data_RUR # _chem_comp.id RUR _chem_comp.name "[3,3'-(7,12-diethyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)dipropanoato(2-)]ruthenium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H36 N4 O4 Ru" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "MESOPORPHYRIN IX CONTAINING RU" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-03-23 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag Y _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 665.744 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RUR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 3M0B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RUR CHA CHA C 0 1 N N N -0.986 -20.201 -5.680 ? ? ? CHA RUR 1 RUR CHB CHB C 0 1 N N N -2.889 -24.527 -6.451 ? ? ? CHB RUR 2 RUR CHC CHC C 0 1 N N N -0.546 -26.227 -2.585 ? ? ? CHC RUR 3 RUR CHD CHD C 0 1 N N N 0.816 -21.746 -1.390 ? ? ? CHD RUR 4 RUR C1A C1A C 0 1 Y N N -1.510 -21.264 -6.392 ? ? ? C1A RUR 5 RUR C2A C2A C 0 1 Y N N -1.756 -21.370 -7.807 ? ? ? C2A RUR 6 RUR C3A C3A C 0 1 Y N N -2.272 -22.581 -8.015 ? ? ? C3A RUR 7 RUR C4A C4A C 0 1 Y N N -2.405 -23.269 -6.752 ? ? ? C4A RUR 8 RUR CMA CMA C 0 1 N N N -2.677 -23.175 -9.348 ? ? ? CMA RUR 9 RUR CAA CAA C 0 1 N N N -1.402 -20.300 -8.853 ? ? ? CAA RUR 10 RUR CBA CBA C 0 1 N N N -2.259 -19.048 -8.834 ? ? ? CBA RUR 11 RUR CGA CGA C 0 1 N N N -3.476 -19.238 -9.668 ? ? ? CGA RUR 12 RUR O1A O1A O 0 1 N N N -3.480 -20.028 -10.564 ? ? ? O1A RUR 13 RUR O2A O2A O 0 1 N N N -4.468 -18.609 -9.446 ? ? ? O2A RUR 14 RUR C1B C1B C 0 1 N N N -2.445 -25.453 -5.521 ? ? ? C1B RUR 15 RUR C2B C2B C 0 1 N N N -2.648 -26.868 -5.429 ? ? ? C2B RUR 16 RUR C3B C3B C 0 1 N N N -1.993 -27.311 -4.355 ? ? ? C3B RUR 17 RUR C4B C4B C 0 1 N N N -1.336 -26.225 -3.718 ? ? ? C4B RUR 18 RUR CMB CMB C 0 1 N N N -3.510 -27.666 -6.392 ? ? ? CMB RUR 19 RUR CAB CAB C 0 1 N N N -1.903 -28.723 -3.816 ? ? ? CAB RUR 20 RUR CBB CBB C 0 1 N N N -1.811 -29.733 -4.643 ? ? ? CBB RUR 21 RUR C1C C1C C 0 1 Y N N 0.047 -25.241 -1.830 ? ? ? C1C RUR 22 RUR C2C C2C C 0 1 Y N N 0.782 -25.288 -0.602 ? ? ? C2C RUR 23 RUR C3C C3C C 0 1 Y N N 1.153 -24.046 -0.285 ? ? ? C3C RUR 24 RUR C4C C4C C 0 1 Y N N 0.684 -23.126 -1.273 ? ? ? C4C RUR 25 RUR CMC CMC C 0 1 N N N 1.069 -26.553 0.194 ? ? ? CMC RUR 26 RUR CAC CAC C 0 1 N N N 