data_RUZ # _chem_comp.id RUZ _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-[7-azanyl-5-(hydroxymethyl)benzimidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-3-oxidanyl-propanoyl]sulfamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H23 N5 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms SerS7HMDDA _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-21 _chem_comp.pdbx_modified_date 2020-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 461.447 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RUZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AP1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RUZ C1 C1 C 0 1 Y N N -11.324 -33.228 1.573 5.800 -0.064 0.544 C1 RUZ 1 RUZ C2 C2 C 0 1 Y N N -11.958 -32.919 2.772 6.032 -1.348 0.072 C2 RUZ 2 RUZ C3 C3 C 0 1 Y N N -11.557 -31.801 3.493 5.019 -2.086 -0.468 C3 RUZ 3 RUZ C4 C4 C 0 1 Y N N -10.517 -30.996 3.030 3.729 -1.550 -0.551 C4 RUZ 4 RUZ C5 C5 C 0 1 Y N N -9.853 -31.305 1.828 3.488 -0.253 -0.075 C5 RUZ 5 RUZ C6 C6 C 0 1 Y N N -10.279 -32.446 1.063 4.532 0.487 0.479 C6 RUZ 6 RUZ C8 C7 C 0 1 Y N N -9.046 -29.481 2.749 1.621 -1.123 -0.870 C8 RUZ 7 RUZ N N1 N 0 1 N N N -10.065 -29.839 -7.752 -3.221 -3.624 -0.003 N RUZ 8 RUZ CA C8 C 0 1 N N S -8.981 -30.688 -7.231 -4.134 -2.602 -0.533 CA RUZ 9 RUZ CB C9 C 0 1 N N N -7.717 -29.843 -7.068 -5.573 -3.118 -0.465 CB RUZ 10 RUZ OG O1 O 0 1 N N N -7.824 -28.910 -5.990 -5.717 -4.242 -1.335 OG RUZ 11 RUZ C C10 C 0 1 N N N -9.369 -31.310 -5.905 -4.012 -1.345 0.289 C RUZ 12 RUZ O O2 O 0 1 N N N -10.445 -31.047 -5.374 -3.543 -1.394 1.406 O RUZ 13 RUZ N3S N2 N 0 1 N N N -8.473 -32.170 -5.342 -4.423 -0.166 -0.219 N3S RUZ 14 RUZ S S1 S 0 1 N N N -8.648 -32.888 -3.935 -4.289 1.216 0.684 S RUZ 15 RUZ O1S O3 O 0 1 N N N -7.458 -33.612 -3.668 -4.769 2.276 -0.131 O1S RUZ 16 RUZ O2S O4 O 0 1 N N N -9.917 -33.523 -3.880 -4.829 0.913 1.964 O2S RUZ 17 RUZ "O5'" O5 O 0 1 N N N -8.804 -31.705 -2.869 -2.804 1.474 0.895 "O5'" RUZ 18 RUZ "C5'" C11 C 0 1 N N N -7.878 -30.580 -2.933 -2.133 1.983 -0.260 "C5'" RUZ 19 RUZ "C4'" C12 C 0 1 N N R -7.354 -30.342 -1.540 -0.654 2.203 0.066 "C4'" RUZ 20 RUZ "O4'" O6 O 0 1 N N N -8.438 -30.101 -0.624 0.017 0.936 0.240 "O4'" RUZ 21 RUZ "C1'" C13 C 0 1 N N R -7.854 -30.183 0.657 1.420 1.218 0.043 "C1'" RUZ 22 RUZ "C2'" C14 C 0 1 N N R -6.809 -31.307 0.599 1.461 2.207 -1.143 "C2'" RUZ 23 RUZ "O2'" O7 O 0 1 N N N -5.615 -30.841 1.211 2.483 3.186 -0.943 "O2'" RUZ 24 