data_RUU # _chem_comp.id RUU _chem_comp.name alpha-L-ribulofuranose _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "alpha-L-ribulose; L-ribulose; ribulose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-12-05 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 150.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RUU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4NS7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 RUU alpha-L-ribulose PDB ? 2 RUU L-ribulose PDB ? 3 RUU ribulose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RUU C1 C1 C 0 1 N N N 17.619 6.841 17.726 -1.866 -0.228 0.904 C1 RUU 1 RUU O1 O1 O 0 1 N N N 16.355 6.187 17.750 -3.050 0.285 0.289 O1 RUU 2 RUU C2 C2 C 0 1 N N R 18.597 6.083 16.856 -0.691 -0.099 -0.067 C2 RUU 3 RUU O2 O2 O 0 1 N Y N 18.728 4.746 17.320 -0.969 -0.826 -1.266 O2 RUU 4 RUU C3 C3 C 0 1 N N S 19.976 6.713 16.730 0.593 -0.642 0.589 C3 RUU 5 RUU O3 O3 O 0 1 N N N 20.853 6.162 17.699 1.120 -1.732 -0.170 O3 RUU 6 RUU C4 C4 C 0 1 N N S 20.403 6.265 15.328 1.570 0.558 0.562 C4 RUU 7 RUU O4 O4 O 0 1 N N N 20.926 4.944 15.401 2.890 0.134 0.218 O4 RUU 8 RUU C5 C5 C 0 1 N N N 19.090 6.227 14.552 0.965 1.445 -0.555 C5 RUU 9 RUU O5 O5 O 0 1 N N N 18.052 6.039 15.530 -0.463 1.286 -0.377 O5 RUU 10 RUU H11 H1 H 0 1 N N N 18.016 6.898 18.750 -1.653 0.339 1.810 H11 RUU 11 RUU H12 H2 H 0 1 N N N 17.492 7.858 17.325 -2.014 -1.277 1.158 H12 RUU 12 RUU HO1 H3 H 0 1 N Y N 15.755 6.677 18.300 -3.837 0.235 0.849 HO1 RUU 13 RUU HO2 H4 H 0 1 N Y N 19.088 4.749 18.199 -1.764 -0.529 -1.730 HO2 RUU 14 RUU H3 H5 H 0 1 N N N 19.916 7.810 16.789 0.395 -0.953 1.615 H3 RUU 15 RUU HO3 H6 H 0 1 N Y N 20.584 6.443 18.566 1.929 -2.113 0.198 HO3 RUU 16 RUU H4 H7 H 0 1 N N N 21.109 6.980 14.881 1.569 1.082 1.518 H4 RUU 17 RUU HO4 H8 H 0 1 N Y N 21.745 4.953 15.882 3.539 0.851 0.188 HO4 RUU 18 RUU H51 H9 H 0 1 N N N 18.938 7.173 14.012 1.254 2.487 -0.418 H51 RUU 19 RUU H52 H10 H 0 1 N N N 19.094 5.393 13.835 1.271 1.087 -1.538 H52 RUU 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RUU C5 C4 SING N N 1 RUU C5 O5 SING N N 2 RUU C4 O4 SING N N 3 RUU C4 C3 SING N N 4 RUU O5 C2 SING N N 5 RUU C3 C2 SING N N 6 RUU C3 O3 SING N N 7 RUU C2 O2 SING N N 8 RUU C2 C1 SING N N 9 RUU C1 O1 SING N N 10 RUU C1 H11 SING N N 11 RUU C1 H12 SING N N 12 RUU O1 HO1 SING N N 13 RUU O2 HO2 SING N N 14 RUU C3 H3 SING N N 15 RUU O3 HO3 SING N N 16 RUU C4 H4 SING N N 17 RUU O4 HO4 SING N N 18 RUU C5 H51 SING N N 19 RUU C5 H52 SING N N 20 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RUU SMILES ACDLabs 12.01 "OCC1(O)OCC(O)C1O" RUU InChI InChI 1.03 "InChI=1S/C5H10O5/c6-2-5(9)4(8)3(7)1-10-5/h3-4,6-9H,1-2H2/t3-,4-,5+/m0/s1" RUU InChIKey InChI 1.03 LQXVFWRQNMEDEE-VAYJURFESA-N RUU SMILES_CANONICAL CACTVS 3.385 "OC[C@@]1(O)OC[C@H](O)[C@@H]1O" RUU SMILES CACTVS 3.385 "OC[C]1(O)OC[CH](O)[CH]1O" RUU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@@H]([C@@H]([C@](O1)(CO)O)O)O" RUU SMILES "OpenEye OEToolkits" 1.7.6 "C1C(C(C(O1)(CO)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RUU "SYSTEMATIC NAME" ACDLabs 12.01 alpha-L-ribulofuranose RUU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S,4S)-2-(hydroxymethyl)oxolane-2,3,4-triol" RUU "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 LRulfa RUU "COMMON NAME" GMML 1.0 a-L-ribulofuranose RUU "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-L-Rulf # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support RUU "CARBOHYDRATE ISOMER" L PDB ? RUU "CARBOHYDRATE RING" furanose PDB ? RUU "CARBOHYDRATE ANOMER" alpha PDB ? RUU "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RUU "Create component" 2013-12-05 PDBJ RUU "Initial release" 2014-05-28 RCSB RUU "Other modification" 2019-08-12 RCSB RUU "Other modification" 2019-12-19 RCSB RUU "Other modification" 2020-07-03 RCSB RUU "Modify synonyms" 2020-07-17 RCSB RUU "Modify atom id" 2020-07-17 RCSB RUU "Modify component atom id" 2020-07-17 RCSB ##