1.943 -23.598 0.928 ? ? ? CAC RUR 27 RUR CBC CBC C 0 1 N N N 3.241 -23.757 0.971 ? ? ? CBC RUR 28 RUR C1D C1D C 0 1 N N N 0.559 -20.837 -2.415 ? ? ? C1D RUR 29 RUR C2D C2D C 0 1 N N N 0.935 -19.454 -2.551 ? ? ? C2D RUR 30 RUR C3D C3D C 0 1 N N N 0.374 -18.954 -3.888 ? ? ? C3D RUR 31 RUR C4D C4D C 0 1 N N N -0.305 -20.086 -4.473 ? ? ? C4D RUR 32 RUR CMD CMD C 0 1 N N N 1.748 -18.664 -1.545 ? ? ? CMD RUR 33 RUR CAD CAD C 0 1 N N N 0.531 -17.564 -4.510 ? ? ? CAD RUR 34 RUR CBD CBD C 0 1 N N N -0.368 -16.520 -3.926 ? ? ? CBD RUR 35 RUR CGD CGD C 0 1 N N N 0.028 -15.190 -4.482 ? ? ? CGD RUR 36 RUR O1D O1D O 0 1 N N N 1.209 -14.952 -4.701 ? ? ? O1D RUR 37 RUR O2D O2D O 0 1 N N N -0.846 -14.377 -4.709 ? ? ? O2D RUR 38 RUR RU RU RU 0 0 N N N -0.804 -23.152 -4.027 ? ? ? RU RUR 39 RUR NA NA N 0 1 Y N N -1.953 -22.401 -5.848 ? ? ? NA RUR 40 RUR NB NB N 0 1 N N N -1.662 -25.192 -4.481 ? ? ? NB RUR 41 RUR NC NC N 0 1 Y N N 0.063 -23.942 -2.097 ? ? ? NC RUR 42 RUR ND ND N 0 1 N N N -0.144 -21.051 -3.543 ? ? ? ND RUR 43 RUR HHA HHA H 0 1 N N N -1.139 -19.250 -6.169 ? ? ? HHA RUR 44 RUR HHB HHB H 0 1 N N N -3.746 -24.837 -7.030 ? ? ? HHB RUR 45 RUR HHC HHC H 0 1 N N N -0.351 -27.220 -2.209 ? ? ? HHC RUR 46 RUR HHD HHD H 0 1 N N N 1.200 -21.279 -0.495 ? ? ? HHD RUR 47 RUR HMA HMA H 0 1 N N N -3.069 -24.191 -9.193 ? ? ? HMA RUR 48 RUR HMAA HMAA H 0 0 N N N -3.455 -22.548 -9.808 ? ? ? HMAA RUR 49 RUR HMAB HMAB H 0 0 N N N -1.801 -23.218 -10.012 ? ? ? HMAB RUR 50 RUR HAA HAA H 0 1 N N N -0.363 -19.990 -8.668 ? ? ? HAA RUR 51 RUR HAAA HAAA H 0 0 N N N -1.514 -20.760 -9.846 ? ? ? HAAA RUR 52 RUR HBA HBA H 0 1 N N N -2.561 -18.834 -7.798 ? ? ? HBA RUR 53 RUR HBAA HBAA H 0 0 N N N -1.676 -18.206 -9.234 ? ? ? HBAA RUR 54 RUR HMB HMB H 0 1 N N N -3.499 -28.727 -6.102 ? ? ? HMB RUR 55 RUR HMBA HMBA H 0 0 N N N -4.542 -27.288 -6.360 ? ? ? HMBA RUR 56 RUR HMBB HMBB H 0 0 N N N -3.113 -27.561 -7.412 ? ? ? HMBB RUR 57 RUR HAB HAB H 0 1 N N N -0.997 -28.755 -3.193 ? ? ? HAB RUR 58 RUR HBB HBB H 0 1 N N N -1.756 -30.671 -4.072 ? ? ? HBB RUR 59 RUR HBBA HBBA H 0 0 N N N -2.695 -29.753 -5.297 ? ? ? HBBA RUR 60 RUR HMC HMC H 0 1 N N N 2.020 -26.991 -0.143 ? ? ? HMC RUR 61 RUR HMCA HMCA H 0 0 N N N 1.138 -26.305 1.264 ? ? ? HMCA RUR 62 RUR HMCB HMCB H 0 0 N N N 0.256 -27.277 0.037 ? ? ? HMCB