RUZ "C3'" C15 C 0 1 N N S -6.601 -31.514 -0.914 0.065 2.870 -1.128 "C3'" RUZ 25 RUZ "O3'" O8 O 0 1 N N N -5.229 -31.498 -1.284 0.182 4.279 -0.919 "O3'" RUZ 26 RUZ N7 N3 N 0 1 Y N N -8.892 -30.321 1.677 2.145 -0.010 -0.291 N7 RUZ 27 RUZ N9 N4 N 0 1 Y N N -9.988 -29.837 3.583 2.547 -2.024 -1.023 N9 RUZ 28 RUZ N6 N5 N 0 1 N N N -9.761 -32.785 -0.177 4.301 1.781 0.956 N6 RUZ 29 RUZ C2M C16 C 0 1 N N N -13.091 -33.768 3.274 7.418 -1.934 0.156 C2M RUZ 30 RUZ O2M O9 O 0 1 N N N -14.263 -32.988 3.389 7.571 -2.618 1.401 O2M RUZ 31 RUZ H1 H1 H 0 1 N N N -11.647 -34.097 1.018 6.613 0.507 0.969 H1 RUZ 32 RUZ H2 H2 H 0 1 N N N -12.055 -31.554 4.419 5.213 -3.085 -0.832 H2 RUZ 33 RUZ H3 H3 H 0 1 N N N -8.440 -28.599 2.893 0.588 -1.242 -1.161 H3 RUZ 34 RUZ H4 H4 H 0 1 N N N -10.895 -30.386 -7.861 -3.441 -3.842 0.957 H4 RUZ 35 RUZ H5 H5 H 0 1 N N N -10.240 -29.092 -7.111 -3.237 -4.455 -0.576 H5 RUZ 36 RUZ H7 H7 H 0 1 N N N -8.773 -31.493 -7.951 -3.874 -2.386 -1.569 H7 RUZ 37 RUZ H8 H8 H 0 1 N N N -6.866 -30.513 -6.873 -5.803 -3.418 0.558 H8 RUZ 38 RUZ H9 H9 H 0 1 N N N -7.540 -29.287 -8.001 -6.257 -2.329 -0.774 H9 RUZ 39 RUZ H10 H10 H 0 1 N N N -7.020 -28.408 -5.924 -6.606 -4.622 -1.342 H10 RUZ 40 RUZ H11 H11 H 0 1 N N N -7.638 -32.365 -5.856 -4.798 -0.127 -1.112 H11 RUZ 41 RUZ H12 H12 H 0 1 N N N -7.045 -30.817 -3.612 -2.222 1.267 -1.077 H12 RUZ 42 RUZ H13 H13 H 0 1 N N N -8.402 -29.683 -3.295 -2.585 2.929 -0.555 H13 RUZ 43 RUZ H14 H14 H 0 1 N N N -6.685 -29.469 -1.559 -0.551 2.816 0.961 H14 RUZ 44 RUZ H15 H15 H 0 1 N N N -7.309 -29.248 0.854 1.843 1.677 0.937 H15 RUZ 45 RUZ H16 H16 H 0 1 N N N -7.195 -32.224 1.068 1.623 1.673 -2.079 H16 RUZ 46 RUZ H17 H17 H 0 1 N N N -5.762 -30.719 2.142 2.553 3.833 -1.658 H17 RUZ 47 RUZ H18 H18 H 0 1 N N N -7.078 -32.458 -1.218 -0.465 2.664 -2.057 H18 RUZ 48 RUZ H19 H19 H 0 1 N N N -4.784 -32.235 -0.883 0.627 4.748 -1.638 H19 RUZ 49 RUZ H20 H20 H 0 1 N N N -9.027 -32.149 -0.417 5.004 2.257 1.426 H20 RUZ 50 RUZ H21 H21 H 0 1 N N N -9.398 -33.716 -0.143 3.439 2.203 0.817 H21 RUZ 51 RUZ H22 H22 H 0 1 N N N -13.270 -34.592 2.568 7.567 -2.635 -0.665 H22 RUZ 52 RUZ H23 H23 H 0 1 N N N -12.829 -34.180 4.260 8.156 -1.134 0.089 H23 RUZ 53 RUZ H24 H24 H 0 1 N N N -14.975 -33.531 3.707 8.441 -3.022 1.524 H24 RUZ 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RUZ N CA SING N N 1 RUZ CA CB SING N N 2 RUZ CA C SING N N 3 RUZ CB OG SING N N 4 RUZ C O DOUB N N 5 RUZ C N3S SING N N 6 RUZ N3S S SING