data_RUG # _chem_comp.id RUG _chem_comp.name "1-beta-D-glucopyranosyl-4-(hydroxymethyl)-1H-1,2,3-triazole" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C9 H15 N3 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;1-beta-D-glucosyl-4-(hydroxymethyl)-1H-1,2,3-triazole; 1-D-glucosyl-4-(hydroxymethyl)-1H-1,2,3-triazole; 1-glucosyl-4-(hydroxymethyl)-1H-1,2,3-triazole ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-02-05 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 261.232 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RUG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3G2I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 RUG "1-beta-D-glucosyl-4-(hydroxymethyl)-1H-1,2,3-triazole" PDB ? 2 RUG "1-D-glucosyl-4-(hydroxymethyl)-1H-1,2,3-triazole" PDB ? 3 RUG "1-glucosyl-4-(hydroxymethyl)-1H-1,2,3-triazole" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RUG O2 O2 O 0 1 N N N 33.725 24.413 25.916 -0.005 2.521 -0.428 O2 RUG 1 RUG C2 C2 C 0 1 N N R 33.529 23.025 26.203 0.707 1.411 0.123 C2 RUG 2 RUG C3 C3 C 0 1 N N S 32.405 22.427 25.334 2.156 1.435 -0.373 C3 RUG 3 RUG O3 O3 O 0 1 N N N 32.748 22.490 23.951 2.804 2.617 0.102 O3 RUG 4 RUG C4 C4 C 0 1 N N S 32.173 20.963 25.718 2.888 0.200 0.161 C4 RUG 5 RUG O4 O4 O 0 1 N N N 31.018 20.499 25.041 4.220 0.174 -0.355 O4 RUG 6 RUG C5 C5 C 0 1 N N R 31.977 20.811 27.238 2.141 -1.059 -0.288 C5 RUG 7 RUG C6 C6 C 0 1 N N N 31.823 19.354 27.670 2.832 -2.295 0.292 C6 RUG 8 RUG O6 O6 O 0 1 N N N 32.884 18.575 27.112 2.207 -3.474 -0.220 O6 RUG 9 RUG O5 O5 O 0 1 N N N 33.126 21.371 27.909 0.792 -1.003 0.181 O5 RUG 10 RUG C1 C1 C 0 1 N N R 33.203 22.810 27.697 0.045 0.105 -0.324 C1 RUG 11 RUG N1 N1 N 0 1 Y N N 34.247 23.315 28.608 -1.324 0.049 0.196 N1 RUG 12 RUG C7 C7 C 0 1 Y N N 35.570 23.216 28.475 -2.444 -0.142 -0.540 C7 RUG 13 RUG N2 N2 N 0 1 Y N N 33.972 23.885 29.671 -1.667 0.166 1.431 N2 RUG 14 RUG N3 N3 N 0 1 Y N N 35.010 24.202 30.269 -2.944 0.069 1.547 N3 RUG 15 RUG C8 C8 C 0 1 Y N N 36.062 23.800 29.555 -3.476 -0.124 0.335 C8 RUG 16 RUG C9 C9 C 0 1 N N N 37.538 23.979 29.905 -4.938 -0.294 0.008 C9 RUG 17 RUG O9 O9 O 0 1 N N N 37.689 24.103 31.321 -5.092 -0.481 -1.400 O9 RUG 18 RUG HO2 HO2 H 0 1 N Y N 33.768 24.902 26.729 0.361 3.382 -0.185 HO2 RUG 19 RUG H2 H2 H 0 1 N N N 34.470 22.506 25.965 0.693 1.473 1.211 H2 RUG 20 RUG H3 H3 H 0 1 N N N 31.490 23.013 25.507 2.169 1.424 -1.463 H3 RUG 21 RUG HO3 HO3 H 0 1 N Y N 31.955 22.504 23.428 2.389 3.439 -0.193 HO3 RUG 22 RUG H4 H4 H 0 1 N N N 33.055 20.372 25.430 2.918 0.237 1.250 H4 RUG 23 RUG HO4 HO4 H 0 1 N Y N 30.307 20.395 25.662 4.751 0.946 -0.113 HO4 RUG 24 RUG H5 H5 H 0 1 N N N 31.050 21.338 27.508 2.147 -1.117 -1.376 H5 RUG 25 RUG H61 H6 H 0 1 N N N 31.861 19.291 28.768 3.884 -2.290 0.008 H61 RUG 26 RUG H62 H6A H 0 1 N