RUR 63 RUR HAC HAC H 0 1 N N N 1.768 -22.516 1.020 ? ? ? HAC RUR 64 RUR HBC HBC H 0 1 N N N 3.627 -23.372 1.926 ? ? ? HBC RUR 65 RUR HBCA HBCA H 0 0 N N N 3.482 -24.827 0.883 ? ? ? HBCA RUR 66 RUR HMD HMD H 0 1 N N N 1.883 -17.635 -1.909 ? ? ? HMD RUR 67 RUR HMDA HMDA H 0 0 N N N 1.220 -18.645 -0.580 ? ? ? HMDA RUR 68 RUR HMDB HMDB H 0 0 N N N 2.732 -19.139 -1.415 ? ? ? HMDB RUR 69 RUR HAD HAD H 0 1 N N N 1.570 -17.240 -4.354 ? ? ? HAD RUR 70 RUR HADA HADA H 0 0 N N N 0.300 -17.646 -5.582 ? ? ? HADA RUR 71 RUR HBD HBD H 0 1 N N N -1.413 -16.738 -4.190 ? ? ? HBD RUR 72 RUR HBDA HBDA H 0 0 N N N -0.267 -16.511 -2.831 ? ? ? HBDA RUR 73 RUR H31 H31 H 0 1 N N N -5.146 -18.858 -10.063 ? ? ? H31 RUR 74 RUR H32 H32 H 0 1 N N N -0.458 -13.585 -5.062 ? ? ? H32 RUR 75 RUR H33 H33 H 0 1 N N N -2.822 -28.887 -3.234 ? ? ? ? ? 76 RUR H34 H34 H 0 1 N N N -0.904 -29.623 -5.256 ? ? ? ? ? 77 RUR H35 H35 H 0 1 N N N 1.540 -24.168 1.778 ? ? ? ? ? 78 RUR H36 H36 H 0 1 N N N 3.705 -23.207 0.139 ? ? ? ? ? 79 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RUR CHA C1A DOUB N N 1 RUR CHA C4D SING N N 2 RUR CHA HHA SING N N 3 RUR CHB C4A DOUB N N 4 RUR CHB C1B SING N N 5 RUR CHB HHB SING N N 6 RUR CHC C4B DOUB N N 7 RUR CHC C1C SING N N 8 RUR CHC HHC SING N N 9 RUR CHD C4C SING N N 10 RUR CHD C1D DOUB N N 11 RUR CHD HHD SING N N 12 RUR C1A C2A SING Y N 13 RUR C1A NA SING Y N 14 RUR C2A C3A DOUB Y N 15 RUR C2A CAA SING N N 16 RUR C3A C4A SING Y N 17 RUR C3A CMA SING N N 18 RUR C4A NA SING Y N 19 RUR CMA HMA SING N N 20 RUR CMA HMAA SING N N 21 RUR CMA HMAB SING N N 22 RUR CAA CBA SING N N 23 RUR CAA HAA SING N N 24 RUR CAA HAAA SING N N 25 RUR CBA CGA SING N N 26 RUR CBA HBA SING N N 27 RUR CBA HBAA SING N N 28 RUR CGA O1A DOUB N N 29 RUR CGA O2A SING N N 30 RUR O2A H31 SING N N 31 RUR C1B C2B SING N N 32 RUR C1B NB DOUB N N 33 RUR C2B C3B DOUB N N 34 RUR C2B CMB SING N N 35 RUR C3B C4B SING N N 36 RUR C3B CAB SING N N 37 RUR C4B NB SING N N 38 RUR CMB HMB SING N N 39 RUR CMB HMBA SING N N 40 RUR CMB HMBB SING N N 41 RUR CAB CBB SING N N 42 RUR CAB HAB SING N N 43 RUR CBB HBB SING N N 44 RUR CBB HBBA SING N N 45 RUR C1C C2C DOUB N N 46 RUR C1C NC SING N N 47 RUR C2C C3C SING Y N 48 RUR C2C CMC SING Y N 49 RUR C3C C4C DOUB Y N 50 RUR C3C CAC SING N N 51 RUR C4C NC SING Y N 52 