N N 7 RUZ S O2S DOUB N N 8 RUZ S O1S DOUB N N 9 RUZ S "O5'" SING N N 10 RUZ "C5'" "O5'" SING N N 11 RUZ "C5'" "C4'" SING N N 12 RUZ "C4'" "C3'" SING N N 13 RUZ "C4'" "O4'" SING N N 14 RUZ "O3'" "C3'" SING N N 15 RUZ "C3'" "C2'" SING N N 16 RUZ "O4'" "C1'" SING N N 17 RUZ N6 C6 SING N N 18 RUZ "C2'" "C1'" SING N N 19 RUZ "C2'" "O2'" SING N N 20 RUZ "C1'" N7 SING N N 21 RUZ C6 C1 DOUB Y N 22 RUZ C6 C5 SING Y N 23 RUZ C1 C2 SING Y N 24 RUZ N7 C5 SING Y N 25 RUZ N7 C8 SING Y N 26 RUZ C5 C4 DOUB Y N 27 RUZ C8 N9 DOUB Y N 28 RUZ C2 C2M SING N N 29 RUZ C2 C3 DOUB Y N 30 RUZ C4 C3 SING Y N 31 RUZ C4 N9 SING Y N 32 RUZ C2M O2M SING N N 33 RUZ C1 H1 SING N N 34 RUZ C3 H2 SING N N 35 RUZ C8 H3 SING N N 36 RUZ N H4 SING N N 37 RUZ N H5 SING N N 38 RUZ CA H7 SING N N 39 RUZ CB H8 SING N N 40 RUZ CB H9 SING N N 41 RUZ OG H10 SING N N 42 RUZ N3S H11 SING N N 43 RUZ "C5'" H12 SING N N 44 RUZ "C5'" H13 SING N N 45 RUZ "C4'" H14 SING N N 46 RUZ "C1'" H15 SING N N 47 RUZ "C2'" H16 SING N N 48 RUZ "O2'" H17 SING N N 49 RUZ "C3'" H18 SING N N 50 RUZ "O3'" H19 SING N N 51 RUZ N6 H20 SING N N 52 RUZ N6 H21 SING N N 53 RUZ C2M H22 SING N N 54 RUZ C2M H23 SING N N 55 RUZ O2M H24 SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RUZ InChI InChI 1.03 "InChI=1S/C16H23N5O9S/c17-8-1-7(3-22)2-10-12(8)21(6-19-10)16-14(25)13(24)11(30-16)5-29-31(27,28)20-15(26)9(18)4-23/h1-2,6,9,11,13-14,16,22-25H,3-5,17-18H2,(H,20,26)/t9-,11+,13+,14+,16+/m0/s1" RUZ InChIKey InChI 1.03 YZMBOMBSTSCXHY-LMOQKQACSA-N RUZ SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CO)C(=O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3cc(CO)cc(N)c23" RUZ SMILES CACTVS 3.385 "N[CH](CO)C(=O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3cc(CO)cc(N)c23" RUZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc2c(c1N)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COS(=O)(=O)NC(=O)[C@H](CO)N)O)O)CO" RUZ SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc2c(c1N)n(cn2)C3C(C(C(O3)COS(=O)(=O)NC(=O)C(CO)N)O)O)CO" # _pdbx_chem_comp_identifier.comp_id RUZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-[7-azanyl-5-(hydroxymethyl)benzimidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-3-oxidanyl-propanoyl]sulfamate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RUZ _pdbx_chem_comp_synonyms.name SerS7HMDDA _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RUZ "Create component" 2020-10-21 PDBE RUZ "Initial release" 2020-11-11 RCSB ##