N N 30.858 18.966 27.313 2.748 -2.282 1.379 H62 RUG 27 RUG HO6 HO6 H 0 1 N Y N 32.703 18.402 26.196 2.594 -4.298 0.106 HO6 RUG 28 RUG H1 H1 H 0 1 N N N 32.272 23.354 27.916 0.023 0.063 -1.413 H1 RUG 29 RUG H7 H7 H 0 1 N N N 36.119 22.760 27.664 -2.502 -0.280 -1.609 H7 RUG 30 RUG H9 H9 H 0 1 N N N 38.105 23.104 29.553 -5.330 -1.163 0.536 H9 RUG 31 RUG H9A H9A H 0 1 N N N 37.919 24.889 29.418 -5.485 0.597 0.318 H9A RUG 32 RUG HO9 HO9 H 0 1 N N N 38.613 24.131 31.540 -6.010 -0.597 -1.683 HO9 RUG 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RUG O2 C2 SING N N 1 RUG O2 HO2 SING N N 2 RUG C3 C2 SING N N 3 RUG C2 C1 SING N N 4 RUG C2 H2 SING N N 5 RUG O3 C3 SING N N 6 RUG C3 C4 SING N N 7 RUG C3 H3 SING N N 8 RUG O3 HO3 SING N N 9 RUG O4 C4 SING N N 10 RUG C4 C5 SING N N 11 RUG C4 H4 SING N N 12 RUG O4 HO4 SING N N 13 RUG C5 C6 SING N N 14 RUG C5 O5 SING N N 15 RUG C5 H5 SING N N 16 RUG O6 C6 SING N N 17 RUG C6 H61 SING N N 18 RUG C6 H62 SING N N 19 RUG O6 HO6 SING N N 20 RUG C1 O5 SING N N 21 RUG C1 N1 SING N N 22 RUG C1 H1 SING N N 23 RUG C7 N1 SING Y N 24 RUG N1 N2 SING Y N 25 RUG C7 C8 DOUB Y N 26 RUG C7 H7 SING N N 27 RUG N2 N3 DOUB Y N 28 RUG C8 N3 SING Y N 29 RUG C8 C9 SING N N 30 RUG C9 O9 SING N N 31 RUG C9 H9 SING N N 32 RUG C9 H9A SING N N 33 RUG O9 HO9 SING N N 34 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RUG SMILES ACDLabs 10.04 "n1nn(cc1CO)C2OC(C(O)C(O)C2O)CO" RUG SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)n2cc(CO)nn2" RUG SMILES CACTVS 3.341 "OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)n2cc(CO)nn2" RUG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c(nnn1[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)CO" RUG SMILES "OpenEye OEToolkits" 1.5.0 "c1c(nnn1C2C(C(C(C(O2)CO)O)O)O)CO" RUG InChI InChI 1.03 "InChI=1S/C9H15N3O6/c13-2-4-1-12(11-10-4)9-8(17)7(16)6(15)5(3-14)18-9/h1,5-9,13-17H,2-3H2/t5-,6-,7+,8-,9-/m1/s1" RUG InChIKey InChI 1.03 BHGZOVXPACYZLI-SYHAXYEDSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RUG "SYSTEMATIC NAME" ACDLabs 10.04 "1-beta-D-glucopyranosyl-4-(hydroxymethyl)-1H-1,2,3-triazole" RUG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[4-(hydroxymethyl)-1,2,3-triazol-1-yl]oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support RUG "CARBOHYDRATE ISOMER" D PDB ? RUG "CARBOHYDRATE RING" pyranose PDB ? RUG "CARBOHYDRATE ANOMER" beta PDB ? RUG "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RUG "Create component" 2009-02-05 RCSB RUG "Modify descriptor" 2011-06-04 RCSB RUG "Other modification" 2020-07-03 RCSB RUG "Modify synonyms" 2020-07-17 RCSB RUG "Modify internal type" 2020-07-17 RCSB RUG "Modify linking type" 2020-07-17 RCSB RUG "Modify atom id" 2020-07-17 RCSB RUG "Modify component atom id" 2020-07-17 RCSB RUG "Modify leaving atom flag" 2020-07-17 RCSB ##