RUR CMC HMC SING N N 53 RUR CMC HMCA SING Y N 54 RUR CMC HMCB SING N N 55 RUR CAC CBC SING N N 56 RUR CAC HAC SING N N 57 RUR CBC HBC SING N N 58 RUR CBC HBCA SING N N 59 RUR C1D C2D SING N N 60 RUR C1D ND SING N N 61 RUR C2D C3D DOUB N N 62 RUR C2D CMD SING N N 63 RUR C3D C4D SING N N 64 RUR C3D CAD SING N N 65 RUR C4D ND DOUB N N 66 RUR CMD HMD SING N N 67 RUR CMD HMDA SING N N 68 RUR CMD HMDB SING N N 69 RUR CAD CBD SING N N 70 RUR CAD HAD SING N N 71 RUR CAD HADA SING N N 72 RUR CBD CGD SING N N 73 RUR CBD HBD SING N N 74 RUR CBD HBDA SING N N 75 RUR CGD O1D DOUB N N 76 RUR CGD O2D SING N N 77 RUR O2D H32 SING N N 78 RUR RU ND SING N N 79 RUR RU NC SING N N 80 RUR NA RU SING N N 81 RUR NB RU SING N N 82 RUR CAB H33 SING N N 83 RUR CBB H34 SING N N 84 RUR CAC H35 SING N N 85 RUR CBC H36 SING N N 86 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RUR SMILES ACDLabs 12.01 "O=C(O)CCC1=C(C2=Cc7c(c(c6C=C8N3=C(C=C4C(=C(C5=CC1=N2[Ru]3(N45)n67)CCC(=O)O)C)C(=C8CC)C)C)CC)C" RUR InChI InChI 1.02 "InChI=1S/C34H38N4O4.Ru/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h13-16H,7-12H2,1-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;" RUR InChIKey InChI 1.02 UBGGULWHFXPIQZ-RGGAHWMASA-L RUR SMILES_CANONICAL CACTVS 3.370 "CCC1=C(C)C2=N3|[Ru]45|N6=C(C=c7n4c(=C2)c(C)c7CCC(O)=O)C(=C(C)C6=Cc8n5c(C=C13)c(C)c8CC)CCC(O)=O" RUR SMILES CACTVS 3.370 "CCC1=C(C)C2=N3|[Ru]45|N6=C(C=c7n4c(=C2)c(C)c7CCC(O)=O)C(=C(C)C6=Cc8n5c(C=C13)c(C)c8CC)CCC(O)=O" RUR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CCc1c(c2n3c1C=C4C(=C(C5=[N]4[Ru@@]36[N]7=C(C=C8N6C(=C5)C(=C8C)CCC(=O)O)C(=C(C7=C2)CC)C)CCC(=O)O)C)C" RUR SMILES "OpenEye OEToolkits" 1.7.0 "CCc1c(c2n3c1C=C4C(=C(C5=[N]4[Ru]36[N]7=C(C=C8N6C(=C5)C(=C8C)CCC(=O)O)C(=C(C7=C2)CC)C)CCC(=O)O)C)C" # _pdbx_chem_comp_identifier.comp_id RUR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "[3,3'-(7,12-diethyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)dipropanoato(2-)]ruthenium" # _pdbx_chem_comp_audit.comp_id RUR _pdbx_chem_comp_audit.date 2021-03-01 _pdbx_chem_comp_audit.processing_site PDBE _pdbx_chem_comp_audit.action_type "Modify synonyms" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RUR _pdbx_chem_comp_synonyms.name "MESOPORPHYRIN IX CONTAINING RU" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##