxo-5-phosphonooxy-pentyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RUB "Create component" 1999-07-08 EBI RUB "Modify descriptor" 2011-06-04 RCSB #